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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6827#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1385 fasta sequence
[ATTCCACGTTTGCAGGCAGAATTGCAGCAGAAAATCAGTGAATCTAGGAAAATTGTGGATCTCTACAGGCCTATTATCGATGCGTACATTGTGGATTTCTTCCACCTGAATCACTGGAACAGNTTACCTTCGAGCTGGATTCGCTGTTTCAGTACCATCCCGATCGAGCATCTTCCAGCTCTCCTGTCCTTTGAGAGCAGAAAAACAGAAACAACTGTGTTGCCTTTGACGGTGCTTACCCTGCGATCGCTTTTCCGCCGATTAGTACACACTAGGAGCAAACCTAAGACCACCGAAAAGCACCCAACCGACCCAAACTGTGTTTATTACAAACAATCTAATTTGTTTCATAAGTCGGTCAAACTGAAAAAGCGTCACGAAATAGAGCAGTTTGCCACTAACTGTTCGCGTGAAAACAATTGCCGCACGCTGGTCGATATTGGCTCGGGACAGGGGAATCTAGCACGCACGCTTGCCTACGGATTTGGTTTCCGCGTGTGCTGTCTCGAACAGAATGAGTCGTTCGTTCAAGCCGCAAGACAAAAGGACGCAGAACTCTGGCGTCGGTTATTAAAACACGAGCCAAAGCTGCAAAACACTACCACCACCACAGCACACCCGGTCCATCTGCACGAAAAGGNCAACCTTGATCACATTGACCCGAATGCTTTCGAGCAACTGCTACGGGATGCACTAAACATCGAAAAAGGTCAACATCCCGATGCACTCCAATTCGGACTAATTGGACTTCATCCGTGCGGTGATCTAGCCCCCTCTTTGTTGCGCCTCTTTCTTGCCTGCCGGGAGTGTCGCTTCATTAAGCTCGTTTGCTGCTGCTACATGAAGCTTTCCTGCGAGAGCTCGATATCGAACGGCGAGTTAAAGGAGTACGGATTCCCTTTAAGCGACTTTTGTCGTCGTACCAATCTCACCCTGAGCTACGAAGCGCGTGAAATGGCCTGCCATGCGATTGAACAGTACCGGG-AAAGGCTGAGTGGTGATTATCACGAGCT-TAAGATACACGCTTACCGTGCTGCGATCGAAAGTATTATCGTTCGTTTGCGTCCCGATTTAAAGCATGCTGGGCTGAAG-GGTGGCATCAGGGCGACG-G-AGGTAAGCTTCGCCGAATACTGCCAACGAGCGGTCGATGGACTGGGGATCACTGTGCCGGAGAGCGATGTCCACTCGGCG-GCA-ACAC--AATCTCGGCTCAGCCGATGGGAAGA-GGTT-GT-AAAGTTTTACACG-ATAAGACTGA-TGTTTGC-TCCACTGATAG-AAAC-GATCGTCCTGTACGATCGTTGGTTGTTTCTACTGGAACAAGGCACCAACGCGCGTATCGATGTTCTGTTCGATCCGTACCTTTCACCACGGAACCATGTCATCACCGCCTA]
[+] EMBL BX627063 [ATTCCACGTTTGCAGGCAGAATTGCAGCAGAAAATCAGTGAATCTAGGAAAATTGTGGATCTCTACAGGCCTATTATCGATGCGTACATTGTGGATTTCTTCCACCTGAATCACTGGAACAGNTTACCTTCGAGCTGGATTCGCTGTTTCAGTACCATCCCGATCGAGCATCTTCCAGCTCTCCTGTCCTTTGAGAGCAGAAAAACAGAAACAACTGTGTTGCCTTTGACGGTGCTTACCCTGCGATCGCTTTTCCGCCGATTAGTACACACTAGGAGCAAACCTAAGACCACCGAAAAGCACCCAACCGACCCAAACTGTGTTTATTACAAACAATCTAATTTGTTTCATAAGTCGGTCAAACTGAAAAAGCGTCACGAAATAGAGCAGTTTGCCACTAACTGTTCGCGTGAAAACAATTGCCGCACGCTGGTCGATATTGGCTCGGGACAGGGGAATCTAGCACGCACGCTTGCCTACGGATTTGGTTTCCGCGTGTGCTGTCTCGAACAGAATGAGTCGTTCGTTCAAGCCGCAAGACAAAAGGACGCAGAACTCTGGCGTCGGTTATTAAAACACGAGCCAAAGCTGCAAAACACTACCACCACCACAGCACACCCGGTCCATCTGCACGAAAAGGNCAACCTTGATCACATTGACCCGAATGCTTTCGAGCAACTGCTACNGGATGCACTAAACATCG AAAANGNCAACATCCCGATGCACTCCAATTCNGACTAATTGGACTTCATCCGNGCGGGGATCTAGCCCCCTCTTTGTTGCGCCTCTTTCTTGC ]
