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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6802#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1019 fasta sequence
[CCGCGAGCCTGTATTCAGTGATTTTTCCCTCTTCTTCTGTTTTGTTAGTTTAGTGAAGCGGTGGCTGTACTGTTGTGCCCCCGGAAGTGGCTCACTTTGCCCGCCAGCTTTTGCGCTGTTGCATACCCACCATCCCTTCCCTACCCCTCCTGCTCCCCTGTTCCCTACAGTGTCCACTGATTTACCTACTTCGTTCCGGTGCCATTTTTTGTTGTTGTTGCAGCAGCAGTGTTTGAGGGTGCGTTTGCGTTATAATGCAAACGGGGAGAAAGGAAGGGGAGAAAAAAAAACAAAATATAAATCCACCCCCAGGACGACGACGACGACGCAGGCGAGAAGTTAGAATTGCTATAGTGTGTAAGTACCGTGTAAGACCGAACAGGGGGACAGGGACAGGAGCAGAACGCCCCCGGACGCTCGCTAGTTCCGAATTTCCGGGGGATTAACTTTTGTGTGAGCTCGTACAGTATATAATCCGCACGACTCACACACCTACACACACACACACACACACACACACACAGTACAATGTATGCAAAATCCGAAAACCAACCGTGTATGTGTATGAATGTTCAAATGGTGCAATGGTGTGGCTGGCGGGTGCTTGCTGTTGTTTTTTTCATGTGTGCGTGAAGGCTATCATTTGTTTTCTTATTTATTGTTTTTATTTGTTTTGTTTCTTTCATTTCTTTTTCTTTACCTTTAAACAAAGCAAAAAAAAAGCAAAACATAAGCGTAATTAATCGAACGAATACTAACACAGAAAACGGAAAAGCGAACGGGAAAGGAGTTTGTAAGCAGCAGAAAGCGAACGCAGCAGGCGAAGTAAAGCAGGAGAAAGGTTTTACATGGAGAAATGAGCAGGAAAGGAGGCGAGAAAGGACAACATCTAGAGTGTGTAACAAGCGTCCGATGAGGAAGGTCGCGATTTGCGCTAGCAATGTGCGCAACACAACCGATGTACGTACGCGAGGAAACAATTTGCATGATGATTGTGATGAGAATTTTATCTGTATATA]
[+] EMBL BM641697 [CCGCGAGCCTGTATTCAGTGATTTTTCCCTCTTCTTCTGTTTTGTTAGTTTAGTGAAGCGGTGGCTGTACTGTTGTGCCCCCGGAAGTGGCTCACTTTGCCCGCCAGCTTTTGCGCTGTTGCATACCCACCATCCCTTCCCTACCCCTCCTGCTCCCCTGTTCCCTACAGTGTCCACTGATTTACCTACTTCGTTCCGGTGCCATTTTTTGTTGTTGTTGCAGCAGCAGTGTTTGAGGGTGCGTTTGCGTTATAATGCAAACGGGGAGAAAGGAAGGGGAGAAAAAAAAACAAAATATAAATCCACCCCCAGGACGACGACGACGACGCAGGCGAGAAGTTAGAATTGCTATAGTGT ]
[+] EMBL BX613200 [ AATATAAATCCACCCCCAGGACGACGACGACGACGCAGGCGAGAAGTTAGAATTGCTATAGTGTGTAAGTACCGTGTAAGACCGAACAGGGGGACAGGGACAGGAGCAGAACGCCCCCGGACGCTCGCTAGTTCCGAATTTCCGGGGGATTAACTTTTGTGTGAGCTCGTACAGTATATAATCCGCACGACTCACACACCTACACACACACACACACACACACACACACAGTACAATGTATGCAAAATCCGAAAACCAACCGTGTATGTGTATGAATGTTCAAATGGTGCAATGGTGTGGCTGGCGGGTGCTTGCTGTTGTTTTTTTCATGTGTGCGTGAAGGCTATCATTTGTTTTCTTATTTATTGTTTTTATTTGTTTTGTTTCTTTCATTTCTTTTTCTTTACCTTTAAACAAAGCAAAAAAAAAGCAAAACATAAGCGTAATTAATCGAACGAATACTAACACAGAAAACGGAAAAGCGAACGGGAAAGGAGTTTGTAAGCAGCAGAAAGCGAACGCAGCAGGCGAAGTAAAGCAGGAGAAAGGTTTTACATGGAGAAATGAGCAGGAAAGGAGGCGAGAAAGGACAACATCTAGAGTGTGTAACAAGCGTCCGATGAGGAAGGTCGCGATTTGCGCTAGCAATGTGCGCAACACAACCGATGTACGTACGCGAGGAAACAATTTGCATGATGATTGTGATGAGAATTTTATCTGTATATA]
