|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6796#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1102 fasta sequence
[AAATCTATTCCAAGCACGGCTAACACACACCAAAATCCCCTCCCCGGCTGCACGATGGCGAATCTGCGCGATATTACCGCGAAAAAATACGCCCGCCCCACGATCAACGTTGCGATCCATCCGTACCCGGGCACACCGCCGACGGGCGCGGGCCCATCCGCCGACGGTACCGACTACAGGTCCATCTTTTTCAACGAAATCTCACAAATCATGCGCGGGTACGGCGATTGCGAGAAGCCGCTCCGCGAGTCGGTCCTGCTGGTGGAGAAGATAGTGCTGCA-GCAGCTGCGCGGCATCATGCAGGAAGCGATCGATCACGCCATGTCGCGCCCGAACTCACCGACCCTGTCCCGGCGCGACTTTGAGTACATTATGCGCAAAAATCAGGTGCGCGTGGCGCGGCTGCAGAAGTACTTCCGCGACATGGCGCTGATGAAGAAGCGGCTGAAGGATCTGTGCGGTGGCCGCTATCCGCACCTGAACCTTGGCCCGAGCTCGGAAACGTCCGACGACGATTCGGACCGCGAGGCGCCCGAAAAGTATGACGAGGAAAAGGCCCGCCGGCTGTTCCGGGCGGACCGTATCTCGCAGATCCTCACCGGGCGACAGTACGAGGAGCACATAGCGGCCCGCCGCACCTCCTTCATGCACCGGAACACGGAGGTGATGAAGAGCCGGATGCGCCAGTGGTTAAACATACCGGAGGATGT-GAACATTACGCAGAGCTGCCTGCTCACGTTGGCGTACCTGGCGCACGAAACGATCGCCGTGCTGGTGGACTTTTGCATCCTGACGCGCCTCAACACGGCCAACCGGACGGTGGATCCGTATAGCCGGGTTACCCCTTCTGGTAAATCGTACAACATGCTGCACGCCTGCCCGGAAGTTTCGCAAGGCCGCGGGCTGGACGGCGTGAAGCCGATCACGCCGCAGGAAATTACCGAAGCGATGCGACGACACCGCCAGATGGCCATGCGCAGCTC-GGGTCGGTACCGAAATGCGCTCAACTTCAAGCCACCCTACCTAGCGATGTAATAACGGAAAGAGTCTCTCATG-CTTAAACGTAATGTTAAATTAGCCTTATATTTGTAATAAAAAAACA]
[+] EMBL CNS09596 [AAATCTATTCCAAGCACGGCTAACACACACCAAAATCCCCTCCCCGGCTGCACGATGGCGAATCTGCGCGATATTACCGCGAAAAAATACGCCCGCCCCACGATCAACGTTGCGATCCATCCGTACCCGGGCACACCGCCGACGGGCGCGGGCCCATCCGCCGACGGTACCGACTACAGGTCCATCTTTTTCAACGAAATCTCACAAATCATGCGCGGGTACGGCGATTGCGAGAAGCCGCTCCGCGAGTCGGTCCTGCTGGTGGAGAAGATAGTGCTGCA GCAGCTGCGCGGCATCATGCAGGAAGCGATCGATCACGCCATGTCGCGCCCGAACTCACCGACCCTGTCCCGGCGCGACTTTGAGTACATTATGCGCAAAAATCAGGTGCGCGTGGCGCGGCTGCAGAAGTACTTCCGCGACATGGCGCTGATGAAGAAGCGGCTGAAGGATCTGTGCGGTGGCCGCTATCCGCACCTGAACCTTGGCCCGAGCTCGGAAACGTCCGACGACGATTCGGACCGCGAGGCGCCCGAAAAGTATGACGAGGAAAAGGCCCGCCGGCTGTTCCGGGCGGACCGTATCTCGCAGATCCTCACCGGGCGACAGTACGAGGAGCACATAGCGGCCCGCCGCACCTCCTTCATGCACCGGAACACGGAGGTGATGAAGAGCCGGATGCGCCAGTGGTTAAACATACCGGAGGATGT GAACATTACGCAGAGCTGCCTGCTCACGTTGGCGTACCTGGCGCACGAAACGATCGCCGTGCTGGTGGACTTTTGCATCCTGACGCGCCTCAACACGGCCAACCGGACGGTGGATCCGTATAGCCGGGTTACCCCTTCTGGTAAATCGTACAACATGCTGCACGCCTGCCCGGAAGTTTCGCAAGGCCGCGGGCTGGACGGCGTGAAG CGATCA ]