[+] EMBL BX626622 [ TTGGCTCGGGACAGGGGAATCTAGCACGCACGCTTGCCTACGGATTTGGTTTCCGCGTGTGCTGTCTCGAACAGAATGAGTCGTTCGTTCAAGCCGCAAGACAAAAGGACGCAGAACTCTGGCGTCGGTTATTAAAACACGAGCCAAAGCTGCAAAACACTACCACCACCACAGCACACCCGGTCCATCTGCACGAAAAGGTCAACCTTGATCACATTGACCCGAATGCTTTCGAGCAACTGCTACGGGATGCACTAAACATCGAAAAAGGTCAACATCCCGATGCACTCCAATTCGGACTAATTGGACTTCATCCGTGCGGTGATCTAGCCCCCTCTTTGTTGCGCCTCTTTCTTGCCTGCCGGGAGTGTCGCTTCATTAAGCTCGTTTGCTGCTGCTACATGAAGCTTTCCTGCGAGAGCTCGATATCGAACGGCGAGTTAAAGGAGTACGGATTCCCTTTAAGCGACTTTTGTCGTCGTACCAATCTCACCCTGAGCTACGAAGCGCGTGAAATGGCCTGCCATGCGATTGAACAGTACCGGG AAAGGCTGAGTGGTGATTATCACGAGCT TAAGATACACGCTTACCGTGCTGCGATCGAAAGTATTATCGTTCGTTTGCGTCCCGATTTAAAGCATG ]
[+] EMBL AL694828 [ ccgagtttAATGCTTTCGAGC ACTGCTACGGGATGCACTAAACATCGAAAAAGGTCAACATCCCGATGCACTCCAATTCGGACTAATTGGACTTCATCCGTGCGGTGATCTAGCCCCCTCTTTGTTGCGCCTCTTTCTTGCCTGCCGGGAGTGTCGCTTCATTAAGCTCGTTTGCTGCTGCTACATGAAGCTTTCCTGCGAGAGCTCGATATCGAACGGCGAGTTAAAGGAGTACGGATTCCCTTTAAGCGACTTTTGTCGTCGTACCAATCTCACCCTGAGCTACGAAGCGCGTGAAATGGCCTGCCATGCGATTGAACAGTACCGGGCAAAGGCTGAGTGGTGATTATCACGAGCTNTAAGATACACGCTTACCGTGCTGCGATCGAAAGTATTATCGTTCGTTTGCGTCCCGATTTAAAGCATGCTGGGCTGAAGCGGTGGCATCAGGGCGACGCGCCGGTAAGCTTCGCCGAATACTGCCAACGAGCGGTCGATGGACTGGGGATCACTGTGCCGGAGAGCGATGTCCACTCGGCGTGCACACACCAAATCTCGGCTCAGCCGATGGGANGACGGTTCGTCACAGTTTTACACGNATNAGACTGACTGTNTGCGTCCACTGATAGCAAACGGATCGTCCTGTACG ]
[+] EMBL BX628750 [ ACTGCTACGGGATGCACTAAACATCGAAAAAGGTCAACATCCCGATGCACTCCAATTCGGACTAATTGGACTTCATCCGTGCGGTGATCTAGCCCCCTCTTTGTTGCGCCTCTTTCTTGCCTGCCGGGAGTGTCGCTTCATTAAGCTCGTTTGCTGCTGCTACATGAAGCTTTCCTGCGAGAGCTCGATATCGAACGGCGAGTTAAAGGAGTACGGATTCCCTTTAAGCGACTTTTGTCGTCGTACCAATCTCACCCTGAGCTACGAAGCGCGTGAAATGGCCTGCCATGCGATTGAACAGTACCGGG AAAGGCTGAGTGGTGATTATCACGAGCT TAAGATACACGCTTACCGTGCTGCGATCGAAAGTATTATCGTTCGTTTGCGTCCCGATTTAAAGCATGCTGGGCTGAAG GGTGGCATCAGGGCGACG G AGGTAAGCTTCGCCGAATACTGCCAACGAGCGGTCGATGGACTGGGGATCACTGTGCCGGAGAGCGATGTCCACTCGGCG GCA ACAC AATCTCGGCTCAGCCGATGGGAAGA GGTT GT AAAGTTTTACACG ATAAGACTGA TGTTTGC TCCACTGATAG AAAC GATCGTCCTGTACGATCGTTGGTTGTTTCTAC ]
