cluster # 6848

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Anopheles gambiae
cluster # 6848 cluster # 6848 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6848#0 length = 1187 sequences # 4

consensus_6848#1 length = 587 sequences # 1
consensus_6848#2 length = 111 sequences # 1

consensusID : consensus_6848#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1187
fasta sequence

                              [CCGGTTTTGTAAACACTGTTCTACTCCAACTATCAAACCGCTCCCACGGTATCGTCTTCAAATGACGCCGGATGCAGCGACCTCTTTCTTCAATAGACCTTGAATGAAACGTAATCTAATAGCGAGTGTGTTATGCGGATTGCATGAATGTTGGCGTTTGTAGAACGAGCATTAAGGAAATGGAAGGAAAAGGCATTAGGCAGTGATTATATGGCTTCAGCTGTGCGGCTTACATCGGGAAGGCTCTAGCAAAAAGCAGCGTTCAGTGTATGACATAATGCAGGGCAGGCAAAACACATCCTTCGGTGGTGTGAAAATGTCACAACATCAGAAAAAGGAGGAACACACAAAAAAAAACGAAATACAAAATCAGGTGATAAAAACAACATCCATCAAGTGCAGATGAAGGACAGTGCAAAAACATAATGTCTTGCTCTGCTCGGTTTTGCGGTAACACAGCAAGCGTGTCACATTGCGAGTGTAAGCACACAGACGCACACACACACACACACACCAGTAACAAACAATAACATCGTAATGGAAGGATGTTAGTGCCAGTGATACAGATGAGGACAACAATGTAACGTGCAGACCAATCTTGAATGGCGTGAAATAGAACGGTAAAAAAACGCAGTATTTGTCATGCAGAAGAAAGAACCCCAAACCAAACACAAACAAAACACTACAAAGTGTATGTGTGAAATATTAGACGCAACCACAAAAAAAAAACTCACAATGCACAAACAAAGTGAAACCAGCATACAGGAGCATACATTACAGGAATATACAGACAAGCTTCGGCAACAAAC-AAAAAAAAAAGCAAGCAAGCAACAAACAGCTACTAAAAGAAGATGAAGAAAGGAGGGAGAAAAATATAATAATTCACATAATACGCACACCCAAGAAGCCCACATGGATTGAGTATGTTTTGCTTTTGAGCAGAAGACACACGGCGTAAGATTGGCGGGGACGCTAAGAGAATGATTAATTGAAACTTTCACATACACAGACACACACATACAGCCATAAAAAGCATAAAAGCAACAGC-AAAAAAAAAGACGAAACAGGACATGTATACACTAGCAGTGCCAGTAATCAAAAAGATTTTCGAAAAGCAGATAAAAACAAACAGAAAAAAACAGAGCAAACGGCAACGCAAAGGCATGGCAAAGGCATGAAGAAGTTAA]