[+] EMBL CNS0948X [ AACACACACCAAAATCCCCTCCCCGGCTGCACGATGGCGAATCTGCGCGATATTACCGCGAAAAAATACGCCCGCCCCACGATCAACGTTGCGATCCATCCGTACCCGGGCACACCGCCGACGGGCGCGGGCCCATCCGCCGACGGTACCGACTACAGGTCCATCTTTTTCAACGAAATCTCACAAATCATGCGCGGGTACGGCGATTGCGAGAAGCCGCTCCGCGAGTCGGTCCTGCTGGTGGAGAAGATAGTGCTGCA GCAGCTGCGCGGCATCATGCAGGAAGCGATCGATCACGCCATGTCGCGCCCGAACTCACCGACCCTGTCCCGGCGCGACTTTGAGTACATTATGCGCAAAAATCAGGTGCGCGTGGCGCGGCTGCAGAAGTACTTCCGCGACATGGCGCTGATGAAGAAGCGGCTGAAGGATCTGTGCGGTGGCCGCTATCCGCACCTGAACCTTGGCCCGAGCTCGGAAACGTCCGACGACGATTCGGACCGCGAGGCGCCCGAAAAGTATGACGAGGAAAAGGCCCGCCGGCTGTTCCGGGCGGACCGTATCTCGCAGATCCTCACCGGGCGACAGTACGAGGAGTACATAGCGGCCCGCCGCACCTCCTTCATGCACCGGAACACGGAGGTGATGAAGAGCCGGATGCGCCAGTGGTTAAACATACCGGAGGATGTGGAACATTA ]
[-] EMBL CNS09597 [ CGGTCCTGCTGGTGGAGAAGATAGTGCTGCAGGCAG TGCGCGGCATCATGCAGGAAGCGATCGATCACGCCTTGTCGCGCCCGAACTCACCGACCCTGTCCCGGCGCGACTTTGAGTACATTATGCGCAAAAATCAGGTG GCGTGGCGCGGCTGCAGAAGTACTTCCGCGACATGGCGCTGATGAAGAAGCGGCTGAAGGATCTGTGCGGTGGCCGCTATCCGCACCTGAACCTTGGCCCGAGCTCGGAAACGTCCGACGACGATTCGGACCGCGAGGCGCCCGAAAAGTATGACGAGGAAAAGGCCCGCCGGCTGTTCCGGGCGGACCGTTTCTCGCAGATCCTCACCGGGCGACAGTACGAGGAGCACATAGCGGCCCGCCGCACCTCCTTCATGCACCGGAACACGGAGGTGATGAAGAGCCGGATGCGCCAGTGGTTAAACATACCGGAGGATGT GAACATTACGCAGAGCTGCCGGCTCACGTTGGCGTACCTGGCGCACGAAACGATCGCCGTGCTGGTGGACTTTTGCATCCTGACGCGCCTCAACACGGCCAACCGGACGGTGGATCCGTATAGCCGGGTTACCCCTTCTGGTAAATCGTACAACATGCTGCACGCCTGCCCGGAAGTTTCGCAAGGCCGCGGGCTGGACGGCGTGAAGCCGATCACGCCGCAGGAAATTACCGAAGCGATGCGACGACACCGCCAGATGGCCATGCGCAGCTCGGGGTCGGTACCGAAATGCGCTCAACTTCAAGCCACCCTACCTAGCGATGTAATAACGGAAAGAGTCTCTCATGTCTTAAACGTAATGTTAAATTAGCCTTATATTTGTAATAAAAAAACA]
[-] EMBL CNS0948Y [ GCGGCTGCAGAAGTACTTCCGCGAAATGGCGCTGATGAAGAAGCGGCTGAAGGATCTGTGCGGTGGCCGCTATCCGCACCTGAACCTTGGCCCGAGCTCGGAAACGTCCGACGACGATTCGGACCGCGAGGCGCCCGAAAAGTATGACGAGGAAAAGGCCCGCCGGCTGTTCCGGGCGGACCGTATCTCGCAGATCCTCACCGGGCGACAGTACGAGGAGTACATAGCGGCCCGCCGCACCTCCTTCATGCACCGGAACACGGAGGTGATGAAGAGCCGGATGCGCCAGTGGTTAAACATACCGGAGGATGT GAACATTACGCAGAGCTGCCTGCTCACGTTGGCGTACCTGGCGCACGAAACGATCGCCGTGCTGGTGGACTTTTGCATCCTGACGCGCCTCAACACGGCCAACCGGACGGTGGATCCGTATAGCCGGGTTACCCCTTCTGGTAAATCGTACAACATGCTGCACGCCTGCCCGGAAGTTTCGCAAGGCCGCGGGCTGGACGGCGTGAAGCCGATCACGCCGCAGGAAATTACCGAAGCGATGCGACGACACCGCCAGATGGCCATGCGCAGCTC GGGTCGGTACCGAAATGCGCTCAACTTCAAGCCACCCTACCTAGCGATGTAATAACGGAAAGAGTCTCTCATG CTTAAACGTAATGTTAAATTAGCCTTATATTTGTAAAAAAAAAA ]