consensusID : consensus_6802#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 672 fasta sequence
[GATCCCCGAGGTTAA-TGGCACAAACTAAGTCGTACGCACATAAATAATCTTAACGCAAGCGATGTATTGCCACGGATGGTGCGGATACAGTTCTCCCGTTGTT-TTGTGTTTAGTGTTTT-TTTGCGCTCGTAGTGGATGCACTTTGCGCTGCAAGCCGACCGCCGCTGGGTATTTTTTTGCTCCGATGCGTTACTTCCGATATATCATAACGTAAATCTCCATATATATATATAGATATATACACACACACAAAGAAGAAGGAAGAAAAGAAGCAGTCGAAGAGAGGAACAGAACACATATGTATAACACATTAGGCGTAGTGAATCATTTCATTTCGTTTTCATCCTTCCTTCATGGATAAGATAA---A-AAG-AAGAAG-AAGAAGAAGGAAAAAAACAAGTACGAAATATGGAGGAGGCGTCAAGCACGTGCT-CCCATACTGAGTGCTTTACCTTTAAACAAAGCAAAAAAAAAGCAAAACATAAGCGTAATTAATCGAACGAATACTAACACAGAAAACGGAAAAGCGAACGGGAAAGGAGTTTGTAAGCAGCAGAAAGCGAACGCAGCAGGCGAAGTAAAGCAGGAGAAAGGTTTTACATGGAGAAATGAGCAGGAAAGGAGGCGAGAAAGGACAACATCTAGAGTGTGTAACAAGCGTCCGATGAGGAAGGT]
[+] EMBL AL692580 [GATCCCCGAGGTTAA TGGCACAAACTAAGTCGTACGCACATAAATAATCTTAACGCAAGCGATGTATTGCCACGGATGGTGCGGATACAGTTCTCCCGTTGTTATTGTGTTTAGTGTTTTATTTGCGCTCGTAGTGGATGCACTTTGCGCTGCAAGCCGACCGCCGCTGGGTATTTTTTTGCTCCGATGCGTTACTTCCGATATATCATAACGTAAATCTCCATATATATATATAGATATATACACACACACAAAGAAGAAGGAAGAAAAGAAGCAGTCGAAGAGAGGAACAGAACACATATGTATAACACATTAGGCGTAGTGAATCATTTCATTTCGTCTTCATCCTTCCTTCATGGATAAGATAACACANACGCAAGAAGNAAGAAGAAGGAAAAAAACAAGTACGAAATATGGAGGAGGCGTCAAGCACGTGCTCCCCATACTGAGTGCTTTACCTTTAAACAAAGCAAAAAAAAAGCNAAACATAAGCGTNATTAATCGAACGAATACTAACACAGAAAACGGAAAAGCGAACGGGAAAGGAGTNTGTAAGCAGCcag ]
[+] EMBL BM631023 [ aCGACATCAAGTGGCACAAACTAAGTCGTACGCACAGAAATAATCTTAACGCAAGCGATGTATTGCCACGGATGGTGCGGATACAGTTCTCCCGTTGTT TTGTGTTTAGTGTTTT TTTGCGCTCGTAGTGGATGCACTTTGCGCTGCAAGCCGACCGCCGCTGGGTATTTTTTTGCTCCGATGCGTTACTTCCGATATATCATAACGTAAATCTCCATATATATATATAGATATATACACACACACAAAGAAGAAGGAAGAAAAGAAGCAGTCGAAGAGAGGAACAGAACACATATGTATAACACATTAGGCGTAGTGAATCATTTCATTTCGTTTTCATCCTTCCTTCATGGATAAGATAA A AAG AAGAAG AAGAAGAA GAAAAAAACAAGTACGAAATATGGAGGAGGCGTCAAGCACGTGCT CCCATACTGAGTGCTTTACCTTTAAACAAAGCAAAAAAAAAGCAAAACATAAGCGTAATTAATCGAACGAATACTAACACAGAAAACGGAAAAGCGAACGGGAAAGGAGTTTGTAAGCAGCAGAAAGCGAACGCAGCAGGCGAAGTAAAGCAGGAGAAAGGTTTTACATGGAGAAATGAGCAGGAAAGGAGGCGAGAAAGGACAACATCTAGAGTGTGTAACAAGCGTCCGATGAGGAAGGT]
