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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6798#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1067 fasta sequence
[CCGCCCACGCGTCCGCATGCACCGCGTAGGCGATAGTGGTGGAGTCCGCATCCGTCCTTTCTTCAAAGGGACACAACAGGCTCAGAGGTGGTATATTCCACGTAACTTCATCTTCAATTCCCTTCCGAGGGATTTATTCTTATACACACACACATATATATATATACAACACACATTCACCACCATCACCACTACCACCCGCCCCAGAGGCACTGCGCAAAGCAAGCTGTGTGCAATAGACGAGCAGATGTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAAAGAGAGAAAGATGAGGGTGAAAAAGCTGCGAACAATGACGATGCTGCTGCTACGTAGAAAAAAAAAAAACAATGGAATAAAAAGAAACAAAGCAACATTAGATACGGGCACCCACCTCCACCCCATCTACTACTACTACATACACATACACACTCGCGCGCGCATACACTGTCACCGAGAAATAGTAAATGATAAATAATCACTACTAGTAGAGAGACAGAAAGGAACAAGGCGAGACTAAACGAAGGAAGCTTAATGTACGCAAACCATCGCTAGCGGTAATTGCTGCATTGCAATCACCAGCAAAAACCGACCAGCCCACCCACTCACCCACCCTTCTTCACCTTTACCGTGGTCAGAGGGGATGGAAAGAGGAAGCGGTCAGAATTGGATGGAAACGCATTGGTTACGCTAAACAAACTAAGAATCAATCCACCAAAACAAACAAACAAAAACTACCTTTTCACCGTGTGGAATGGGGCTGACGAGAAAGAAACGGGAGGTGCGGAAGCGTTGTGAAAAGCGATCAAAGACATACCGCTTACGCGCGAGCCCTTTCGTACCCTTCGCTCACAGCTGCTAAAAGCTTCTAATCCGCCCTCCTTTAACAATAAAAAACACCGAACGTCTAAAAAAAAATTGGATTTGCCATGGTTGGGCAGGGGAAAGTAGATAGGAGCTATGATATCTATTTGTGCACGTGCGCGCCCGCCCGCGTGTGTGTGTGTGTGTGGGGATGGTATTTGATGGTGGTGGGTAC]
[+] EMBL BM646995 [CCGCCCACGCGTCCGCATGCACCGCGTAGGCGATAGTGGTGGAGTCCGCATCCGTCCTTTCTTCAAAGGGACACAACAGGCTCAGAGGTGGTATATTCCACGTAACTTCATCTTCAATTCCCTTCCGAGGGATTTATTCTTATACACACACACATATATATATATACAACACACATTCACCACCATCACCACTACCACCCGCCCCAGAGGCACTGCGCAAAGCAAGCTGTGTGCAATAGACGAGCAGATGTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAAAGAGAGAAAGATGAGGGTGAAAAAGCTGCGAACAATGACGATGCTGCTGCTACGTAGAAAAAAAAAAAACAATGGAATAAAAAGAAACAAAGCAACATTAGATACGGGCACCCACCTCCACCCCATCTACTACTACTACATACACATACACACTCGCGCGCGCATACACTGTCACCGAGAAATAGTAAATGA GAACAATCACTACTAGTAGAGAGACAGAAAGGAACAAGGCGAGACTAAACGAAGGAAGCTTAATGTACGCAAACCATCGCTAGCGGTAATTGCTGCATTGCAAACA CAGCAAAAACCGACCAGCCCATCCACTCACCCACCCTTCTTCA ]
[+] EMBL BX628764 [ CTGCGAACAATGACGATGCTGCTGCTACGTAGAAAAAAAAAAAACAATGGAATAAAAAGAAACAAAGCAACATTAGATATGGGCACCCACCTCCACCCCATCTACTACTACTACATACACATACACACTCGCGCGCGCATACACTGTCACCGAGAAATAGTAAATGATAAATAATCACTACTAGTAGAGAGACAGAAAGGAACAAGGCGAGACTAAACGAAGGAAGCTTAATGTACGCAAACCATCGCTAGCTGTAATTGCTGCATTGCAATCACCAGCAAAAACCGACCAGCCCACCCACTCACCCACCCTTCTTCACCTTTACCGTGGTCAGAGGGGATGGAAAGAGGAAGCGGTCAGAATTGGATGGAAACGCATTGGTTACGCTAAACAAACTAAGAATCAATCCACCAAAACAAACAAACAAAAACTACCTTTTCACCGTGTGGAATGGGGCTGACGAGAAAGAAACGGGAGGTGCGGAAGCGTTGTGAAAAGCGATCAAAGACATACCGCTTACGCGCGAGCCCTTTCGTACCCTTCGCTCACAGCTGCT ]