consensusID : consensus_6796#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGAAATCCCCTCCCCGGCTGCACGATGGCGAATCTGCGCGATATTACCGCGAAAAAATACGCCCGCCCCACGATCAACGTTGCGATCCATCCGAACCCGGGCACACCGCCGACGGGCGCGGGCCCATCCGCCGACGGCACCGACTACAGGTCCATCTTTTTCAACGAAATCTCACAAATCATGCGCGGGTACGGCGATTGCGAGAAGCCGCTCCGCGAGTCGGTCCTGCTGGTGGAGAAGATAGTGCTGCAGCAGCTGCGCGGCATCATGCAGGAAGCGATCGATCACGCCATGTCGCGCCCGAACTCACCGACCCTGTCCCGGCGCGACTTTGAGTACATTATGCGCAAAAATCAGGTGCGCGTGGCGCGGCCTGCAGAAGTACTTCCGCGACATGGCGCTGATG]
[+] EMBL BM586471 [CCGCCCACGCGTCCGCCCACGCGTCCGAAATCCCCTCCCCGGCTGCACGATGGCGAATCTGCGCGATATTACCGCGAAAAAATACGCCCGCCCCACGATCAACGTTGCGATCCATCCGAACCCGGGCACACCGCCGACGGGCGCGGGCCCATCCGCCGACGGCACCGACTACAGGTCCATCTTTTTCAACGAAATCTCACAAATCATGCGCGGGTACGGCGATTGCGAGAAGCCGCTCCGCGAGTCGGTCCTGCTGGTGGAGAAGATAGTGCTGCAGCAGCTGCGCGGCATCATGCAGGAAGCGATCGATCACGCCATGTCGCGCCCGAACTCACCGACCCTGTCCCGGCGCGACTTTGAGTACATTATGCGCAAAAATCAGGTGCGCGTGGCGCGGCCTGCAGAAGTACTTCCGCGACATGGCGCTGATG]
consensusID : consensus_6796#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 407 fasta sequence
[AGGCCNAATTTGGACGAGGCACAAAATCCTCTCCCCGGCTGCACGATGGCGAATCTGCGCGATATTACCGCGAAAAAAATACGCCCGCCCCACGATCAACGTTGCGATCCATCCGAACCCGGGCACACCGCCGACGGGCGCGGGCCCATCCGCGACAGTACCGACTACAGGTCCATCTTTTTCAACGAAATCTCACAAATCATGCGCGGGTACGGCGATTGCGAGAAGCCGCTCCGCGAGTCCGTCCTGCTGGTGGAGAAGATAGTGCTGCAGCAGCTGCGCGGCATCATGCAGGAAGCGATCGATCACGCCATGTCGCGCCCGAACTCACCGACCCTGTCCCGGCGCGACTTTGAGTACATTATGCGCAAAAATCAGGTGCGCCGTGGCGCGGCTGCCGAAGTACT]
[+] EMBL AL694498 [AGGCCNAATTTGGACGAGGCACAAAATCCTCTCCCCGGCTGCACGATGGCGAATCTGCGCGATATTACCGCGAAAAAAATACGCCCGCCCCACGATCAACGTTGCGATCCATCCGAACCCGGGCACACCGCCGACGGGCGCGGGCCCATCCGCGACAGTACCGACTACAGGTCCATCTTTTTCAACGAAATCTCACAAATCATGCGCGGGTACGGCGATTGCGAGAAGCCGCTCCGCGAGTCCGTCCTGCTGGTGGAGAAGATAGTGCTGCAGCAGCTGCGCGGCATCATGCAGGAAGCGATCGATCACGCCATGTCGCGCCCGAACTCACCGACCCTGTCCCGGCGCGACTTTGAGTACATTATGCGCAAAAATCAGGTGCGCCGTGGCGCGGCTGCCGAAGTACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6796#0 AAATCTATTCCAAGCA-CGGCTAACACACACCAAAATCCCCTCCCCGGCTGCACGATGGC 59
consensus_6796#1 -----CCGCCCACGCGTCCGCCCACGCGT-CCGAAATCCCCTCCCCGGCTGCACGATGGC 54
consensus_6796#2 ------AGGCCNAATT-TGGACGAGGCAC---AAAATCCTCTCCCCGGCTGCACGATGGC 50
** * * * ****** ********************
consensus_6796#0 GAATCTGCGCGATATTACCGCGAAAAAA-TACGCCCGCCCCACGATCAACGTTGCGATCC 118
