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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6809#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1134 fasta sequence
[CCGCCAAGACCTGCTACGTTCACTCTACGCCAGCTGACGGAAGAGATGTCATCTGCTAGAGTTCCACCACAACAGCAGCAGCAGCAGCAG---CAGCAGCAGGCGCCGGAGTTTTACGGTCCAGACACGCCAACGTTCGATCTGAGCTGGGACTACAACTACGACAATGCACTAGCAGCGCCACCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCACAATCGCAGCAGCATGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACCGGGGGACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCACCACGTGCCGGGCTCGACTTTCTCTACGGATTGCCGTCGGTGTTTATCCAGCAGAGCTACGAGCTGAACGAATTACTATCGGGCGTTGCCTCGGACAATCGGTTCACGGTACGGGGACCCTCAAACGAAGCGCTCTACGGTGCATCAGAAACGTCCGACCCGAAGGATCGGTTCTGGGGCTCGCTACGACCGTTCAGCCTGTCGCTTGTGGACCGCAGCCATCAGGAGGTGCTACTGTTCAAGAAGAATCTTGGCTGCGGTGTGTTCTGCTGCTTCTGCAAGAACCAGTTTCCGGAGGTGTGGGCCGCACCGGGCGAGCTGATCGGCTGCATCCAGCAGGACTACGGCGTACTGTCACAGGAGATCGTGCTGCTGAACAGTGACATTAACACGATGTTCCGCATACCGATACCGTTCCTGAACGCGCTGCGCATGCCGAAGGAGACACACTTTCGCGTGCTGGACCGGGACCGGATGACGCAGAAGGGAACGATAACGCGCGCCTGGAACGTGAACACCGCCAGCTACACGAACAACATCTACTACTCCGACCCGACGATGGACGTCAAGTTTAAGTCGCTGTTCATAGCGGCCGCCTTCATGCTGGAATATCTTTACTTTCAATCGAATTGTTGTTAAGAGGACGTGTGTTGTGGACCCCCATCACCACTGATGAAGTGAGAGACAGGAAAAGCAATTTCATACTGAATTGAGCAGAGCAGTACATATTTATAAAGTACACATTCTTTCGTTTGATAAGAAAAGAAACATTAAAAAATGGCATGATGT]
[+] EMBL BM609297 [CCGCCAAGACCTGCTACGTTCACTCTACGCCAGCTGACGGAAGAGATGTCATCTGCTAGAGTTCCACCACAA CAGCAGCAGCAGCAG CAGCAGCAGGCGCCGGAGTTTTACGGTCCAGACACGCCAACGTTCGATCTGAGCTGGGACTACAACTACGACAATGCACTAGCAGCGCCACCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCACAATCGCAGCAACATGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACTGGGGGACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCACCACGGGCCGGGCTCGACTTTCTCTACGGATTGCCGTCGGTGTTTATCCAGCAGAGCTACGAGCTGAACGAATTACTATCGGGCGTTGCCTCGGACAATCGGTTCACGGTACGGGGACCCTCAAACGAAGCGCTCTACGGTGCATCAGAAACGTCCGACCCGAAGGATCGGTTCTGGGGCTCGCTACGACCGTTCAGCCTGTCGCTTGTGGACCGCAGCCATCAGGAGGTGCTACTGTTCAAGAAGAATCTTGGCTGCGGTGTGTTCTGCTGCTTCTGCAAGAACCAGTTTCC ]
[+] EMBL CNS08GAF [ tttccatatCTGCTACGTTCACTCTACGCCAGCTGACGGAAGAGATGTCATCTGCTAGAGTTCCACCACAACAGCAGCAGCAGCAGCAGCACCAGCAGCAGGCGCCGGAGTTTTACGGTCCAGACACGCCAACGTTCGATCTGAGCTGGGACTACAACTACGACAATGCGCTA CAGCTCCACCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCACAATCGCAGCAGCATGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACCGGGGGACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCACCACGTGCCGGG ]
[+] EMBL BX621837 [ TACGTTCACTCTACGCCGGCTGACGGAAGAGATGTCATCTGCTAGAGTTCCACCACAACAGCAGCAGCAGCAGCAG CAGCAGCAGGCGCCGGAGTTTTACGGTCCAGACACGCCAACGTTCGATCTGAGCTGGGACTACAACTACGACAATGCACTAGCAGCGCCACCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCACAATCGCAGCAGCGTGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACCCGGGGACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCGCCACGTGCCGGGCTCGACTTTCTCTACGGATTGCCGTCGGTGTTTATCCAGCAGAGCTACGAGCTGAACGAATTACTATCGGGCGTTGCCTC ]
