cluster # 686

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Anopheles gambiae
cluster # 686 cluster # 686 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_686#0 length = 465 sequences # 1

consensus_686#1 length = 369 sequences # 1

consensusID : consensus_686#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence

                              [ACGTCGCAAGTATTCGACCGATGAACCGCTGGCGGTGAGCACACCGCCCTCCAAATGGCCCGGCGTGACAAACCTGCGAGCGCTGTTGGCACGAGAGAAGGACGAAGATACACCGCGGCTGAACGTGCTGCTATGCGAGTCGTTTGTGGCCGCTTATATGGCGCTGTTCGTGTACGCTCTGACCACGTGCGATTGTCACATCCTGTACCGTCTAGCCGGGCAGAACTTCTGCGACAGCTCCTGGTCGACACTGTTCGGCGGTGGCGTAAAGAAGCTGTTGCGCAAGGCTACCTCGCACGCGCAAACGGCCCAGACCGTTCAGGCGCAGATGCAGCAGGAAAGCATGGAGGGTTCTGCCGAGGCTGGAGCTAGTAGTGCGGAAGGTAGCGTCTGGGGTGCGGTAACATCGCTTACGAAACATCGGGTGAAGCTAAACATGAAACTGCTGGGACCGTTCGCTGGACC]

[+] EMBL AGA280689            [ACGTCGCAAGTATTCGACCGATGAACCGCTGGCGGTGAGCACACCGCCCTCCAAATGGCCCGGCGTGACAAACCTGCGAGCGCTGTTGGCACGAGAGAAGGACGAAGATACACCGCGGCTGAACGTGCTGCTATGCGAGTCGTTTGTGGCCGCTTATATGGCGCTGTTCGTGTACGCTCTGACCACGTGCGATTGTCACATCCTGTACCGTCTAGCCGGGCAGAACTTCTGCGACAGCTCCTGGTCGACACTGTTCGGCGGTGGCGTAAAGAAGCTGTTGCGCAAGGCTACCTCGCACGCGCAAACGGCCCAGACCGTTCAGGCGCAGATGCAGCAGGAAAGCATGGAGGGTTCTGCCGAGGCTGGAGCTAGTAGTGCGGAAGGTAGCGTCTGGGGTGCGGTAACATCGCTTACGAAACATCGGGTGAAGCTAAACATGAAACTGCTGGGACCGTTCGCTGGACC]




>consensus_686#0
ACGTCGCAAGTATTCGACCGATGAACCGCTGGCGGTGAGCACACCGCCCTCCAAATGGCC
CGGCGTGACAAACCTGCGAGCGCTGTTGGCACGAGAGAAGGACGAAGATACACCGCGGCT
GAACGTGCTGCTATGCGAGTCGTTTGTGGCCGCTTATATGGCGCTGTTCGTGTACGCTCT
GACCACGTGCGATTGTCACATCCTGTACCGTCTAGCCGGGCAGAACTTCTGCGACAGCTC
CTGGTCGACACTGTTCGGCGGTGGCGTAAAGAAGCTGTTGCGCAAGGCTACCTCGCACGC
GCAAACGGCCCAGACCGTTCAGGCGCAGATGCAGCAGGAAAGCATGGAGGGTTCTGCCGA
GGCTGGAGCTAGTAGTGCGGAAGGTAGCGTCTGGGGTGCGGTAACATCGCTTACGAAACA
TCGGGTGAAGCTAAACATGAAACTGCTGGGACCGTTCGCTGGACC

consensusID : consensus_686#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 369
fasta sequence

                              [CCGCCCACGCGTCCGGCCGAGGCTGGAGCTAGTAGTGCGGAAGGTAGCGTCTGGGGTGCGGTAACATCGCTTACGAAACATCGGGTGAAGCTAAACATGAAACTGCTGGGACCGTTCGCTGGACCCCAGGGTGCATCGAACATGAAGGAGGACAAACCCACGTACCGGGAGCAGTTCGTGCCGCCGGAAATGTCTATGGTGTCGTACTTCCTTACGAAACCTATTCCCAAGGGACTGGGGGCGGACGAAGAGGAGTATGATTCGGCCGACTCGGCCGTATCGGATCTCGACGACGAAGACGAGGATGAGGATGTGTTCAACGATCCGCTAAACAACGACCCCAAAGCATCGCAAGTGTCGGCCGCCGTC]