[+] EMBL BX609951 [ TGTCACCGAGAAATAGTAAATGATAAATAATCACTACTAGTAGAGAGACAGAAAGGAACAAGGCGAGACTAAACGAAGGAAGCTTAATGTACGCAAACCATCGCTAGCGGTAATTGCTGCATTGCAATCACCAGCAAAAACCGACCAGCCCACCCACTCACCCACCCTTCTTCACCTTTACCGTGGTCAGAGGGGATGGAAAGAGGAAGCGGTCAGAATTGGATGGAAACGCATTGGTTACGCTAAACAAACTAAGAATCAATCCACCAAAACAAACAAACAAAAACTACCTTTTCACCGTGTGGAATGGGGCTGACGAGAAAGAAACGGGAGGTGCGGAAGCGTTGTGAAAAGCGATCAAAGACATACCGCTTACGCGCGAGCCCTTTCGTACCCTTCGCTCACAGCTGCTAAAAGCTTCTAATCCGCCCTCCTTTAACAATAAAAAACACCGAACGTCTAAAAAAAAATTGGATTTGCCATGGTTGGGCAGGGGAAAGTAGATAGGAGCTATGATATCTATTTGTGCACGTGCGCGCCCGCCCGCGTGTGTGTGTGTGTGTGGGGATGGTATTTGATGGTGGTGGGTAC]
consensusID : consensus_6798#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence
[AGAATCGCCACGAGGGCTAGCGAACAATGACGATGCTGCTGCTACGTAGAAAAAATAAAAAACAATGGAATAAAAAGAAACAAAGCAACATTAGATATGGGCACCCAACTCCAACCCATCTACTANTACTACATACACATACACACTCGCGCGCGCATACACTGTCACCGAGAAATAGTAAATGATAAATAATCACTACTANTAGAGAGAGAGACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGATGAGGTGAAAAAGCTGCGAACCAATGACGATGCTGCTGCTACATACACATACACACTCGCGCGCGCATACACTCGTCACCGAGAAATCAGTCAAATGATACACATAATCACTACTAGTCACGAGAGACCGACACAGCGAACCACAGGCCGAGACTAAACGAAAGGAAGCTTAAATGTAACGCAAAACCATACGACTAGACGGGGTGCAATTGGCTCGCACTTTGCGCAAATCACACCAGGCCAAAAAAACCGAAGCCAAGGGCACAA]
[+] EMBL AL697030 [AGAATCGCCACGAGGGCTAGCGAACAATGACGATGCTGCTGCTACGTAGAAAAAATAAAAAACAATGGAATAAAAAGAAACAAAGCAACATTAGATATGGGCACCCAACTCCAACCCATCTACTANTACTACATACACATACACACTCGCGCGCGCATACACTGTCACCGAGAAATAGTAAATGATAAATAATCACTACTANTAGAGAGAGAGACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGATGAGGTGAAAAAGCTGCGAACCAATGACGATGCTGCTGCTACATACACATACACACTCGCGCGCGCATACACTCGTCACCGAGAAATCAGTCAAATGATACACATAATCACTACTAGTCACGAGAGACCGACACAGCGAACCACAGGCCGAGACTAAACGAAAGGAAGCTTAAATGTAACGCAAAACCATACGACTAGACGGGGTGCAATTGGCTCGCACTTTGCGCAAATCACACCAGGCCAAAAAAACCGAAGCCAAGGGCACAA]
consensusID : consensus_6798#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence
[TGTGTGTGTGCGTGTGTTGTAGAAGCGGGTGCAGTGCGTACGCGAATCTGACGCGTAATTTTCCAGCAGGAACTAGCAGCGGCAACAGCTTTTACACTGTTTTATCCCGACCCCGGAAGATACCCTCCCGCAAGGAAGGGGCTCGTGGGCTCAGCCAAGCAATGGGTCGAAGGGGAGGGACAGGACAGGCAAGGTAGTAGTAGTCAGGGAGCAACCGAGACCGAACGGCCTTACCACAACAACAACAACATGTCGATTGGCGAACGGTTGCGCTACGATCAGCATTCGATCTGCGACATGTTTGGGTTCTGAAGCTTAGCTGCTAATGCGCTACCACCTGCCCAACCCTGTCAACATGCACCGCGTAGGCGATAGTGGTGGAGTCCGCATCCGTCCTTTCTTCAAAGGGACACAACAGGCTCAGAGGTGGTATATTCCACGTAACTTCATCTTCTATTTCCCTTCCGAGGGATTTATTCTTATACACATATATGCGTATATATATATA]
