These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6837#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 907 fasta sequence [GAGCCGCGTGTTTGTGGTTGCCACTTTAAATTCCGTCGCAGATTATTTTCGCGTGCCAAAAAGCGAAAGAAAAGTGTACTTTCCTCGCAATTGGCATCCATTCCGTGCGGTGCGCCACTGTAGCTGCTGTTAGAAGGCACAGTTGTTTAGATACACATAGAGACACAGCGCCATCGCCGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAATACGTCGTAGAAGAAAGTCAGCAGCATGAAGTACATACTCGTCACCGGTGGTGTGATCAGCGGCGTTGGCAAA-GGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATACCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACGCAGGAACGTTCTCCCCATACGAACACGGTGAGGTGTTTGTTCTTGATGATGGCGGTGAGGTGGATTTGGATCTGGGAAACTATGAGCGTTTTCTGGATATTGTGCTGCACAAGGACAACAACATTACTACGGGCAAAATGTATAAAATGGTGATCGATAAGGAGCGCATCGGGGATTATCTTGGCAAAACCGTTCAAGTGGTTCCGCACATAACGGACGCCATCCAGGAATGGGTGGAGCGGGTAGCGAA-CAGCCCGGTAAAGGACAACATCGTGCCGGAGGTCTGCATCGTCGAGCTGGGCGGCACGATCGGTGACATCGAGGGCATGCCGTTCGTAGAAGCCTTCCGCCAGTTTCAGTTTCGCGTGAAGAAGGAAAACTTTTGCGTGGCGCACGTATCGCTCGTCCCGTTGCCCCGGGCTACCGGTGAACCGAAAACCAAACCCACCCAGGCAAGCGTCCGTGAGCTGCGCGGGTTTGGATTGAGCCCGGACATGATCGTGTGCC] [+] EMBL CNS08LDZ [GAGCCGCGTGTTTGTGGTTGCCACTTTAAATTCCGTCGCAGATTATTTTCGCGTGCCAAAAAGCGAAAGAAAAGTGTACTTTCCTCGCAATTGGCATCCATTCCGTGCGGTGCGCCACTGTAGCTGCTGTTAGAAGGCACAGTTGTTTAGATACACATAGAGACACAGCGCCATCGCCGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAATACGTCGTAGAAGAAAGTCAGTAGCATGAAGTACATACTCGTCACCGGTGGTGTGA CAGCGGCGTTGGCAAA GGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATACCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACGCAGGAACGTTCTCCCCATACGAACACGGTGAGGTGTTTGTTCTTGATGATGGCGGTGAGGTGGATTTGGATCTGGGAAACTATGAGCGTTTTCTGGATATTGTGCTGCACAAGGACAACAACATTACTACGGGCAAAATGTATAAAATGGTGATCGATAAGGAGCGCATCGGGGATTATCTTGGCAAAACCGTTCAAGTGGTTCCGCACATAACGGACGCCATCCAGGAATGGGTGGAGCGGGTAGCGAA CAGCCCGGTAAAGGACAACATCGTGCCGGAGGTCTGCATCGTCGAG ] [+] EMBL CNS08RSL [ cGATTATTTTCGCGTGCCAAAAAGCGAAAGAAAAGTGTACTTTCCTCGCAATTGGCATCCATTCCGTGCGGTGCGCCACTGTAGCTGCTGTTAGAAGGCACAGTTGTTTAGATACACATAGAGACACAGCGCCATCGCCGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAATACGTCGTAGAAGAAAGTCAGCAGCATGAAGTACATACTCGTCACCGGTGGTGTGATCAGCGGCGTTGGCAAAGGGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATACCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACGCAGGAACGTTCTCCCCATACGAACACGGTGAGGTGTTTGTTCTTGATGATGGCGGTGAGGTGGATTTGGATCTGGGAAACTATGAGCGTTTTCTGGATATTGTGCTGCACAAGGACAACAACATTACTACGGGCAAAATGTATAAAATGGTGATCGATAAGGAGCGCATCGGGGATTATCTTGGCAAAACCGTTCAAGTGGTTCCGCACATAACGGACGCCATCCAGGAATGGGTGGAGCGGGTAGCGAA CAGTCCGGTAAAGGACAACATCGTGCCGGAGGTCTGCATCGTCGAGCTGGGCGGCACGATCGGTGACATCGAGGGCATGCCGTTCGTAGAAGCCTTCCGCCAGTTTCAGTTTCGCGTGAAGAAGGAAAACTTTTGCGTGGCGCACGTATCGCTCGTCCCGTTGCCCCGGGCTACCGGTGAACCGAAAACCAAACCCACCCAGGCAAGCGTCCGTGAGCTGCGCGGGTTTGGATTGAGCCCGGACATGATCGTGTGCC] [+] EMBL