cluster # 6789

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Anopheles gambiae
cluster # 6789 cluster # 6789 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6789#0 length = 1082 sequences # 5

consensus_6789#1 length = 712 sequences # 1

consensusID : consensus_6789#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1082
fasta sequence

                              [CCGCCCACGCGTCCGCGACGATGATGATGAGGAGGAGGACGATGAAAATCAGATGATCATCGGCGAGGAGCACGTGAAGAAGGTGCAGGTGCAGTACTGCGACCTGTGCAATATGTACCTGCCCCGGCGCACGGAAAATCAGGACCGCGTGCTGCGCGAACACTGCAAGAAGCGATCTCACCTGAAGCTGTACATCCGCTTCCGGAACGACAAGAAGCTGCGCGAACAGGCGGAACGCTTCCACAAGAAGAAGCTGAAGGGTGACAAGGAGGCTGCGGGAAAGAAGGGCGATGACAAGAAGGCAAACGATTCGATCACTTCCACCGACTCAAAGACGGTCACGGACGGTAATAGCACCGCGAACACGAACGACACAACCACCACGTCCAAATCGGAAGGTGAAACCCGATCGGACAAGAAAAGTGACACGGCCTCGACGGGTAGCGCAACCGAAAGCGCAAACAACGCAACGTCAGCTAAGGTGAACACTTCCAGCGCGAACAAAACCGACGTTGATTCGTCCGACGCGAACCGCTCGCTCGACGGAAGCAACAGCACCACCACCACCCTAGCGGCGACGATCGGTGGTGCCGATGGGCCCGGCGAGCCCTCGGACGAGCTGGTCGACAAGCTGATGTGGCAGGTGGTGGACAACGAAGATCTGGGCGATCTGCTGCGCGACGTGCAGGACGACGCCGAGGAGGA-GACGACGATAAGACGAACCTGGAGCGCTACGACAAGTTCCGGCACACGGAGAAGAACGGCGGCGAGCAGCGATCGGATGCTGCCGGTGCGGACGAGGAGGATACCGTTGCCAGCAAAGGGCAGGCTAAAAAGGGAACGGCCGCGAACGGTGGTGGTGCCGAGGTGGCCGCTAATGGGGAAGCCTCCAAGGAGGCCAAACCCGCCGCGTAGGAATGTGTAGGGTATGTGTGTGTTTGTGTATCGAATTCATTACGATAAGGAAGCGTAGTTGTGTTTTTGAACTTAATATACTTATCGTAAGTAATAAGTGCACACGGTGCATACATTTAAGATAGTGTGCGCGCGCGTGTGTATTCAGTGTAGGCTATAGATCATTT]