[+] EMBL BX626484 [TGTGTGTGTGCGTGTGTTGTAGAAGCGGGTGCAGTGCGTACGCGAATCTGACGCGTAATTTTCCAGCAGGAACTAGCAGCGGCAACAGCTTTTACACTGTTTTATCCCGACCCCGGAAGATACCCTCCCGCAAGGAAGGGGCTCGTGGGCTCAGCCAAGCAATGGGTCGAAGGGGAGGGACAGGACAGGCAAGGTAGTAGTAGTCAGGGAGCAACCGAGACCGAACGGCCTTACCACAACAACAACAACATGTCGATTGGCGAACGGTTGCGCTACGATCAGCATTCGATCTGCGACATGTTTGGGTTCTGAAGCTTAGCTGCTAATGCGCTACCACCTGCCCAACCCTGTCAACATGCACCGCGTAGGCGATAGTGGTGGAGTCCGCATCCGTCCTTTCTTCAAAGGGACACAACAGGCTCAGAGGTGGTATATTCCACGTAACTTCATCTTCTATTTCCCTTCCGAGGGATTTATTCTTATACACATATATGCGTATATATATATA]
consensusID : consensus_6798#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence
[CCCCGAGGTTAACCCACCCTTCTTCACCTTTACCGTGGTCAGAGGGGATGGAAAGAGGAAGCGGTCAGAATTGGATGGAAACGCATTGGTTACGCTAAACAAACTAAGAATCAATCCACCAAAACAAACAAACAAAAACTACCTTTTCACCGTGTGGAATGGGGCTGACGAGAAAGAAACGGGAGGTGCGGAAGCGTTGTGAAAAGCGATCAAAGACATACCGCTTACGCGCGAGCCCTTTCGTACCCTTCGCTCACAGCTGCTAAAAGCTTCTAATCCGCCTCCTTTAACAATAAAAAACACCGAACGTCTAAAAAAAAATTGGATTTGCCATGGTTGGGCAGGGGAAAGTAGATAGGAGCTGATATCTATTTGTGCACGTGCGCGCCCGCGCGCGTGTGTGTGTGTGTGTGGGGATGGTATTTGATGGTGGTGGGTACCGTGGGGTAAGCTAAGCTAAGCTGCATTTTCTGTTGTAAGCT]
[+] EMBL AL692643 [CCCCGAGGTTAACCCACCCTTCTTCACCTTTACCGTGGTCAGAGGGGATGGAAAGAGGAAGCGGTCAGAATTGGATGGAAACGCATTGGTTACGCTAAACAAACTAAGAATCAATCCACCAAAACAAACAAACAAAAACTACCTTTTCACCGTGTGGAATGGGGCTGACGAGAAAGAAACGGGAGGTGCGGAAGCGTTGTGAAAAGCGATCAAAGACATACCGCTTACGCGCGAGCCCTTTCGTACCCTTCGCTCACAGCTGCTAAAAGCTTCTAATCCGCCTCCTTTAACAATAAAAAACACCGAACGTCTAAAAAAAAATTGGATTTGCCATGGTTGGGCAGGGGAAAGTAGATAGGAGCTGATATCTATTTGTGCACGTGCGCGCCCGCGCGCGTGTGTGTGTGTGTGTGGGGATGGTATTTGATGGTGGTGGGTACCGTGGGGTAAGCTAAGCTAAGCTGCATTTTCTGTTGTAAGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6798#0 CCGCCCACGCGTCCGCATGCACCGCGTAGGCGATAGTGGTGGAGTCCGCATCCGTCCTTT 60
consensus_6798#3 ------------------------------------------------------------
consensus_6798#1 ------------------------------------------------------------
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 CTTCAAAGGGACACAACAGGCTCAGAGGTGGTATATTCCACGTAACTTCATCTTCAATTC 120
consensus_6798#3 ------------------------------------------------------------
consensus_6798#1 ------------------------------------------------------------
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 CCTTCCGAGGGATTTATTCTTATACACACACACATATATATATATACAACACACATTCAC 180
consensus_6798#3 ------------------------------------------------------------
consensus_6798#1 ------------------------------------------------------------
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 CACCATCACCACTACCACCCGCCCCAGAGGCACTGCGCAAAGCAAGCTGTGTGCAATAGA 240
consensus_6798#3 ------------------------------------------------------------