[+] EMBL BM593892             [CCGCCCACGCGTCCGGCCGAGGCTGGAGCTAGTAGTGCGGAAGGTAGCGTCTGGGGTGCGGTAACATCGCTTACGAAACATCGGGTGAAGCTAAACATGAAACTGCTGGGACCGTTCGCTGGACCCCAGGGTGCATCGAACATGAAGGAGGACAAACCCACGTACCGGGAGCAGTTCGTGCCGCCGGAAATGTCTATGGTGTCGTACTTCCTTACGAAACCTATTCCCAAGGGACTGGGGGCGGACGAAGAGGAGTATGATTCGGCCGACTCGGCCGTATCGGATCTCGACGACGAAGACGAGGATGAGGATGTGTTCAACGATCCGCTAAACAACGACCCCAAAGCATCGCAAGTGTCGGCCGCCGTC]




>consensus_686#1
CCGCCCACGCGTCCGGCCGAGGCTGGAGCTAGTAGTGCGGAAGGTAGCGTCTGGGGTGCG
GTAACATCGCTTACGAAACATCGGGTGAAGCTAAACATGAAACTGCTGGGACCGTTCGCT
GGACCCCAGGGTGCATCGAACATGAAGGAGGACAAACCCACGTACCGGGAGCAGTTCGTG
CCGCCGGAAATGTCTATGGTGTCGTACTTCCTTACGAAACCTATTCCCAAGGGACTGGGG
GCGGACGAAGAGGAGTATGATTCGGCCGACTCGGCCGTATCGGATCTCGACGACGAAGAC
GAGGATGAGGATGTGTTCAACGATCCGCTAAACAACGACCCCAAAGCATCGCAAGTGTCG
GCCGCCGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_686#0      ACGTCGCAAGTATTCGACCGATGA-ACCGCTGGCGGTGAGCACACCGCCCTCCAAATGGC 59
consensus_686#1      -CCGCCCACGCGTCCGGCCGAGGCTGGAGCTAGTAGTGCGGAAGGTAGCGTCTGG----- 54
                      *  * ** *  * ** **** *     *** *  *** * *      * **        

consensus_686#0      CCGGCGTGACAAACCTGCGAGCGCTGTTGGCACGAGAGAAGGACGAAGATACACCGCGGC 119
consensus_686#1      --GGTGCGGTAAC------ATCGCTTACGAAACATCGGGTGAAGCTAAACATGAAACTGC 106
                       ** * *  **       * ****   *  **    *  * *   * * *     * **

consensus_686#0      TGAACGTGCTGCTATGCGAGTCGTTTGTGGCCGCTTATATGGCGCTGTTCGTGTACGCTC 179
consensus_686#1      TGGG---ACCGTTCGCTGGACCCCAGGGTGCATCGAACATGAAGGAGGACA--AACCCAC 161
                     **      * * *    *   *    *  **  *  * ***  *  *  *    ** * *

consensus_686#0      TGACCACGTGCGATTGTCACATCCTGTACCGTCTAGCCGGGCAGAACTTCTGCGACAGCT 239
consensus_686#1      GTACCGGGAGCAGTTCGTGCCGCCGGAAATGTCTA-TGGTGTCGTACTTCCTT-ACGAAA 219
                       ***  * **  **    *  ** * *  *****   * *  * *****    **    

consensus_686#0      CCTGGTCGACACTGTTCGGCGGTGGCGTAAAGAAGCTGTTGCGCAAGGCTACCTCGCACG 299
consensus_686#1      CCTATTCCCAAGGGACTGGGGGCGGACGAAGAGGAGTATGATTC--GGCCGACTCGGCCG 277
                     ***  **   *  *   ** ** **   **      * *    *  ***   ****  **

consensus_686#0      CGCAAACGGCCCAGACCGTTCAGGCGCAGATGCAGCAGGAAAGCATGGAGGGTTCTGCCG 359
consensus_686#1      TATCG--GATCTCGACGACGAAGACGAGGATG-----AGGATGTGTTCAACGATCCGCTA 330
                            *  *  ***     ** **  ****      * * *  *  *  * ** **  

consensus_686#0      AGGCTGGAGCTAGTAGTGCGGAAGGTAGCGTCTGGGGTGCGGTAACATCGCTTACGAAAC 419
consensus_686#1      AACAACGACCCCAAAGCATCGCAAGTGTCGGCCGCCGTC--------------------- 369
                     *     ** *    **    * * **  ** * *  **                      

consensus_686#0      ATCGGGTGAAGCTAAACATGAAACTGCTGGGACCGTTCGCTGGACC 465
consensus_686#1      ----------------------------------------------