[+] EMBL BM604369             [CCGCCCACGCGTCCGCGACGATGATGATGAGGAGGAGGACGATGAAAATCAGATGATCATCGGCGAGGAGCACGTGAAGAAGGTGCAGGTGCAGTACTGCGACCTGTGCAATATGTACCTGCCCCGGCGCACGGAAAATCAGGACCGCGTGCTGCGCGAACACTGCAAGAAGCGATCTCACCTGAAGCTGTACATCCGCTTCCGGAACGACAAGAAGCTGCGCGAACAGGCGGAACGCTTCCACAAGAAGAAGCTGAAGGGTGACAAGGAGGCTGCGGGAAAGAAGGGCGATGACAAGAAGGCAAACGATTCGATCACTTCCACCGACTCAAAGACGGTCACGGACGGTAATAGCACCGCGAACACGAACGACACAACCACCACGTCCAAATCGGAAGGTGAAACCCGATCGGAAAAGAAAAGTGACACGGCCTCGACGGGTAGCGCAACCGAAAGCGCAAACAACGCAACGTCAGCTAAGGTGAACACTTCCAGCGCGAACAAAACCGACGTTGATTCGTCCGACGCGAACCGCTCGCTCGACGGAAGCAACAGCACCACCACCACCCTAGCGGCGACGATCGGTGGTGCCGATGGGCCCGGCGAGCCCTCGGACGAGCTGGTCGACAAGCTGATGTGGCAGGTGGTGGACAACGAAGATCTGGGCGATCTGCTGCGCGACGTGCAGGA                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BM604384             [CCGCCCACGCGTCCGCGACGATGATGATGAGGAGGAGGACGATGAAAATCAGATGATCATCGGCGAGGAGCACGTGAAGAAGGTGCAGGTGCAGTACTGCAACCTGTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX605686             [                                                                                                                                                                                                                                                                                                                                                                                     ACAACCTCCACGCCCAAATCGGAAGGTGAAACCCGATCGGACAAGAAAAGTGACACGGCCACGACAGGTAGCGCAACCGACAGCGCAAACAACGCAACGTCAGCTAAGGTGAACACTTCCAGCGCGAGCAAAACCGACGTTGATTCGTCCGACGCGAACCGCTCGATGGACGGAAGCAACAG   CACCACCACCCTAGCGGCGACGATCGGTGGCGCCGATGGGCCCGGCGAGCCCTCGGACGAGCTGGTCGACAAGCTGATGTGGCAGGTGGTGGACAACGAAGATCTGGGCGATCTGTTGCGCGACGTTCAGGACGACGCCGAGGAGGAGGACGACGATAAGACGAACCTGGAGCGCTACGACAAGTTCCGGCACACGGAGAAGAACGGCGGCGAGCAGCGATCGGATGCTGCCGGTGCGGACGAGGAGGATACCGTTGC                                                                                                                                                                                                                                                                           ]
[+] EMBL BM618822             [                                                                                                                                                                                                                                                                                                                                                                                                           ccGGTGAAACCCGATCGGACAAGAAAAGTGACACGGCCTCGACGGGTAGCGCAGCCGAAAGCGCAAACAACGCAACGTCAGCTAAGGTGAACACTTCCAGCGCGAACAAAACCGACGTTGATTCGTCCGACGCGAACCGCTCGCTCGACGGAAGCAACAGCACCACCACCACCCTGGCGACGACGATCGGTGGTGCCGATGGGCCCGGCGAGCCCTCGGACGAGCTGGTCGACAAGCTGATGTGGCAGGTGGTGGACAACGAAGATCTGGGCGATCTGCTGCGCGACGTGCAGGACGACGCCGAGGAGGA GACGACGATAAGACGAACCTGGAGCGCTACGACAAGTTCCGGCACACGGAGAAGAACGGCGGTGAGCAGCGATCGGATGCCGCCGGTGCGGACGAGGAGGATACCGTTGCCAGCAAAGGGCAGGCTAAAAAGGGAACGGCCGCGAACGGTGGTGGTGCCGAGGTGGCCGCTAATGGGGAAGCCTCCAAGGAGGCCAAACCCGCCGCGTAGGAATGTGTAGGGTATGTGTGTGTTTGTGTATCGAATTCATTACGATAAGGAAGCGTAGTTGTGTTTTTGAACTTAATATACTTATCGTAAGTAATAAGTGCACACGGTGCATACATTTAAGATAGTGTGCGCGCGCGTGTGTATTCAGTGTAGGCTATAGATCATTT]
[+] EMBL BM629624             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       gcccgtccgGCGAGCAAAACCGACGTTGATTCGTCCGACGCGAACCGCTCGCTGGACGGAAGCAACAG   CACCACCACCCTAGCGGCGACGATCGGTGGCGCCGATGGGCCCGGCGAGCCCTCGGACGAGCTGGTCGACAAGCTGATGTGGCAGGTGGTGGACAACGAAGATCTGGGCGATCTGTTGCGCGA                                                                                                                                                                                                                                                                                                                                                                                                                  ]