[+] EMBL BX617299 [ TGTATTGCCACGGATGGTGCGGATACAGTTCTCCCGTTGTT TTGTGTTTAGTGTTTT TTTGCGCTCGTAGTGGATGCACTTTGCGCTGCAAGCCGACCGCCGCTGGGTATTTTTTTGCTCCGATGCGTTACTTCCGATATATCATAACGTAAATCTCCATATATATATATAGATATATACACACACACAAAGAAGAAGGAAGAAAAGAAGCAGTCGAAGAGAGGAACAGAACACATATGTATAACACATTAGGCGTAGTGAATCATTTCATTTCGTTTTCATCCTTCCTTCATGGATAAGATAA A AAG AAGAAG AAGAAGAAGAAAAAAAACAAGTACGAAATATGGAGGAGGCGTCAAGCACGTGCT CCCATACTGAGTGCTTTACCTTTAAACAAAGCAAAAAAAAAGCAAAACATAAGCGTAATTAATCGAACGAATACTAACACAGAAAACGGAAAAGCGAACGGGAAAGGAGTTTGTAAGCAGCAGAAAGCGAACGCAGCAGGCGAAGTAAAGCAGGAGAAAGGTTTTACATGGAGAAATGAGCAGGA ]
consensusID : consensus_6802#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence
[CCGACTGATTTACCTACTTCGTTCCGGTGCCATTTTTTGTTGTTGTTGTTGCAGCAGCAGTGTTTGAGGGTGCGTTTGCGTTATAATGCAAACGGGGAGAAAGGAAGGGGAAAAATATAAATCCACCCCCAGGACGACGACGACGACGCAGGCGAGAAGTTAGAATTGCTATAGTGTGTAAGTACCGTGTAAGACCGAACAGGGGGACAGGGACAGGAGCAGAACGCCCCCGGACGCTCGCTAGTTCCGAATTTCCGGGGGATTAACTTTTGTGTGAGCTCGTACAGTATATAATCCGCACGACTCACACACCTACACACACACACACACACACACACACACAGTACAATGTATGCAAAATCCGAAAACCAACCGTGTATGTGTATGAATGTTCAAATGGTGCAATGGTGTGGCTGGCGGGTGCTTGCTGTTGTTTTTTTCATGTGTGCGTGAAGGCTATCATTTGTTTTCTTATTTATTGTTTTTATTTGGTGTGTTTCTTTCATTTCTTTTTCTTTACCTTCACTTT]
[+] EMBL BM596008 [CCGACTGATTTACCTACTTCGTTCCGGTGCCATTTTTTGTTGTTGTTGTTGCAGCAGCAGTGTTTGAGGGTGCGTTTGCGTTATAATGCAAACGGGGAGAAAGGAAGGGGAAAAATATAAATCCACCCCCAGGACGACGACGACGACGCAGGCGAGAAGTTAGAATTGCTATAGTGTGTAAGTACCGTGTAAGACCGAACAGGGGGACAGGGACAGGAGCAGAACGCCCCCGGACGCTCGCTAGTTCCGAATTTCCGGGGGATTAACTTTTGTGTGAGCTCGTACAGTATATAATCCGCACGACTCACACACCTACACACACACACACACACACACACACACAGTACAATGTATGCAAAATCCGAAAACCAACCGTGTATGTGTATGAATGTTCAAATGGTGCAATGGTGTGGCTGGCGGGTGCTTGCTGTTGTTTTTTTCATGTGTGCGTGAAGGCTATCATTTGTTTTCTTATTTATTGTTTTTATTTGGTGTGTTTCTTTCATTTCTTTTTCTTTACCTTCACTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6802#0 CCGCGAGCCTGTATTCAGTGATTTTTCCCTCTTCTTCTGTTTTGTTAGTTTAGTGAAGCG 60
consensus_6802#2 ------------------------------------------------------------
consensus_6802#1 ------------GATCCCCGAGGTTAATGGCACAAACTAAGTCGTACGCACATAAATAAT 48
consensus_6802#0 GTGGCTGTACTGTTGTGCCCCCGGAAGTGGCTCACTTTGCCCGCCAGCTTTTGCGCTGTT 120