[+] EMBL BM602335             [CCGGTTTTGTAAACACTGTTCTACTCCAACTATCAAACCGCTCCCACGGTATCGTCTTCAAATGACGCCGGATGCAGCGACCTCTTTCTTCAATAGACCTTGAATGAAACGTAATCTAATAGCGAGTGTGTTATGCGGATTGCATGAATGTTGGCGTTTGTAGAACGAGCATTAAGGAAATGGAAGGAAAAGGCATTAGGCAGTGATTATATGGCTTCAGCTGTGCGGCTTACATCGGGAAGGCTCTAGCAAAAAGCAGCGTTCAGTGTATGACATAATGCAGGGCAGGCAAAACACATCCTTCGGTGGTGTGAAAATGTCACAACATCAGAAAAAGGAGGAACACACAAAAAAAAACGAAATACAAAATCAGGTGATAAAAACAACATCCATCAAGTGCAGATGAAGGACAGTGCAAAAACATAATGTCTTGCTCTGCTCGGTTTTGCGGTAACACAGCAAGCGTGTCACATTGCGAGTGTAAGCACACAGACGCACACACACACACACACACCAGTAACAAACAATAACATCGTAATGGAAGGATGTTAGTGCCAGTGATACAGATGAGGACAACAATGTAACGTGCAGACCAATCTTGAATGGCGTGAAATAGAACGGTAAAAAAACGCAGTATTTGTCATGCAGAAGAAAGAAACCCCAACCAAACAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BX613058             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AAAAAAACGCAGTATTTGTCATGCAGAAGAAAGAACCCCAAACCAAACACAAACAAAACACTACAAAGTGTATGTGTGAAATATTAGACGCAACCACAAAAAAAAAACTCACAATGCACAAACAAAGTGAAACCAGCATACAGGAGCATACATTACAGGAATATACAGACAAGCTTCGGCAACAAAC AAAAAAAAAAGCAAGCAAGCAACAAACAGCTACTAAAAGAAGATGAAGAAAGGAGGGAGAAAAATATAATAATTCACATAATACGCACACCCAAGAAGCCCACATGGATTGAGTATGTTTTGCTTTTGAGCAGAAGACACACGGCGTAAGATTGGCGGGGACGCTAAGAGAATGATTAATTGAAACTTTCACATACACAGACACACACATACAGCCATAAAAAGCATAAAAGCAACAGC AAAAAAAAAGACGAAACAGGACATGTATACACTAGCAGTGCCAGTAATCAAAAAGATTTTCGAAAAGCAGATAAAAACAAACAGAAAAAAACAGAGCAAACGGCAACGCAAAGGCATGGCAAAGGCATGAAGAAGTTAA]
[+] EMBL BX610863             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTTGTCATGCAGAAGAAAGAACCCCAAACCAAACACAAACAAAACACTACAAAGTGTATGTGTGAAATAGTAGACGCAACCACAAAAAAAAAACTCACAATGCACAAACAAAGTGAAACCAGCATACAGGAGCATACATTACAGGAATATACAGACAAGCTTCGGCAACAAACAAAAAAAAAAAGCAAGCAAGCAACAAACAGCTACTAAAAGAAGATGAAGAAAGGAGGGAGAAAAATATAATAATTCACATAATACGCACACCCAAGAAGCCCACATGGATTGAGTATGGTTTGCTTTTGAGCAGAAGACACACGGCGTAAGATTGGCGGGGACGCTAAGAGAATGATTAATTGAAACTTTCACATACACAGACACACACATACAGCCATAAAAAGCATAAAAGCAACAGCAAAAAAAAAAGACGAAACAGGACATGTATACACTAGCAGTGCCAGTAATCAAAAAGATTTTCGAAAAGCAGATAAAAACAAACAGAAAAAAACAGAGCAAATGGCAACGCAAAGGCATGGCAAAGGCATGAAGA      ]
[+] EMBL BX610864             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CACAAAAAAAAAACTCACAAGGCACAAACAAAGTGAAACCAGCATACAGGAGCATACATCACAGGAATATACAGACAAGCTCCGGCAACAAACAAAAAAAAAAAGCAAGCAAGCAACAAACAGCTACTAAAAGAAGAAGAAGA                                                                                                                                                                                                                                                                                                                                          ]




>consensus_6848#0
CCGGTTTTGTAAACACTGTTCTACTCCAACTATCAAACCGCTCCCACGGTATCGTCTTCA
AATGACGCCGGATGCAGCGACCTCTTTCTTCAATAGACCTTGAATGAAACGTAATCTAAT
AGCGAGTGTGTTATGCGGATTGCATGAATGTTGGCGTTTGTAGAACGAGCATTAAGGAAA
TGGAAGGAAAAGGCATTAGGCAGTGATTATATGGCTTCAGCTGTGCGGCTTACATCGGGA
AGGCTCTAGCAAAAAGCAGCGTTCAGTGTATGACATAATGCAGGGCAGGCAAAACACATC
CTTCGGTGGTGTGAAAATGTCACAACATCAGAAAAAGGAGGAACACACAAAAAAAAACGA
AATACAAAATCAGGTGATAAAAACAACATCCATCAAGTGCAGATGAAGGACAGTGCAAAA
ACATAATGTCTTGCTCTGCTCGGTTTTGCGGTAACACAGCAAGCGTGTCACATTGCGAGT
GTAAGCACACAGACGCACACACACACACACACACCAGTAACAAACAATAACATCGTAATG
GAAGGATGTTAGTGCCAGTGATACAGATGAGGACAACAATGTAACGTGCAGACCAATCTT
GAATGGCGTGAAATAGAACGGTAAAAAAACGCAGTATTTGTCATGCAGAAGAAAGAACCC
CAAACCAAACACAAACAAAACACTACAAAGTGTATGTGTGAAATATTAGACGCAACCACA
AAAAAAAAACTCACAATGCACAAACAAAGTGAAACCAGCATACAGGAGCATACATTACAG
GAATATACAGACAAGCTTCGGCAACAAACAAAAAAAAAAGCAAGCAAGCAACAAACAGCT
ACTAAAAGAAGATGAAGAAAGGAGGGAGAAAAATATAATAATTCACATAATACGCACACC
CAAGAAGCCCACATGGATTGAGTATGTTTTGCTTTTGAGCAGAAGACACACGGCGTAAGA
TTGGCGGGGACGCTAAGAGAATGATTAATTGAAACTTTCACATACACAGACACACACATA
CAGCCATAAAAAGCATAAAAGCAACAGCAAAAAAAAAGACGAAACAGGACATGTATACAC
TAGCAGTGCCAGTAATCAAAAAGATTTTCGAAAAGCAGATAAAAACAAACAGAAAAAAAC
AGAGCAAACGGCAACGCAAAGGCATGGCAAAGGCATGAAGAAGTTAA