consensus_6798#1 ------------------------------------------------------------
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 CGAGCAGATGTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGA 300
consensus_6798#3 ------------------------------------------------------------
consensus_6798#1 ------------------------------------------------------------
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 GAGAGAAAGAGAGAAAGATGAGGGTGAAAAAGCTGCGAACAATGACGATGCTGCTGCTAC 360
consensus_6798#3 ------------------------------------------------------------
consensus_6798#1 ------------------------------------------------------------
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 GTAGAAAAAAAAAAAACAATGGAATAAAAAGAAACAAAGCAACATTAGATACGGGCACCC 420
consensus_6798#3 ------------------------------------------------------------
consensus_6798#1 ------------------------------------------------------------
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 ACCTCCACCCCATCTACTACTACTACATACACATACACACTCGCGCGCGCATACACTGTC 480
consensus_6798#3 ------------------------------------------------------------
consensus_6798#1 ------------------------------------------------------------
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 ACCGAGAAATAGTAAATGATAAATAATCACTACTAGTAGAGAGACAGAAAGGAACAAGGC 540
consensus_6798#3 ------------------------------------------------------------
consensus_6798#1 ------------------------------------------------------------
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 GAGACTAAACGAAGGAAGCTTAATGTACGCAAACCATCGCTAGCGGTAATTGCTGCATTG 600
consensus_6798#3 ------------------------------------------------------------
consensus_6798#1 ------------------------------------------------------------
consensus_6798#2 ------------------------------------------------------------
consensus_6798#0 CAATCACCAGCAAAAACCGACCAGCCCACCCACTCAC--CCACCCTTCTTCACCTTTACC 658
consensus_6798#3 ------------------------CCCCGAGGTTAAC--CCACCCTTCTTCACCTTTACC 34
consensus_6798#1 ---------AGAATCGCCACGAGGGCTAGCGAACAATGACGATGCTGCTGCTACGTAGAA 51
consensus_6798#2 -------TGTGTGTGTGCGTGTGTTGTAGAAGCGGGTG-CAGTGCGTACGCGAATCTGAC 52
* * *
consensus_6798#0 GTGGTCAGAGGGGATGGAA---AGAGGAAGCGGTCAGAATTGGATGGAAACGCATTGGTT 715
consensus_6798#3 GTGGTCAGAGGGGATGGAA---AGAGGAAGCGGTCAGAATTGGATGGAAACGCATTGGTT 91
consensus_6798#1 AAAATAAAAAACAATGGAATAAAAAGAAACAAAGCAACATTAGATATGGGCAC-CCAACT 110
consensus_6798#2 GCGTAATTTTCCAGCAGGAACTAGCAGCGGCAACAGCTTTTACACTGTTTTATCCCGACC 112
* * * ** *