consensus_6802#2 ------------------------------------------------------------
consensus_6802#1 CTTAACGCAAGCGATGTATTGCCACGGATGGTGCGGATACAGTTCTCCCGTTGTTTTGTG 108
consensus_6802#0 GCATACCCACCATCCCTTCCCTACCCCTCCTGCTCCCCTGTTCCCTACAGTGTCCACTGA 180
consensus_6802#2 ----------------------------------------------------CCGACTGA 8
consensus_6802#1 TTTAGTGTTTTTTTGCGCTCGTAGTGGATGCACTTTGCGCTGCAAGCCGACCGCCGCTGG 168
* ***
consensus_6802#0 TTTACCTACTTCGTTCCGGTGCCATTTTTTGTTGTTGTTG---CAGCAGCAGTGTTTGAG 237
consensus_6802#2 TTTACCTACTTCGTTCCGGTGCCATTTTTTGTTGTTGTTGTTGCAGCAGCAGTGTTTGAG 68
consensus_6802#1 GTATTTT--TTTGCTCCGATGCGTTACTTCCGATATATCA---TAACGTAAATCTCCATA 223
* * ** * **** *** * ** * * * * * * *
consensus_6802#0 GGTGCGTTTGCGT-TATA-ATGCAAACGGGGAGAAAGGAAGGGGAGAAAAAAAAACAAAA 295
consensus_6802#2 GGTGCGTTTGCGT-TATA-ATGCAAACGGGGAGAAAGGAAGGGGA-----------AAAA 115
consensus_6802#1 TATATATATAGATATATACACACACACAAAGAAGAAGGAAGAAAAGA---------AGCA 274
* * * * **** * ** ** ** ******* * * *
consensus_6802#0 TATAAATCCACCCCCAGGACGACGACG-ACGACGCAGGCGAGAAGTTAGAATTGCTATAG 354
consensus_6802#2 TATAAATCCACCCCCAGGACGACGACG-ACGACGCAGGCGAGAAGTTAGAATTGCTATAG 174
consensus_6802#1 GTCGAAGAGAGGAACAGAACACATATGTATAACACATTAGGCGTAGT-GAATCATTTCAT 333
** * *** ** * * * ** ** * * **** * *
consensus_6802#0 TGTGTAAGTACCGTGTAAGACCGAACAGGGGGACAGGGACAGGAGCAGAACGCCCCCGGA 414
consensus_6802#2 TGTGTAAGTACCGTGTAAGACCGAACAGGGGGACAGGGACAGGAGCAGAACGCCCCCGGA 234
consensus_6802#1 TTCGTTTTCATCCTTCCTTCATGGATAAGATAAAAAGAAGAAGAAGAAGAAG------GA 387
* ** * * * * * * * * * * * * ** * * * **
consensus_6802#0 CGCTCGCTAGTTCCGAATTTCCGGGGGATTAACTTTTGTGTGAGCTCGTACAGTATATAA 474
consensus_6802#2 CGCTCGCTAGTTCCGAATTTCCGGGGGATTAACTTTTGTGTGAGCTCGTACAGTATATAA 294
consensus_6802#1 AAAAAACAAGTACGAAATATGGAGGAGGCG---TCAAGCACGTGCTCCCATACTGAGTGC 444
* *** * *** * ** * * * * **** * * * *
consensus_6802#0 TCCGCACGACTCACACACCTACACACACACACACACACACACACACACAGTACAATGTAT 534
consensus_6802#2 TCCGCACGACTCACACACCTACACACACACACACACACACACACACACAGTACAATGTAT 354
consensus_6802#1 TTTAC-CTTTAAACAAAGCAAAAAAAAAGCA-AAACATAAGCGTAATTAATCGAACGAAT 502
* * * *** * * * * * * ** * *** * * * * * ** * **