consensusID : consensus_6848#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 587
fasta sequence

                              [CAGAAGAAAGAAACCCAAACCAAACACAAACAAAACACTACAAAGTGTATGTGTGAAATAGTAGACGCAACCAAAAAAAAAAAAAAAAAAACTCACAATGCACAAACAAAGTGAAACCAGCATACAGGAGCATACATTACAGGAATATACAGACAAGCTTCGGCAACAAACAAAAAAAAAAGCAAGCAAGCAACAAACATCTACTAAAAGAAGATGAAGAAAGGAGGGAGGAAAATATAATAATTCACATAATACGCACACCGAAGAAGCCCACATGGATTGAGTATGGTTTGCTTTTGAGCAGAACACACAAGATTGGCGGGGACGCTAAGAGAATGATTAATTGAAACTTTCACATACACAGATACACACATACAGCCATAAAAAGCATAAAAGCTACAGCAAAAAAAGGCAAAACAGAACATGTATACACTAGCAGTGCCAGTAATCAAAAAGATTTTCGAAAAGCAGATAATAAACAGAAAAAAAACAGAGCAAACGGCAACGCAAAGGCATGAAGAAGTTAATGTATTACGCAGAAAAAAAGAGACAAGAAAAGGCAAAGCAAGTCACATGATGCATGATGG]

[+] EMBL BX615523             [CAGAAGAAAGAAACCCAAACCAAACACAAACAAAACACTACAAAGTGTATGTGTGAAATAGTAGACGCAACCAAAAAAAAAAAAAAAAAAACTCACAATGCACAAACAAAGTGAAACCAGCATACAGGAGCATACATTACAGGAATATACAGACAAGCTTCGGCAACAAACAAAAAAAAAAGCAAGCAAGCAACAAACATCTACTAAAAGAAGATGAAGAAAGGAGGGAGGAAAATATAATAATTCACATAATACGCACACCGAAGAAGCCCACATGGATTGAGTATGGTTTGCTTTTGAGCAGAACACACAAGATTGGCGGGGACGCTAAGAGAATGATTAATTGAAACTTTCACATACACAGATACACACATACAGCCATAAAAAGCATAAAAGCTACAGCAAAAAAAGGCAAAACAGAACATGTATACACTAGCAGTGCCAGTAATCAAAAAGATTTTCGAAAAGCAGATAATAAACAGAAAAAAAACAGAGCAAACGGCAACGCAAAGGCATGAAGAAGTTAATGTATTACGCAGAAAAAAAGAGACAAGAAAAGGCAAAGCAAGTCACATGATGCATGATGG]