>consensus_6789#0
CCGCCCACGCGTCCGCGACGATGATGATGAGGAGGAGGACGATGAAAATCAGATGATCAT
CGGCGAGGAGCACGTGAAGAAGGTGCAGGTGCAGTACTGCGACCTGTGCAATATGTACCT
GCCCCGGCGCACGGAAAATCAGGACCGCGTGCTGCGCGAACACTGCAAGAAGCGATCTCA
CCTGAAGCTGTACATCCGCTTCCGGAACGACAAGAAGCTGCGCGAACAGGCGGAACGCTT
CCACAAGAAGAAGCTGAAGGGTGACAAGGAGGCTGCGGGAAAGAAGGGCGATGACAAGAA
GGCAAACGATTCGATCACTTCCACCGACTCAAAGACGGTCACGGACGGTAATAGCACCGC
GAACACGAACGACACAACCACCACGTCCAAATCGGAAGGTGAAACCCGATCGGACAAGAA
AAGTGACACGGCCTCGACGGGTAGCGCAACCGAAAGCGCAAACAACGCAACGTCAGCTAA
GGTGAACACTTCCAGCGCGAACAAAACCGACGTTGATTCGTCCGACGCGAACCGCTCGCT
CGACGGAAGCAACAGCACCACCACCACCCTAGCGGCGACGATCGGTGGTGCCGATGGGCC
CGGCGAGCCCTCGGACGAGCTGGTCGACAAGCTGATGTGGCAGGTGGTGGACAACGAAGA
TCTGGGCGATCTGCTGCGCGACGTGCAGGACGACGCCGAGGAGGAGACGACGATAAGACG
AACCTGGAGCGCTACGACAAGTTCCGGCACACGGAGAAGAACGGCGGCGAGCAGCGATCG
GATGCTGCCGGTGCGGACGAGGAGGATACCGTTGCCAGCAAAGGGCAGGCTAAAAAGGGA
ACGGCCGCGAACGGTGGTGGTGCCGAGGTGGCCGCTAATGGGGAAGCCTCCAAGGAGGCC
AAACCCGCCGCGTAGGAATGTGTAGGGTATGTGTGTGTTTGTGTATCGAATTCATTACGA
TAAGGAAGCGTAGTTGTGTTTTTGAACTTAATATACTTATCGTAAGTAATAAGTGCACAC
GGTGCATACATTTAAGATAGTGTGCGCGCGCGTGTGTATTCAGTGTAGGCTATAGATCAT
TT

consensusID : consensus_6789#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 712
fasta sequence

                              [CCGCGGACGCGTGGGGTGCCGGGAGCGGCTGCTGGAGATGCGGGCCGCCCAGCGCAACGCGCAGAAGGACGAGGACGAAAAGTCGGAGGACGGTGCCGGTGGCGATGAGGGCAAGCGGCCCGGCTTCTGCCTGCTGTGCCGGCTGAACTATCGGCAGCCGCGCGCCGTCCACCAGCAGTCCGAGGGGCACAAGATGATGAAGAAATTCCTCATGCCGTACTGTAGCGTGTGCAAGCTCGGCTTCAAGAGCCCGATGGCGTTCGAGACGCACCGTGCCTCGCTGGACCATCTGAAGATTAAGGCACGCGTGGAGCGGTACGCTTCGTCCACGAAGGGCGACGATTCGGGCGACGAGAACCAGGCCGAGGCGGGCGATCTCGACCTGGACAGCATGACGATCGTGGATGAGGTGGGCAAGGTGGATGACATTTGCGAGCCGGGTGTGGCGGGAGAAACGCCCACCAGGAAGCAGCGCAGCTACGGCGATGGTGGCGGCAGTGGTCGCGCAGGCACGGAGGGATGAGGATGACGAGGACGACGATGATGATGAGGAGGAGGACGATGAAAATCAGATGATCATCGGCGAGGACCACGTGAAAGAAGGTGCAGGTGCAATACTGCGACCTGTGCAATATGTACCTGCCCCGGCGCACGGAAATTCAGGACCGCGTGCTGCGCGAACACTTGCAAGAAGCGATCTTCACCTGAAGCT]

[+] EMBL BM606754             [CCGCGGACGCGTGGGGTGCCGGGAGCGGCTGCTGGAGATGCGGGCCGCCCAGCGCAACGCGCAGAAGGACGAGGACGAAAAGTCGGAGGACGGTGCCGGTGGCGATGAGGGCAAGCGGCCCGGCTTCTGCCTGCTGTGCCGGCTGAACTATCGGCAGCCGCGCGCCGTCCACCAGCAGTCCGAGGGGCACAAGATGATGAAGAAATTCCTCATGCCGTACTGTAGCGTGTGCAAGCTCGGCTTCAAGAGCCCGATGGCGTTCGAGACGCACCGTGCCTCGCTGGACCATCTGAAGATTAAGGCACGCGTGGAGCGGTACGCTTCGTCCACGAAGGGCGACGATTCGGGCGACGAGAACCAGGCCGAGGCGGGCGATCTCGACCTGGACAGCATGACGATCGTGGATGAGGTGGGCAAGGTGGATGACATTTGCGAGCCGGGTGTGGCGGGAGAAACGCCCACCAGGAAGCAGCGCAGCTACGGCGATGGTGGCGGCAGTGGTCGCGCAGGCACGGAGGGATGAGGATGACGAGGACGACGATGATGATGAGGAGGAGGACGATGAAAATCAGATGATCATCGGCGAGGACCACGTGAAAGAAGGTGCAGGTGCAATACTGCGACCTGTGCAATATGTACCTGCCCCGGCGCACGGAAATTCAGGACCGCGTGCTGCGCGAACACTTGCAAGAAGCGATCTTCACCTGAAGCT]