[+] EMBL BX626634 [ ATGCACTCCAATTCGGACTAATTGGACTTCATCCGTGCGGTGATCTAGCCCCCTCTTTGTTGCGCCTCTTTCTTGCCTGCCGGGAGTGTCGCTTCATTAAGCTCGTTTGCTGCTGCTACATGAAGCTTTCCTGCGAGAGCTCGATATCGAACGGCGAGTTAAAGGAGTACGGATTCCCTTTAAGCGACTTTTGTCGTCGTACCAATCTCACCCTGAGCTACGAAGCGCGTGAAATGGCCTGCCATGCGATTGAACAGTACCGGG AAAGGCTGAGTGGTGATTATCACGAGCT TAAGATACACGCTTACCGTGCTGCGATCGAAAGTATTATCGTTCGTTTGCGTCCCGATTTAAAGCATGCTGGGCTGAAG GGTGGCATCAGGGCGACG G AGGTAAGCTTCGCCGAATACTGCCAACGAGCGGTCGATGGACTGGGGATCACTGTGCCGGAGAGCGATGTCCACTCGGCG GCA ACAC AATCTCGGCTCAGCCGATGGGAAGA GGTT GT AAAGTTTTACACG ATAAGACTGA TGTTTGC TCCACTGATAG AAAC GATCGTCCTGTACGATCGTTGGTTGTTTCTACTGGAACAAGGCACCAACGCGCGTATCGATGTTCTGTTCGATCCGTACCTTTCACCACGGAACCATGTCATCACCGCCTA]
consensusID : consensus_6827#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence
[CCAGAATCGCCCGACGGNNGTAAACATTCCACGTTTGCAGGCNGAATTGCAGCAGAAATATCAGTGAATCTAGGAAAATTGTGGATCTCTACAGGCCTATTATCGATGCGTACATTGTGGATTTCTTCCACCTGAATCACTGGAACAGTTTACCTTCGAGCTGGATTCGCTGTTTCAGTACCATCCCGATCGAGCATCTTCCAGCTCTCCTGTCCTTTGAGAGCAGAAAAACAGAAACAACTGTGTTGCCTTTGACGGTGCTTACCCTGCGATCGCTTTTCCGCCGATTAGTACACACTAGGAGCAAACCTAAGACCACCGAAAAGCACCCAAACGACCAAAACTGTGTTTATTACAAAACAATCTAATTTGGTTTCACTAAGTCGGTCAAAACTGACAAAGCGTCACGAAATACGACGCAGTTTGCCACTAACTGTTCGCGTGAAAACAATTGCCGACGCTGGTCGATATTGGCTCGGNGGAACAAGGGGGGAAACTTCTAAGNCAAGCCAACGCCTTTGCCCCTNACCGGGGAATTACAGGNGCATNCACCGAGCCNGTAGGTGCTCGTCCCTCCNGAAACACAGACACTGCACGTCACACAACGATGTCAAACACCCGCCAAAGAACACCCAAAAGGAG]
[+] EMBL AL696979 [CCAGAATCGCCCGACGGNNGTAAACATTCCACGTTTGCAGGCNGAATTGCAGCAGAAATATCAGTGAATCTAGGAAAATTGTGGATCTCTACAGGCCTATTATCGATGCGTACATTGTGGATTTCTTCCACCTGAATCACTGGAACAGTTTACCTTCGAGCTGGATTCGCTGTTTCAGTACCATCCCGATCGAGCATCTTCCAGCTCTCCTGTCCTTTGAGAGCAGAAAAACAGAAACAACTGTGTTGCCTTTGACGGTGCTTACCCTGCGATCGCTTTTCCGCCGATTAGTACACACTAGGAGCAAACCTAAGACCACCGAAAAGCACCCAAACGACCAAAACTGTGTTTATTACAAAACAATCTAATTTGGTTTCACTAAGTCGGTCAAAACTGACAAAGCGTCACGAAATACGACGCAGTTTGCCACTAACTGTTCGCGTGAAAACAATTGCCGACGCTGGTCGATATTGGCTCGGNGGAACAAGGGGGGAAACTTCTAAGNCAAGCCAACGCCTTTGCCCCTNACCGGGGAATTACAGGNGCATNCACCGAGCCNGTAGGTGCTCGTCCCTCCNGAAACACAGACACTGCACGTCACACAACGATGTCAAACACCCGCCAAAGAACACCCAAAAGGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6827#0 -------------------------ATTCCACGTTTGCAGGCAGAATTGCAGCAGAAA-A 34