BM614123 [ ccgGATTATTTTCGCGTGCCAAAAAGCGAACGAAAAGTGTACTTTCCTCGCAATTGGCATCCATTCCGTGCGGTGCGCCACTGTAGCTGCTGTTAGAAGGCACAGTTGTTTAGATACACATAGAGACACAGCGCCATCGCCGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAATACGTCGTAGAAGAAAGGCAGCAGCATGAAGTACATACTCGTCACCGGTGGTGTGATCAGCGGCGTTGGCAAA GGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATACCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACGCAGGAACGTTCTCCCCATACGAACACGGTGAGGTGTTTGTTCTTGATGATGGCGGTGAGGTGGATTTGGATCTGGGAAACTATGAGCGTTTTCTGGACATTGTGCTACATAAGGACAACAACATTACTACGGGCAAAATGTATAAAATGGTGATCGATAAGGAGCGCATCGGGGATTATCTTGGCAAAACCGTTCAAGTGGTTCCGCACATAACGGACGCCATCCAGGAATGGGTGGAGCGGGTAGCGAAGCAG CCGGTAAAGGACAACATCGTGCCGGAGGTGTGCATCGTCGAGCTGGGCGGCACGATCGGTGACATCG ] consensusID : consensus_6837#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence [CCGCGGACGCGTGGGTTGCCACTTTAAATTCCGTCGCAGATTATTTTCGCGTGCCAAAAAGCGAACGAAAAGTGTACTTTCCTCGCAATTGGCATCCATTCCGTGCGGTGCGCCACTGTAGCTGCTGTTAGAAGGCACAGTTGTTTAGATACACATAGAGACACAGCGCCATCGCCGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAATACGTCGTAGAAGAAAGGCAGCAGCATGAAGTACATACTCGTCACCGGTGGTGTGATCAGCGGCGTTGGCAAAGGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATACCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACGCAGGAACGTTCTCCCCATACGAACACGGTGAGTTGTTTGTTCTTGATGATGGCGGTGAGGTGGATTTGGATCTGGGAAACTATGAGCGTTTTCTGGACATTGTGCTACATAAGGACAACAACATTACTACGGGCAAAATGTATAAAATGGTGATCGATAAGGAGCGCATCGGGGATTATCTTGGCAAAACCGTTCAAGTGGTTCCGCACATAACGGACGCCATCCAGGAATGGGTGGAGCGGGTAGCGAAGCAGCCGGTAAAGGACAACATCG] [+] EMBL BM637563 [CCGCGGACGCGTGGGTTGCCACTTTAAATTCCGTCGCAGATTATTTTCGCGTGCCAAAAAGCGAACGAAAAGTGTACTTTCCTCGCAATTGGCATCCATTCCGTGCGGTGCGCCACTGTAGCTGCTGTTAGAAGGCACAGTTGTTTAGATACACATAGAGACACAGCGCCATCGCCGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAATACGTCGTAGAAGAAAGGCAGCAGCATGAAGTACATACTCGTCACCGGTGGTGTGATCAGCGGCGTTGGCAAAGGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATACCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACGCAGGAACGTTCTCCCCATACGAACACGGTGAGTTGTTTGTTCTTGATGATGGCGGTGAGGTGGATTTGGATCTGGGAAACTATGAGCGTTTTCTGGACATTGTGCTACATAAGGACAACAACATTACTACGGGCAAAATGTATAAAATGGTGATCGATAAGGAGCGCATCGGGGATTATCTTGGCAAAACCGTTCAAGTGGTTCCGCACATAACGGACGCCATCCAGGAATGGGTGGAGCGGGTAGCGAAGCAGCCGGTAAAGGACAACATCG] consensusID : consensus_6837#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [CCGAGGTTAGCTAGACGGTTGGTTCGTTCGTACGCACAAACCACGCTCTACCACCCTGTCAACCACTTTCCCAAATCGTTCGTACATTGACGTGCATATTCTTTTCTTCTTTTAGTTGTTTAGATACACATAGAGACACAGCGCCATCGCCGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAATACGTCGTAGAAGAAAGTCAGCAGCATGAAGTACATACTCGTCACCGGTGGTGTGATCAGCGGCGTTGGCAAAGGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATACCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACGGCAGGAACGTTCTCCCCATACGAACACGGTAACGCAAACGGCTAGACGAAATAGTCCTCAACGAACGATAGACNCCGGAGACACGAGAACNGAGAACACAAAAGCAAGCAAGCTCACGGGCATTGATATTTCGTTGGGCAAGAAGCGGTCGTGTAGAAAAGGGATACCTTTACATAATCNNAAAACCACGAAGNGCGAACTTGACCGATGACCGGTAACATTCACTGTCAGGGAAACGCACANACAGCTAACCANACGTA] [+] EMBL AL694949 [CCGAGGTTAGCTAGACGGTTGGTTCGTTCGTACGCACAAACCACGCTCTACCACCCTGTCAACCACTTTCCCAAATCGTTCGTACATTGACGTGCATATTCTTTTCTTCTTTTAGTTGTTTAGATACACATAGAGACACAGCGCCATCGCCGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAATACGTCGTAGAAGAAAGTCAGCAGCATGAAGTACATACTCGTCACCGGTGGTGTGATCAGCGGCGTTGGCAAAGGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATACCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACGGCAGGAACGTTCTCCCCATACGAACACGGTAACGCAAACGGCTAGACGAAATAGTCCTCAACGAACGATAGACNCCGGAGACACGAGAACNGAGAACACAAAAGCAAGCAAGCTCACGGGCATTGATATTTCGTTGGGCAAGAAGCGGTCGTGTAGAAAAGGGATACCTTTACATAATCNNAAAACCACGAAGNGCGAACTTGACCGATGACCGGTAACATTCACTGTCAGGGAAACGCACANACAGCTAACCANACGTA] consensusID : consensus_6837#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence [CCGACGGGCTAGACGGTTGGTTCGTTCGTACGCACAAACCACGCTCTACCACCCTATCAACCACTTTCCCAAATCGTTCGTACATTGACGTGCATATTCTTTTCTTCTTTTAGTTGTTTAGATACACATAGAGACACAGCGCCATCGCCGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAATACGTCGTAGAAGAAAGGCAGCAGCATGAAGTACATACTCGTCACCGGTGGTGTGATCAGCGGCGTTGGCAAAGGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATACCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACGCAGGAACGTTCTCCCCATACGAACACGGTGAGGTGTTTGTTCTTGATGATGGCGGTGAGGTGGATTTGGATCTGGGAAACTATGAGCGTTTTCTGGACATTGTGCTACATAAGGACAACAACATTACTACGGGCAAAATGTATAAAATGGTGATCGATAAGGAGCGCATCGGGGATTATCTTGGCAAAACCGTTCAAGTGGT] [+] EMBL BM636612 [CCGACGGGCTAGACGGTTGGTTCGTTCGTACGCACAAACCACGCTCTACCACCCTATCAACCACTTTCCCAAATCGTTCGTACATTGACGTGCATATTCTTTTCTTCTTTTAGTTGTTTAGATACACATAGAGACACAGCGCCATCGCCGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAATACGTCGTAGAAGAAAGGCAGCAGCATGAAGTACATACTCGTCACCGGTGGTGTGATCAGCGGCGTTGGCAAAGGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATACCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACGCAGGAACGTTCTCCCCATACGAACACGGTGAGGTGTTTGTTCTTGATGATGGCGGTGAGGTGGATTTGGATCTGGGAAACTATGAGCGTTTTCTGGACATTGTGCTACATAAGGACAACAACATTACTACGGGCAAAATGTATAAAATGGTGATCGATAAGGAGCGCATCGGGGATTATCTTGGCAAAACCGTTCAAGTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6837#0 GAGCCGCGTGTTTGTGG-TTGCCACTTTAAATTCCGTCGCAGATTATTTTCGCGTGCCAA 59 consensus_6837#1 ---CCGCGGACGCGTGGGTTGCCACTTTAAATTCCGTCGCAGATTATTTTCGCGTGCCAA 57 consensus_6837#3 ------------------------------CCGACGGGCTAGACGGTTGGTTCGTTCGTA 30 consensus_6837#2 --------------------------CCGAGGTTAGC--TAGACGGTTGGTTCGTTCGTA 32 * *** ** *** * * consensus_6837#0 AAAGCGAAAGAAAAGTGTACTTTCCTCGCAATTGGCATCC-ATTCCGTGCGGTGCGCCAC 118 consensus_6837#1 AAAGCGAACGAAAAGTGTACTTTCCTCGCAATTGGCATCC-ATTCCGTGCGGTGCGCCAC 116 consensus_6837#3 CGCACAAACCACGC-TCTACCACCCTATCAACCACTTTCCCAAATCGTTCG-TACATTGA 88 consensus_6837#2 CGCACAAACCACGC-TCTACCACCCTGTCAACCACTTTCCCAAATCGTTCG-TACATTGA 90 * ** * * *** *** *** *** * *** ** * * consensus_6837#0 TGTAGCTGCTGTTAGAAGGCAC-AGTTGTTTAGATACACATAGAGACACAGCGCCATCGC 177 consensus_6837#1 TGTAGCTGCTGTTAGAAGGCAC-AGTTGTTTAGATACACATAGAGACACAGCGCCATCGC 175 consensus_6837#3 CGTGCATATTCTTTTCTTCTTTTAGTTGTTTAGATACACATAGAGACACAGCGCCATCGC 148 consensus_6837#2 CGTGCATATTCTTTTCTTCTTTTAGTTGTTTAGATACACATAGAGACACAGCGCCATCGC 150 ** * * ** ************************************* consensus_6837#0 CGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAAT 237 consensus_6837#1 CGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAAT 235 consensus_6837#3 CGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAAT 208 consensus_6837#2 CGTCCTAGCCTGCTGTGTGTACACTGAGACACGCTAATTGATTGACCGAACCGAACGAAT 210 ************************************************************ consensus_6837#0 ACGTCGTAGAAGAAAGTCAGCAGCATGAAGTACATACTCGTCACCGGTGGTGTGATCAGC 297 consensus_6837#1 ACGTCGTAGAAGAAAGGCAGCAGCATGAAGTACATACTCGTCACCGGTGGTGTGATCAGC 295 consensus_6837#3 ACGTCGTAGAAGAAAGGCAGCAGCATGAAGTACATACTCGTCACCGGTGGTGTGATCAGC 268 consensus_6837#2 ACGTCGTAGAAGAAAGTCAGCAGCATGAAGTACATACTCGTCACCGGTGGTGTGATCAGC 270 **************** ******************************************* consensus_6837#0 GGCGTTGGCAAAGGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATA 357 consensus_6837#1 GGCGTTGGCAAAGGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATA 355 consensus_6837#3 GGCGTTGGCAAAGGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATA 328 consensus_6837#2 GGCGTTGGCAAAGGAGTTATCGCCAGCTCGTTCGGCACGCTGCTCAACGCATGCGGCATA 330 ************************************************************ consensus_6837#0 CCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACG-CAGGAACGTTCTCCCC 416 consensus_6837#1 CCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACG-CAGGAACGTTCTCCCC 414 consensus_6837#3 CCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACG-CAGGAACGTTCTCCCC 387 consensus_6837#2 CCCATAACGTCGATCAAGATCGATCCTTACATCAACATCGACGGCAGGAACGTTCTCCCC 390 ******************************************* **************** consensus_6837#0 ATACGAACACGGTGAGGTGTTTGTTCTTGATGA--TGGCGGTGAGGTGGATTTGGATCTG 474 consensus_6837#1 ATACGAACACGGTGAGTTGTTTGTTCTTGATGA--TGGCGGTGAGGTGGATTTGGATCTG 472 consensus_6837#3 ATACGAACACGGTGAGGTGTTTGTTCTTGATGA--TGGCGGTGAGGTGGATTTGGATCTG 