consensus_6796#1 GAATCTGCGCGATATTACCGCGAAAAAA-TACGCCCGCCCCACGATCAACGTTGCGATCC 113
consensus_6796#2 GAATCTGCGCGATATTACCGCGAAAAAAATACGCCCGCCCCACGATCAACGTTGCGATCC 110
**************************** *******************************
consensus_6796#0 ATCCGTACCCGGGCACACCGCCGACGGGCGCGGGCCCATCCGCCGACGGTACCGACTACA 178
consensus_6796#1 ATCCGAACCCGGGCACACCGCCGACGGGCGCGGGCCCATCCGCCGACGGCACCGACTACA 173
consensus_6796#2 ATCCGAACCCGGGCACACCGCCGACGGGCGCGGGCCCATCCGC-GACAGTACCGACTACA 169
***** ************************************* *** * **********
consensus_6796#0 GGTCCATCTTTTTCAACGAAATCTCACAAATCATGCGCGGGTACGGCGATTGCGAGAAGC 238
consensus_6796#1 GGTCCATCTTTTTCAACGAAATCTCACAAATCATGCGCGGGTACGGCGATTGCGAGAAGC 233
consensus_6796#2 GGTCCATCTTTTTCAACGAAATCTCACAAATCATGCGCGGGTACGGCGATTGCGAGAAGC 229
************************************************************
consensus_6796#0 CGCTCCGCGAGTCGGTCCTGCTGGTGGAGAAGATAGTGCTGCAGCAGCTGCGCGGCATCA 298
consensus_6796#1 CGCTCCGCGAGTCGGTCCTGCTGGTGGAGAAGATAGTGCTGCAGCAGCTGCGCGGCATCA 293
consensus_6796#2 CGCTCCGCGAGTCCGTCCTGCTGGTGGAGAAGATAGTGCTGCAGCAGCTGCGCGGCATCA 289
************* **********************************************
consensus_6796#0 TGCAGGAAGCGATCGATCACGCCATGTCGCGCCCGAACTCACCGACCCTGTCCCGGCGCG 358
consensus_6796#1 TGCAGGAAGCGATCGATCACGCCATGTCGCGCCCGAACTCACCGACCCTGTCCCGGCGCG 353
consensus_6796#2 TGCAGGAAGCGATCGATCACGCCATGTCGCGCCCGAACTCACCGACCCTGTCCCGGCGCG 349
************************************************************
consensus_6796#0 ACTTTGAGTACATTATGCGCAAAAATCAGGTGCGC-GTGGCGCGGC-TGCAGAAGTACTT 416
consensus_6796#1 ACTTTGAGTACATTATGCGCAAAAATCAGGTGCGC-GTGGCGCGGCCTGCAGAAGTACTT 412
consensus_6796#2 ACTTTGAGTACATTATGCGCAAAAATCAGGTGCGCCGTGGCGCGGC-TGCCGAAGTACT- 407
*********************************** ********** *** ********
consensus_6796#0 CCGCGACATGGCGCTGATGAAGAAGCGGCTGAAGGATCTGTGCGGTGGCCGCTATCCGCA 476
consensus_6796#1 CCGCGACATGGCGCTGATG----------------------------------------- 431
consensus_6796#2 ------------------------------------------------------------
consensus_6796#0 CCTGAACCTTGGCCCGAGCTCGGAAACGTCCGACGACGATTCGGACCGCGAGGCGCCCGA 536
consensus_6796#1 ------------------------------------------------------------
consensus_6796#2 ------------------------------------------------------------
consensus_6796#0 AAAGTATGACGAGGAAAAGGCCCGCCGGCTGTTCCGGGCGGACCGTATCTCGCAGATCCT 596