consensus_6802#0 GCAAAATCCGAAAACC-AACCGTGTATGTGTATGAATGTT-CAAATGGTGCAATG---GT 589
consensus_6802#2 GCAAAATCCGAAAACC-AACCGTGTATGTGTATGAATGTT-CAAATGGTGCAATG---GT 409
consensus_6802#1 ACTAACACAGAAAACGGAAAAGCGAACGGGAAAGGAGTTTGTAAGCAGCAGAAAGCGAAC 562
* ** * ****** ** * * * * * * * * ** ** * ** *
consensus_6802#0 GTGGCTGGCGGGTGCTTGCTGTTGTTTTTTTCATGTGTGCGTGAAGGCTATCATTTGTTT 649
consensus_6802#2 GTGGCTGGCGGGTGCTTGCTGTTGTTTTTTTCATGTGTGCGTGAAGGCTATCATTTGTTT 469
consensus_6802#1 GCAGCAGGCGAAGTAAAGCAGGAGAAAGGTTT---TACATGGAGAAATGAGCAGGAAAGG 619
* ** **** ** * * ** * * * * **
consensus_6802#0 TCTTATTTATTGTTTTTATTTGTTTTGTTTCTTTCATTTCTTTTTCTTTACCTTTAAACA 709
consensus_6802#2 TCTTATTTATTGTTTTTATTTGGTGTGTTTCTTTCATTTCTTTTTCTTTACCTTCACTTT 529
consensus_6802#1 AGGCGAGAAAGGACAACATCTAGAGTGTGTAACAAGCGTCCGATGAGGAAGGT------- 672
* * ** * *** * ** * * *
consensus_6802#0 AAGCAAAAAAAAAGCAAAACATAAGCGTAATTAATCGAACGAATACTAACACAGAAAACG 769
consensus_6802#2 ------------------------------------------------------------
consensus_6802#1 ------------------------------------------------------------
consensus_6802#0 GAAAAGCGAACGGGAAAGGAGTTTGTAAGCAGCAGAAAGCGAACGCAGCAGGCGAAGTAA 829
consensus_6802#2 ------------------------------------------------------------
consensus_6802#1 ------------------------------------------------------------
consensus_6802#0 AGCAGGAGAAAGGTTTTACATGGAGAAATGAGCAGGAAAGGAGGCGAGAAAGGACAACAT 889
consensus_6802#2 ------------------------------------------------------------
consensus_6802#1 ------------------------------------------------------------
consensus_6802#0 CTAGAGTGTGTAACAAGCGTCCGATGAGGAAGGTCGCGATTTGCGCTAGCAATGTGCGCA 949
consensus_6802#2 ------------------------------------------------------------
consensus_6802#1 ------------------------------------------------------------
consensus_6802#0 ACACAACCGATGTACGTACGCGAGGAAACAATTTGCATGATGATTGTGATGAGAATTTTA 1009
consensus_6802#2 ------------------------------------------------------------
consensus_6802#1 ------------------------------------------------------------
consensus_6802#0 TCTGTATATA 1019
consensus_6802#2 ----------
consensus_6802#1 ----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||