[+] EMBL BX628287 [ GCGCCACCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCACAATCGCAGCAGCGTGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACCCGGGGACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCGCCACGTGCCGGGCTCGACTTTCTCTACGGATTGCCGTCGGTGTTTATCCAGCAGAGCTACGAGCTGAACGAATTACTATCGGGCGTTGCCTCGGACAATCGGTTCACGGTACGGGGACCCTCAAACGAAGCGCTCTACGGTGCATCAGAAACGTCCGACCCGAAGGATCGGTTCTGGGGCTCGCTACGACCGTTCAGCCTGTCGCTTGTGGACCGCAGCCATCAGGAGGTGCTACTGTTCAGGAAGAATCTTGGCTGCGGTGTGTTCTGCTGCTTCTGCAAGAACCAGTTCCTGGAGGTGTGGGCCGCACCGGGCGAGCTGATCGGCTGCATCCAGCAGGACTACGGCGTACTGTCACAGGAGATCGTGCTGCTGAACAGTGACATTAACACGATGTTCCGCATACCGATACCGTTCCTGAACGCGCTGCGCATGCCGAAGGAGACACACTTTCGCGTGCTGGACCGGGACCGGATGACGCAGAAGGGAACGATAACGCGCGCCTGGAACGTGAACACCGCCAGCTACACGAACAACATCTACTACTCCGACCCGACGATG ]
[-] EMBL CNS08GAG [ CGTGCTGGACCGGGATCGGATGACGCAGAAGGGAACGATAACGCGCGCCTGGAACGTGAACACCGCCAGCTACACGAACAACATCTACTACTCCGACCCGACGATGGACGTCAAGTTTAAGTCGCTGTTCATAGCGGCCGCCTTCATGCTGGAATATCTTTACTTTCAATCGAATTGTTGTTAAGAGGACGTGTGTTGTGGACCCCCATCACCACTGATGAAGTGAGAGACAGGAAAAGCAATTTCATACTGAATTGAGCAGAGCAGTACATATTTATAAAGTACACATTCTTTCGTTTGATAAGAAAAGAAACATTAAAAAATGGCATGATGT]
consensusID : consensus_6809#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGTTTACGGTCCAGACACGCCAACGTTCGATCTGAGCTGGGACTACAACTACGACAATGCACTAGCAGCGCCACCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCACAATCGCAGCAGCGTGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACCCGGGGACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCGCCACGTGCCGGGCTCGACTTTCTCTACGGATTGCCGTCGGTGTTTATCCAGCAGAGCTACGAGCTGAACGAATGTAAGACCGTTGAACAGCCGTTTTGAACAATCGCTCATAATCCTACTTCGGACGCGTACCCCATTTTGCAGTACTATCGGGCGTTGCCTCGGACAATCGGTTCACGGTACGGGGACCCTCAAACGAAGCGCTCTACGGTGCATCAGAAACGTCCGACCCGAAGGATCGGTTCTGGGGCTCGCTACGACCGTTCAGCCTGTCGCTTGTGGACCGCAGCCATCAGGAGGTGCTACTGTTCAGGAAG]
[+] EMBL BM617692 [CCGCGGACGCGTGGGCGGACGCGTGGGTTTACGGTCCAGACACGCCAACGTTCGATCTGAGCTGGGACTACAACTACGACAATGCACTAGCAGCGCCACCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCACAATCGCAGCAGCGTGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACCCGGGGACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCGCCACGTGCCGGGCTCGACTTTCTCTACGGATTGCCGTCGGTGTTTATCCAGCAGAGCTACGAGCTGAACGAATGTAAGACCGTTGAACAGCCGTTTTGAACAATCGCTCATAATCCTACTTCGGACGCGTACCCCATTTTGCAGTACTATCGGGCGTTGCCTCGGACAATCGGTTCACGGTACGGGGACCCTCAAACGAAGCGCTCTACGGTGCATCAGAAACGTCCGACCCGAAGGATCGGTTCTGGGGCTCGCTACGACCGTTCAGCCTGTCGCTTGTGGACCGCAGCCATCAGGAGGTGCTACTGTTCAGGAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6809#0 CCGCCAAGACCTGCTACGTTCACTCTACGCCAGCTGACGGAAGAGATGTCATCTGCTAGA 60
consensus_6809#1 ------------------------------------------------------------
consensus_6809#0 GTTCCACCACAACAGCAGCAGCAGCAGCAGCAGCAGCAGGCGCCGGAGTTTTACGGTCCA 120
consensus_6809#1 ---------------------CCGCGGACGCGTGGGCGGACGC-GTGGGTTTACGGTCCA 38
* ** * ** ** * *** * * ***********
consensus_6809#0 GACACGCCAACGTTCGATCTGAGCTGGGACTACAACTACGACAATGCACTAGCAGCGCCA 180
consensus_6809#1 GACACGCCAACGTTCGATCTGAGCTGGGACTACAACTACGACAATGCACTAGCAGCGCCA 98
************************************************************
consensus_6809#0 CCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCA 240
consensus_6809#1 CCGAACAATGTGCCACCTGTCGTGCACAGTGGCGAGAATCGAATCATCACGGCACAACCA 158