consensus_6798#0 ACGCTAAACAAACTA--AGAATCAATCCACCAAAACAAACAAACAAAAACTACCTTTTCA 773
consensus_6798#3 ACGCTAAACAAACTA--AGAATCAATCCACCAAAACAAACAAACAAAAACTACCTTTTCA 149
consensus_6798#1 CCAACCCATCTACTA--NTACTACATACACATACACACTCGCGCGCGCA-TACACTGTCA 167
consensus_6798#2 CCGGAAGATACCCTCCCGCAAGGAAGGGGCTCGTGGGCTCAGCCAAGCAATGGGTCGAAG 172
* * ** * * * * * * *
consensus_6798#0 CCGTG---TGGAATGGGGCTGACGAGAA------AGAAACGGGAGGTGCGGAAGCGTTGT 824
consensus_6798#3 CCGTG---TGGAATGGGGCTGACGAGAA------AGAAACGGGAGGTGCGGAAGCGTTGT 200
consensus_6798#1 CCGAGAAATAGTAAATGATAAATAATCACTACT-ANTAGAGAGAGAGACGAGAGAGAGAG 226
consensus_6798#2 GGGAGGGACAGGACAGGCAAGGTAGTAGTAGTCAGGGAGCAACCGAGACCGAACGGCCTT 232
* * * * * * * * * *
consensus_6798#0 GAAAAGCGATCAAAGACATACCGCTTACGCGCGAGCCCTTTCG-TACCCTTCGCT-CACA 882
consensus_6798#3 GAAAAGCGATCAAAGACATACCGCTTACGCGCGAGCCCTTTCG-TACCCTTCGCT-CACA 258
consensus_6798#1 AGAGAGAGAGAGAGAGAGAAAAGATGAGGTGAAAAAGCTG-CG-AACCAATGACGATGCT 284
consensus_6798#2 ACCACAACAACAACAACATGTCGATTG---GCGAACGGTTGCGCTACGATCAGCATTCGA 289
* * * * * * * ** ** *
consensus_6798#0 GCTGCTAAAAGCTTCTAATCCGCCCTCCTTTAACAATAAAAAACACCGAACGTCTAAAAA 942
consensus_6798#3 GCTGCTAAAAGCTTCTAATCCGCC-TCCTTTAACAATAAAAAACACCGAACGTCTAAAAA 317
consensus_6798#1 GCTGCTACATACACATA-CACACTCGCGCGCGCATACACTCGTCACCGAGAAATCAGTCA 343
consensus_6798#2 TCTGCGACATGTTTGGGTTCTGAAGCTTAGCTGCTA-ATGCGCTACCACCTGCCCAACCC 348
**** * * * * *** *
consensus_6798#0 AAAATTGGATTTG-CCATGGTTGGGCAGGGGAAAGTAG-ATAG-GAGCTATGATATCTAT 999
consensus_6798#3 AAAATTGGATTTG-CCATGGTTGGGCAGGGGAAAGTAG-ATAG-GAGC--TGATATCTAT 372
consensus_6798#1 AATGATACACATAATCACTACTAGTCACGAGAGACCGACACAGCGAACCACAGGCCGAGA 403
consensus_6798#2 TG---TCAACATG-----CACCGCGTAGGCGATAGTGGTGGAGTCCGCATCCGTCCTTTC 400
* * * * * ** * ** *
consensus_6798#0 TTGTGCACGT----GCGCGCCCGCCCGCG-TGTGTGTGTGTGTGTGGGGATGGTATTTGA 1054
consensus_6798#3 TTGTGCACGT----GCGCGCCCGCGCGCG-TGTGTGTGTGTGTGTGGGGATGGTATTTGA 427
consensus_6798#1 CTAAACGAAA----GGAAGCTTAAATGTAACGCAAAACCATACGACTAGACGGGGTGCAA 459
consensus_6798#2 TTCAAAGGGACACAACAGGCTCAGAGGTGGTATAT-TCCACGTAACTTCATCTTCTATTT 459
* ** * * *
consensus_6798#0 TGGTGGTGGGTAC----------------------------------------------- 1067
consensus_6798#3 TGGTGGTGGGTACCGTGGGGTAAGCTAAGCTAAGCTGCATTTTCTGTTGTAAGCT----- 482
consensus_6798#1 T--TGGCTCGCACT-TTGCGCAAATCACACCAGGCCAAAAAAACCGAAGCCAAGGGCACA 516
consensus_6798#2 CCCTTCCGAGGGATTTATTCTTATACACATATATGCGTATATATATATA----------- 508
* *
consensus_6798#0 -
consensus_6798#3 -
consensus_6798#1 A 517
consensus_6798#2 -
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||