>consensus_6789#1
CCGCGGACGCGTGGGGTGCCGGGAGCGGCTGCTGGAGATGCGGGCCGCCCAGCGCAACGC
GCAGAAGGACGAGGACGAAAAGTCGGAGGACGGTGCCGGTGGCGATGAGGGCAAGCGGCC
CGGCTTCTGCCTGCTGTGCCGGCTGAACTATCGGCAGCCGCGCGCCGTCCACCAGCAGTC
CGAGGGGCACAAGATGATGAAGAAATTCCTCATGCCGTACTGTAGCGTGTGCAAGCTCGG
CTTCAAGAGCCCGATGGCGTTCGAGACGCACCGTGCCTCGCTGGACCATCTGAAGATTAA
GGCACGCGTGGAGCGGTACGCTTCGTCCACGAAGGGCGACGATTCGGGCGACGAGAACCA
GGCCGAGGCGGGCGATCTCGACCTGGACAGCATGACGATCGTGGATGAGGTGGGCAAGGT
GGATGACATTTGCGAGCCGGGTGTGGCGGGAGAAACGCCCACCAGGAAGCAGCGCAGCTA
CGGCGATGGTGGCGGCAGTGGTCGCGCAGGCACGGAGGGATGAGGATGACGAGGACGACG
ATGATGATGAGGAGGAGGACGATGAAAATCAGATGATCATCGGCGAGGACCACGTGAAAG
AAGGTGCAGGTGCAATACTGCGACCTGTGCAATATGTACCTGCCCCGGCGCACGGAAATT
CAGGACCGCGTGCTGCGCGAACACTTGCAAGAAGCGATCTTCACCTGAAGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6789#0      CCGCCCACGCGTCCGCGACGATGATGATGAGGAGGAGGACGATGAAAATCAGATGATCAT 60
consensus_6789#1      ------------------------------------------------------------
                                                                                  

consensus_6789#0      CGGCGAGGAGCACGTGAAGAAGGTGCAGGTGCAGTACTGCGACCTGTGCAATATGTACCT 120
consensus_6789#1      ------------------------------------------------------------
                                                                                  

consensus_6789#0      GCCCCGGCGCACGGAAAATCAGGACCGCGTGCTGCGCGAACACTGCAAGAAGCGATCTCA 180
consensus_6789#1      ------------------------------------------------------------
                                                                                  

consensus_6789#0      CCTGAAGCTGTACATCCGCTTCCGGAACGACAAGAAGCTGCGCGAACAGGCGGAACGCTT 240
consensus_6789#1      ---------CCGCGGACGCGTGGGGTGCCGGGAGCGGCTGC-TGGAGATGCGGGCCGC-- 48
                                  *   *** *  **  *    **  *****  * * * ****  ***  

consensus_6789#0      CCACAAGAAGAAGCTGAAGGGTGACAAGGAGGCTGCGGGAAAGAAGGGCGATGACAA-GA 299
consensus_6789#1      CCAGCGCAACGCGCAGAAGGACGAGGACGAAAAGTCGGAGGACGGTGCCGGTGGCGATGA 108
                      ***    **   ** *****  **  * **     ***   *    * ** ** * * **

consensus_6789#0      AGGCAAACGATTCGATCACTTCCACCGACTCAAAGACGGTCACGGACGGTAATAGCACCG 359
consensus_6789#1      GGGCAAGCGGCCCGG---CTTCTGCCTGCTGTGCCGGCTGAACTATCGGCAGCCGCGCGC 165
                       ***** **   **    ****  **  **           **   *** *   ** *  

consensus_6789#0      CGAACACGAACGACACAACCACCACGTCCAAATCGGAAGGTGAAACCCGATCGGACAAGA 419
consensus_6789#1      CGTCCACCAGCAGTCCGAGGGGCACA---AGATGATGAAGAAATTCCTCATGCCGTACTG 222
                      **  *** * *    * *    ***    * **    * *  *  **  **     *   