************************************************************
consensus_6809#0 CAATCGCAGCAGCATGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACCGGGG 300
consensus_6809#1 CAATCGCAGCAGCGTGAACGAGACGGTGTAAGCTTACGAATACCTTCACCCCCACCCGGG 218
************* ****************************************** ***
consensus_6809#0 GACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCACCACGTGCCGGGCTC 360
consensus_6809#1 GACGCAATTCGCTCCGTAAACAGCCCCTTTCTAACGCCGTTCTCGCCACGTGCCGGGCTC 278
******************************************** ***************
consensus_6809#0 GACTTTCTCTACGGATTGCCGTCGGTGTTTATCCAGCAGAGCTACGAGCTGAACGAAT-- 418
consensus_6809#1 GACTTTCTCTACGGATTGCCGTCGGTGTTTATCCAGCAGAGCTACGAGCTGAACGAATGT 338
**********************************************************
consensus_6809#0 ------------------------------------------------------------
consensus_6809#1 AAGACCGTTGAACAGCCGTTTTGAACAATCGCTCATAATCCTACTTCGGACGCGTACCCC 398
consensus_6809#0 ---------TACTATCGGGCGTTGCCTCGGACAATCGGTTCACGGTACGGGGACCCTCAA 469
consensus_6809#1 ATTTTGCAGTACTATCGGGCGTTGCCTCGGACAATCGGTTCACGGTACGGGGACCCTCAA 458
***************************************************
consensus_6809#0 ACGAAGCGCTCTACGGTGCATCAGAAACGTCCGACCCGAAGGATCGGTTCTGGGGCTCGC 529
consensus_6809#1 ACGAAGCGCTCTACGGTGCATCAGAAACGTCCGACCCGAAGGATCGGTTCTGGGGCTCGC 518
************************************************************
consensus_6809#0 TACGACCGTTCAGCCTGTCGCTTGTGGACCGCAGCCATCAGGAGGTGCTACTGTTCAAGA 589
consensus_6809#1 TACGACCGTTCAGCCTGTCGCTTGTGGACCGCAGCCATCAGGAGGTGCTACTGTTCAGGA 578
********************************************************* **
consensus_6809#0 AGAATCTTGGCTGCGGTGTGTTCTGCTGCTTCTGCAAGAACCAGTTTCCGGAGGTGTGGG 649
consensus_6809#1 AG---------------------------------------------------------- 580
**
consensus_6809#0 CCGCACCGGGCGAGCTGATCGGCTGCATCCAGCAGGACTACGGCGTACTGTCACAGGAGA 709
consensus_6809#1 ------------------------------------------------------------
consensus_6809#0 TCGTGCTGCTGAACAGTGACATTAACACGATGTTCCGCATACCGATACCGTTCCTGAACG 769
consensus_6809#1 ------------------------------------------------------------
consensus_6809#0 CGCTGCGCATGCCGAAGGAGACACACTTTCGCGTGCTGGACCGGGACCGGATGACGCAGA 829
consensus_6809#1 ------------------------------------------------------------
consensus_6809#0 AGGGAACGATAACGCGCGCCTGGAACGTGAACACCGCCAGCTACACGAACAACATCTACT 889
consensus_6809#1 ------------------------------------------------------------
consensus_6809#0 ACTCCGACCCGACGATGGACGTCAAGTTTAAGTCGCTGTTCATAGCGGCCGCCTTCATGC 949
consensus_6809#1 ------------------------------------------------------------
consensus_6809#0 TGGAATATCTTTACTTTCAATCGAATTGTTGTTAAGAGGACGTGTGTTGTGGACCCCCAT 1009
consensus_6809#1 ------------------------------------------------------------
consensus_6809#0 CACCACTGATGAAGTGAGAGACAGGAAAAGCAATTTCATACTGAATTGAGCAGAGCAGTA 1069
consensus_6809#1 ------------------------------------------------------------
consensus_6809#0 CATATTTATAAAGTACACATTCTTTCGTTTGATAAGAAAAGAAACATTAAAAAATGGCAT 1129
consensus_6809#1 ------------------------------------------------------------
consensus_6809#0 GATGT 1134
consensus_6809#1 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||