consensus_6827#1 CCAGAATCGCCCGACGGNNGTAAACATTCCACGTTTGCAGGCNGAATTGCAGCAGAAATA 60
***************** *************** *
consensus_6827#0 TCAGTGAATCTAGGAAAATTGTGGATCTCTACAGGCCTATTATCGATGCGTACATTGTGG 94
consensus_6827#1 TCAGTGAATCTAGGAAAATTGTGGATCTCTACAGGCCTATTATCGATGCGTACATTGTGG 120
************************************************************
consensus_6827#0 ATTTCTTCCACCTGAATCACTGGAACAGNTTACCTTCGAGCTGGATTCGCTGTTTCAGTA 154
consensus_6827#1 ATTTCTTCCACCTGAATCACTGGAACAGTTTACCTTCGAGCTGGATTCGCTGTTTCAGTA 180
**************************** *******************************
consensus_6827#0 CCATCCCGATCGAGCATCTTCCAGCTCTCCTGTCCTTTGAGAGCAGAAAAACAGAAACAA 214
consensus_6827#1 CCATCCCGATCGAGCATCTTCCAGCTCTCCTGTCCTTTGAGAGCAGAAAAACAGAAACAA 240
************************************************************
consensus_6827#0 CTGTGTTGCCTTTGACGGTGCTTACCCTGCGATCGCTTTTCCGCCGATTAGTACACACTA 274
consensus_6827#1 CTGTGTTGCCTTTGACGGTGCTTACCCTGCGATCGCTTTTCCGCCGATTAGTACACACTA 300
************************************************************
consensus_6827#0 GGAGCAAACCTAAGACCACCGAAAAGCACCCAACCGACCCAAACTGTGTTTATTACAAA- 333
consensus_6827#1 GGAGCAAACCTAAGACCACCGAAAAGCACCCAAACGACCAAAACTGTGTTTATTACAAAA 360
********************************* ***** *******************
consensus_6827#0 CAATCTAATTTG-TTTCA-TAAGTCGGTCAAA-CTGAAAAAGCGTCACGAAATAGA--GC 388
consensus_6827#1 CAATCTAATTTGGTTTCACTAAGTCGGTCAAAACTGACAAAGCGTCACGAAATACGACGC 420
************ ***** ************* **** **************** **
consensus_6827#0 AGTTTGCCACTAACTGTTCGCGTGAAAACAATTGCCGCACGCTGGTCGATATTGGCTCGG 448
consensus_6827#1 AGTTTGCCACTAACTGTTCGCGTGAAAACAATTGCCG-ACGCTGGTCGATATTGGCTCG- 478
************************************* *********************
consensus_6827#0 GACAGGGGAATCTAGCACGCACGCTTGCCTACGGATTTGGTTTCCGCGTGTGCTGTCTCG 508
consensus_6827#1 -----GNGGAACAAGGGGGGAAACTT--CTAAG--NCAAGCCAACGCCT---TTGCCCCT 526