consensus_6789#0      AAAGTGACACGGCCTCGACGGGTAGCGCAACCGAAAGCGCAAACAACGCAACGTCAGCTA 479
consensus_6789#1      TAGCGTGTGCAAGCTCGGCTTCAAGAGC--CCGATGGCGTTCGAGACGCACCGT--GCCT 278
                       *       *   **** *    ** **  ****  ***      ***** ***  **  

consensus_6789#0      AGGTGAACACTTCCAGCGCGAACAAAACCGACGTTGATTCGTCCGACGCGAACCGCTCGC 539
consensus_6789#1      CGCTGGACCATCTGAA---GATTAAGGCACGCGTGGA----------GCGGTACGCTTCG 325
                       * ** **  *   *    **  **  *   *** **          ***   ****   

consensus_6789#0      TCGACGGAAGCAACAGCACCACCACCACCCTAGCGGCGACGATCGGTGGTGCCGATGGGC 599
consensus_6789#1      TCCACGAAGG----------GCGACGATTCGGGCGACGAGAACCAG----GCCGA----- 366
                      ** *** * *           * ** *  *  *** ***  * * *    *****     

consensus_6789#0      CCGGCGAGCCCTCGGACGAGCTGGTCGACAAGCTGATGTGGCAGGTGGTGGACAACGAAG 659
consensus_6789#1      --GGCGGGCGATC--TCGACCTGGACAGCATGACGATCGTGGATGAGGTGGGCAAGGTGG 422
                        **** **  **   *** **** *  ** *  ***   * * * ***** *** *  *

consensus_6789#0      ATC---TGGGCGATCTGCTGCGCGACGTGCAGGACGACGCCGAGGAGGAGACGACGATAA 716
consensus_6789#1      ATGACATTTGCGAGCCGG-GTGTGGCGGGAGAAACGCCCACCAGGAAGCAGCGCAGCTAC 481
                      **    *  **** * *  * * * ** *    *** *  * **** *   **  * ** 

consensus_6789#0      GACGAACCTGGAGCGCTACGACAAGTTCCGGCACACGGAGAAGAACGGCGGCGAGCAGCG 776
consensus_6789#1      GGCGATGGTGGCG-GCAGTGGTC-GCGCAGGCACGGAGGGATGAG-GATGACGAGGACGA 538
                      * ***   *** * **   *    *  * *****   * ** **  *  * **** *   

consensus_6789#0      ATCGGATGCTGCCGGTGCGGACGAGGAGGAT---ACCGTTGCCAGCAAAGGGCAGGCTAA 833
consensus_6789#1      CGATGATGATGAGGAGGAGGACGATGAAAATCAGATGATCATCGGCGAGGACCACGTGAA 598
                          **** **  *  * ****** **  **   *   *   * ** * *  ** *  **

consensus_6789#0      AAAGGGAACGGCCGCGA-ACGGTGGTGGTGCCGAGGTGGCCGCTAATGGGGAAGCCTCCA 892
consensus_6789#1      AGAAGGTGCAGGTGCAATACTGCGACCTGTGCAATATGTAC-CTGCCCCGGCGCACGGAA 657
                      * * **  * *  ** * ** * *       * *  **  * **     **    *   *

consensus_6789#0      AGGAGGCCAAACCCGCCGCGTAGGAATGTGTAGGGTATGTGTGTGTTTGTGTATCGAATT 952
consensus_6789#1      ATTCAGGACCGCGTGCTGCGCGAACACTTGCAAGAAGCG-----ATCTTCACCTGAAGCT 712
                      *    *     *  ** ***     *  ** * *    *      * *     *  *  *

consensus_6789#0      CATTACGATAAGGAAGCGTAGTTGTGTTTTTGAACTTAATATACTTATCGTAAGTAATAA 1012
consensus_6789#1      ------------------------------------------------------------
                                                                                  

consensus_6789#0      GTGCACACGGTGCATACATTTAAGATAGTGTGCGCGCGCGTGTGTATTCAGTGTAGGCTA 1072
consensus_6789#1      ------------------------------------------------------------
                                                                                  

consensus_6789#0      TAGATCATTT 1082
consensus_6789#1      ----------