consensus_6796#1 ------------------------------------------------------------
consensus_6796#2 ------------------------------------------------------------
consensus_6796#0 CACCGGGCGACAGTACGAGGAGCACATAGCGGCCCGCCGCACCTCCTTCATGCACCGGAA 656
consensus_6796#1 ------------------------------------------------------------
consensus_6796#2 ------------------------------------------------------------
consensus_6796#0 CACGGAGGTGATGAAGAGCCGGATGCGCCAGTGGTTAAACATACCGGAGGATGTGAACAT 716
consensus_6796#1 ------------------------------------------------------------
consensus_6796#2 ------------------------------------------------------------
consensus_6796#0 TACGCAGAGCTGCCTGCTCACGTTGGCGTACCTGGCGCACGAAACGATCGCCGTGCTGGT 776
consensus_6796#1 ------------------------------------------------------------
consensus_6796#2 ------------------------------------------------------------
consensus_6796#0 GGACTTTTGCATCCTGACGCGCCTCAACACGGCCAACCGGACGGTGGATCCGTATAGCCG 836
consensus_6796#1 ------------------------------------------------------------
consensus_6796#2 ------------------------------------------------------------
consensus_6796#0 GGTTACCCCTTCTGGTAAATCGTACAACATGCTGCACGCCTGCCCGGAAGTTTCGCAAGG 896
consensus_6796#1 ------------------------------------------------------------
consensus_6796#2 ------------------------------------------------------------
consensus_6796#0 CCGCGGGCTGGACGGCGTGAAGCCGATCACGCCGCAGGAAATTACCGAAGCGATGCGACG 956
consensus_6796#1 ------------------------------------------------------------
consensus_6796#2 ------------------------------------------------------------
consensus_6796#0 ACACCGCCAGATGGCCATGCGCAGCTCGGGTCGGTACCGAAATGCGCTCAACTTCAAGCC 1016
consensus_6796#1 ------------------------------------------------------------
consensus_6796#2 ------------------------------------------------------------
consensus_6796#0 ACCCTACCTAGCGATGTAATAACGGAAAGAGTCTCTCATGCTTAAACGTAATGTTAAATT 1076
consensus_6796#1 ------------------------------------------------------------
consensus_6796#2 ------------------------------------------------------------
consensus_6796#0 AGCCTTATATTTGTAATAAAAAAACA 1102
consensus_6796#1 --------------------------
consensus_6796#2 --------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||