* * * * ** * * *** *** * * *** * ** * *
consensus_6827#0 AACAGAATGAGTCGTTCGTTCAAGCCGCAAGACAAAAGG-ACGCAGAACTCTGGCGTCGG 567
consensus_6827#1 NACCGGG-GAATTACAGGNGCATNCACCGAGCCNGTAGGTGCTCGTCCCTCCNGAAACAC 585
** * ** * * ** * * ** * *** * * *** * *
consensus_6827#0 TTAT-TAAAACACGAGCCAAAGCTGCAAAACACTACCACCACCACAGCACACCCGGTCCA 626
consensus_6827#1 AGACACTGCACGTCACACAACGATGTCAAACAC-----CCGCCAAAGAACACCCAAAAGG 640
* ** * *** * ** ****** ** *** ** ******
consensus_6827#0 TCTGCACGAAAAGGNCAACCTTGATCACATTGACCCGAATGCTTTCGAGCAACTGCTACG 686
consensus_6827#1 AG---------------------------------------------------------- 642
consensus_6827#0 GGATGCACTAAACATCGAAAAAGGTCAACATCCCGATGCACTCCAATTCGGACTAATTGG 746
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 ACTTCATCCGTGCGGTGATCTAGCCCCCTCTTTGTTGCGCCTCTTTCTTGCCTGCCGGGA 806
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 GTGTCGCTTCATTAAGCTCGTTTGCTGCTGCTACATGAAGCTTTCCTGCGAGAGCTCGAT 866
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 ATCGAACGGCGAGTTAAAGGAGTACGGATTCCCTTTAAGCGACTTTTGTCGTCGTACCAA 926
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 TCTCACCCTGAGCTACGAAGCGCGTGAAATGGCCTGCCATGCGATTGAACAGTACCGGGA 986
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 AAGGCTGAGTGGTGATTATCACGAGCTTAAGATACACGCTTACCGTGCTGCGATCGAAAG 1046
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 TATTATCGTTCGTTTGCGTCCCGATTTAAAGCATGCTGGGCTGAAGGGTGGCATCAGGGC 1106
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 GACGGAGGTAAGCTTCGCCGAATACTGCCAACGAGCGGTCGATGGACTGGGGATCACTGT 1166
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 GCCGGAGAGCGATGTCCACTCGGCGGCAACACAATCTCGGCTCAGCCGATGGGAAGAGGT 1226
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 TGTAAAGTTTTACACGATAAGACTGATGTTTGCTCCACTGATAGAAACGATCGTCCTGTA 1286
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 CGATCGTTGGTTGTTTCTACTGGAACAAGGCACCAACGCGCGTATCGATGTTCTGTTCGA 1346
consensus_6827#1 ------------------------------------------------------------
consensus_6827#0 TCCGTACCTTTCACCACGGAACCATGTCATCACCGCCTA 1385
consensus_6827#1 ---------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||