>consensus_6848#1
CAGAAGAAAGAAACCCAAACCAAACACAAACAAAACACTACAAAGTGTATGTGTGAAATA
GTAGACGCAACCAAAAAAAAAAAAAAAAAAACTCACAATGCACAAACAAAGTGAAACCAG
CATACAGGAGCATACATTACAGGAATATACAGACAAGCTTCGGCAACAAACAAAAAAAAA
AGCAAGCAAGCAACAAACATCTACTAAAAGAAGATGAAGAAAGGAGGGAGGAAAATATAA
TAATTCACATAATACGCACACCGAAGAAGCCCACATGGATTGAGTATGGTTTGCTTTTGA
GCAGAACACACAAGATTGGCGGGGACGCTAAGAGAATGATTAATTGAAACTTTCACATAC
ACAGATACACACATACAGCCATAAAAAGCATAAAAGCTACAGCAAAAAAAGGCAAAACAG
AACATGTATACACTAGCAGTGCCAGTAATCAAAAAGATTTTCGAAAAGCAGATAATAAAC
AGAAAAAAAACAGAGCAAACGGCAACGCAAAGGCATGAAGAAGTTAATGTATTACGCAGA
AAAAAAGAGACAAGAAAAGGCAAAGCAAGTCACATGATGCATGATGG

consensusID : consensus_6848#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 111
fasta sequence

                              [GGGAAACCAGCAGACAGGAGCAGACATCACAGGAAGATACAGACAAGCGGCGGCAACAAACAAAAAAAAAAAGCAAGCAAGCAACAAACAGCGACTAAAAGAAGAAGAAGA]

[+] EMBL BX610862             [GGGAAACCAGCAGACAGGAGCAGACATCACAGGAAGATACAGACAAGCGGCGGCAACAAACAAAAAAAAAAAGCAAGCAAGCAACAAACAGCGACTAAAAGAAGAAGAAGA]




>consensus_6848#2
GGGAAACCAGCAGACAGGAGCAGACATCACAGGAAGATACAGACAAGCGGCGGCAACAAA
CAAAAAAAAAAAGCAAGCAAGCAACAAACAGCGACTAAAAGAAGAAGAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6848#0      CCGGTTTTGTAAACACTGTTCTACTCCAACTATCAAACCGCTCCCACGGTATCGTCTTCA 60
consensus_6848#2      ------------------------------------------------------------
consensus_6848#1      ------------------------------------------------------------
                                                                                  

consensus_6848#0      AATGACGCCGGATGCAGCGACCTCTTTCTTCAATAGACCTTGAATGAAACGTAATCTAAT 120
consensus_6848#2      ------------------------------------------------------------
consensus_6848#1      ------------------------------------------------------------
                                                                                  

consensus_6848#0      AGCGAGTGTGTTATGCGGATTGCATGAATGTTGGCGTTTGTAGAACGAGCATTAAGGAAA 180
consensus_6848#2      ------------------------------------------------------------
consensus_6848#1      ------------------------------------------------------------
                                                                                  

consensus_6848#0      TGGAAGGAAAAGGCATTAGGCAGTGATTATATGGCTTCAGCTGTGCGGCTTACATCGGGA 240
consensus_6848#2      ------------------------------------------------------------
consensus_6848#1      ------------------------------------------------------------
                                                                                  

consensus_6848#0      AGGCTCTAGCAAAAAGCAGCGTTCAGTGTATGACATAATGCAGGGCAGGCAAAACACATC 300
consensus_6848#2      ------------------------------------------------------------
consensus_6848#1      ------------------------------------------------------------
                                                                                  

consensus_6848#0      CTTCGGTGGTGTGAAAATGTCACAACATCAGAAAAAGGAGGAACACACAAAAAAAAACGA 360
consensus_6848#2      ------------------------------------------------------------
consensus_6848#1      ------------------------------------------------------------
                                                                                  

consensus_6848#0      AATACAAAATCAGGTGATAAAAACAACATCCATCAAGTGCAGATGAAGGACAGTGCAAAA 420
consensus_6848#2      ------------------------------------------------------------
consensus_6848#1      ------------------------------------------------------------
                                                                                  

consensus_6848#0      ACATAATGTCTTGCTCTGCTCGGTTTTGCGGTAACACAGCAAGCGTGTCACATTGCGAGT 480
consensus_6848#2      ------------------------------------------------------------
consensus_6848#1      ------------------------------------------------------------
                                                                                  

consensus_6848#0      GTAAGCACACAGACGCACACACACACACACACACCAGTAACAAACAATAACATCGTAATG 540
consensus_6848#2      ------------------------------------------------------------
consensus_6848#1      ------------------------------------------------------------
                                                                                  

consensus_6848#0      GAAGGATGTTAGTGCCAGTGATACAGATGAGGACAACAATGTAACGTGCAGACCAATCTT 600
consensus_6848#2      ------------------------------------------------------------
consensus_6848#1      ------------------------------------------------------------
                                                                                  