445 consensus_6837#2 ATACGAACACGGTAACGCAAACGG-CTAGACGAAATAGTCCTCAACGAACGATAGACNCC 449 ************* * * ** ** ** * * * * * ** consensus_6837#0 GGAAACTATGAGCGTTTTCTGGATATTGTGCTGCACAAGGACAACAACATTACTACGGGC 534 consensus_6837#1 GGAAACTATGAGCGTTTTCTGGACATTGTGCTACATAAGGACAACAACATTACTACGGGC 532 consensus_6837#3 GGAAACTATGAGCGTTTTCTGGACATTGTGCTACATAAGGACAACAACATTACTACGGGC 505 consensus_6837#2 GGAGAC-ACGAGAACNGA--GAACACAAAAGCAAGCAAGCTCACGGGCATTGATATTT-C 505 *** ** * *** * * * *** ** **** ** * consensus_6837#0 AAAATGTATAAAATGGTGATCGATAAGGAGCGCATCGGGGATTATCTTGGCAAAACCGTT 594 consensus_6837#1 AAAATGTATAAAATGGTGATCGATAAGGAGCGCATCGGGGATTATCTTGGCAAAACCGTT 592 consensus_6837#3 AAAATGTATAAAATGGTGATCGATAAGGAGCGCATCGGGGATTATCTTGGCAAAACCGTT 565 consensus_6837#2 GTTGGGCAAGAAGCGGTCGTGTAGAAAAGGGATACCTTTA--CATAATCNNAAAACCACG 563 * * ** *** * * ** * * * ** * ****** consensus_6837#0 CAAGTGGTTCCGCACATAACGGACGCCATCCAGGAATGGGTGGAGCGGGTAGCGAACAGC 654 consensus_6837#1 CAAGTGGTTCCGCACATAACGGACGCCATCCAGGAATGGGTGGAGCGGGTAGCGAAGCAG 652 consensus_6837#3 CAAGTGGT---------------------------------------------------- 573 consensus_6837#2 -AAGNG----CGAACTTGACCGATGACCGGTAACATTCACTGTCA-GGGAAACGCACANA 617 *** * consensus_6837#0 CCGGTAAAGGACAACATCGTGCCGGAGGTCTGCATCGTCGAGCTGGGCGGCACGATCGGT 714 consensus_6837#1 CCGGTAAAGGACAACATCG----------------------------------------- 671 consensus_6837#3 ------------------------------------------------------------ consensus_6837#2 CAGCTAACCANACGTA-------------------------------------------- 633 consensus_6837#0 GACATCGAGGGCATGCCGTTCGTAGAAGCCTTCCGCCAGTTTCAGTTTCGCGTGAAGAAG 774 consensus_6837#1 ------------------------------------------------------------ consensus_6837#3 ------------------------------------------------------------ consensus_6837#2 ------------------------------------------------------------ consensus_6837#0 GAAAACTTTTGCGTGGCGCACGTATCGCTCGTCCCGTTGCCCCGGGCTACCGGTGAACCG 834 consensus_6837#1 ------------------------------------------------------------ consensus_6837#3 ------------------------------------------------------------ consensus_6837#2 ------------------------------------------------------------ consensus_6837#0 AAAACCAAACCCACCCAGGCAAGCGTCCGTGAGCTGCGCGGGTTTGGATTGAGCCCGGAC 894 consensus_6837#1 ------------------------------------------------------------ consensus_6837#3 ------------------------------------------------------------ consensus_6837#2 ------------------------------------------------------------ consensus_6837#0 ATGATCGTGTGCC 907 consensus_6837#1 ------------- consensus_6837#3 ------------- consensus_6837#2 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||