consensus_6848#0      GAATGGCGTGAAATAGAACGGTAAAAAAACGCAGTATTTGTCATGCAGAAGAAAGAACCC 660
consensus_6848#2      ------------------------------------------------------------
consensus_6848#1      ---------------------------------------------CAGAAGAAAGAAACC 15
                                                                                  

consensus_6848#0      CAAACCAAACACAAACAAAACACTACAAAGTGTATGTGTGAAATATTAGACGCAACCACA 720
consensus_6848#2      ------------------------------------------------------------
consensus_6848#1      CAAACCAAACACAAACAAAACACTACAAAGTGTATGTGTGAAATAGTAGACGCAACCAAA 75
                                                                                  

consensus_6848#0      AAAAAAAAA-------CTCACAATGCACAAACAAAGTGAAACCAGCATACAGGAGCATAC 773
consensus_6848#2      -----------------------------------GGGAAACCAGCAGACAGGAGCAGAC 25
consensus_6848#1      AAAAAAAAAAAAAAAACTCACAATGCACAAACAAAGTGAAACCAGCATACAGGAGCATAC 135
                                                         * ********** ********* **

consensus_6848#0      ATTACAGGAATATACAGACAAGCTTCGGCAACAAACAAAAAAAAAA-GCAAGCAAGCAAC 832
consensus_6848#2      ATCACAGGAAGATACAGACAAGCGGCGGCAACAAACAAAAAAAAAAAGCAAGCAAGCAAC 85
consensus_6848#1      ATTACAGGAATATACAGACAAGCTTCGGCAACAAACAAAAAAAAAA-GCAAGCAAGCAAC 194
                      ** ******* ************  ********************* *************

consensus_6848#0      AAACAGCTACTAAAAGAAGATGAAGAAAGGAGGGAGAAAAATATAATAATTCACATAATA 892
consensus_6848#2      AAACAGCGACTAAAAGAAGAAGAAGA---------------------------------- 111
consensus_6848#1      AAACATCTACTAAAAGAAGATGAAGAAAGGAGGGAGGAAAATATAATAATTCACATAATA 254
                      ***** * ************ *****                                  

consensus_6848#0      CGCACACCCAAGAAGCCCACATGGATTGAGTATGTTTTGCTTTTGAGCAGAAGACACACG 952
consensus_6848#2      ------------------------------------------------------------
consensus_6848#1      CGCACACCGAAGAAGCCCACATGGATTGAGTATGGTTTGCTTTTGAGCAGAACACACA-- 312
                                                                                  

consensus_6848#0      GCGTAAGATTGGCGGGGACGCTAAGAGAATGATTAATTGAAACTTTCACATACACAGACA 1012
consensus_6848#2      ------------------------------------------------------------
consensus_6848#1      -----AGATTGGCGGGGACGCTAAGAGAATGATTAATTGAAACTTTCACATACACAGATA 367
                                                                                  

consensus_6848#0      CACACATACAGCCATAAAAAGCATAAAAGCAACAGCAAAAAAAAAGACGAAACAGGACAT 1072
consensus_6848#2      ------------------------------------------------------------
consensus_6848#1      CACACATACAGCCATAAAAAGCATAAAAGCTACAGCAAAAAA--AGGCAAAACAGAACAT 425
                                                                                  

consensus_6848#0      GTATACACTAGCAGTGCCAGTAATCAAAAAGATTTTCGAAAAGCAGATAAAAACAAACAG 1132
consensus_6848#2      ------------------------------------------------------------
consensus_6848#1      GTATACACTAGCAGTGCCAGTAATCAAAAAGATTTTCGAAAAGCAGATAATAA--ACAGA 483
                                                                                  

consensus_6848#0      AAAAAAACAGAGCAAACGGCAACGCAAAGGCATGGCAAAG-----GCATGAAGAAGTTAA 1187
consensus_6848#2      ------------------------------------------------------------
consensus_6848#1      AAAAAAACAGAGCAAACGGCAACGCAAAGGCATGAAGAAGTTAATGTATTACGCAGAAAA 543
                                                                                  

consensus_6848#0      --------------------------------------------
consensus_6848#2      --------------------------------------------
consensus_6848#1      AAAGAGACAAGAAAAGGCAAAGCAAGTCACATGATGCATGATGG 587