cluster # 6860

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Anopheles gambiae
cluster # 6860 cluster # 6860 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6860#0 length = 720 sequences # 5

consensus_6860#1 length = 611 sequences # 1

consensusID : consensus_6860#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 720
fasta sequence

                              [TGCGGTTGCAGTGTGTGTTGTGGTTCCGTTTCGCAAGCAGCTAGAGGGAAGTGATATGATGTAATAAAGCAACAAAAATCGTGCGTTTCTGGTCCAATTTGTTTGCGTCTGCTGGCCGTAACCATGTCGCTGACATTGTTGCGTACGCTGTGCCGCCACCAGCAGCACGTGCTACAGCAGCGGCAGCCCGTTTCGTTCGTCGGCAGCGGCGCGTTTCGTGGTGCAATCCGCCTGCAGAGCA---CCGCCGGTGGAGACGGTCCGAAACAAGACGGTGACAACGACAAGCAATCCACCAAAGAGCGGCTGGCGGCCAAGTACAGCCGGGAGAATGTGAAGCGCAACGTGCAGGGGTACGTGTTTTCACGGTTTTTCGACTACGTGAAAAACTACGACAAGGTGATCGAGAAGAAGTTCCCGTCGGCGGTACACGTCTACCGGGTGTTTCTGGTCGGCGTGCGCGATTTCTTCAACGACATGAAGAAGCTAGTCAAGATCACGAAAATCGTCTACTCGCACGATAACGATCTGCGCTGCCTGACGCGCAAGGAGATCGAGCTGTACTACCAGATGCCGCGGGACATGAGGAAGGTGGCGCCCGTGCTGCTCATATCGGCGCTGCCGTTCGCGAACTATGTGATATTTCCACTTGCTTACATGTACCCCCGCACGCTGCTGACGTCCCATTTCTGGTCGGCACAGCAGAAGCTAGACTTTTGTGCA]

[+] EMBL BX607290             [TGCGGTTGCAGTGTGTGTTGTGGTTCCGTTTCGCAAGCAGCTAGAGGGAAGTGATATGATGTAATAAAGCAACAAAAATCGTGCGTTTCTGGTCCAATTTGTTTGCGTCTGCTGGCCGTAACCATGTCGCTGACATTGTTGCGTACGCTGTGCCTCCACCAGCAGCACGTGCTACAGCAGCGGCAGCCCGTTTCGTTCGTCGGCAGCGGCGCGTTTCGTGGTGCAATCCGCCTGCAGAGCA   CCGCCGGTGGAGACGGTCCGAAACAAGACGGTGACAACGACAAGCAATCCACCAAAGAGCGGCTGGCGGCCAAGTACAGCCGGGAGAATGTGAAGCGCAACGTGCAGGGGTACGTGTTTTCACGGTTTTTCGACTACGTGAAAAACTACGACAAGGTGATCGAGAAGAAGTTCCCGTCGGCGGTACACGTCTACCGGGTGTTTCTGGTCGGCGTGCGCGATTTCTTCAACGACATGAAGAAGCTAGTCAAGATCACGAAAATCGTCTACTCGCACGATAACGATCTGCGCTGCCTGACGCGCAAGGAGATCGAGCTGTACTACCAGATGCCGCGGGACATGAGGAAGGTGGCGCCCGTGCTGCTCATATCGGCGCTGCCGTTCGCGAACTATGTGATATTTCCACTTGCTTACATGTACCCCCGTACGCTGCTGACGTCCCATTTCT                                ]
[+] EMBL BM645827             [    ccgGCAGTGTGTGTTGTGGTTCCGTTTCGCAAGCAGCTAGAGGGAAGTGATATGATGTAATAAAGCAACAAAAATCGTGCGTTTCTGGTCCAATTTGTTTGCGTCTGCTGGCCGTAACCATGTCGCTGACATTGTTGCGTACGCTGTGCCGCCACCAGCAGCACGTGCTACAGCAGCGGCAGCCCGTTTCGTTCGTCGGCAGCGGCGCGTTTCGTGGTGCAATCCGCCTGCAGAGCA   CCGCCGGTGGAGACGGTCCGAAACAAGACGGTGACAACGACAAGCAATCCACCAAAGAGCGGCTGGCGGCCAAGTACAGCCGGGAGAATGTGAAGCGCAACGTGCAGGGGTACGTGTTTTCACGGTTTTTCGACTACGTGAAAAACTACGACAAGGTGATCGAGAAGAAGTTCCCGTCGGCGGTACACGTCTACCGGGTGTTTCTGGTCGGCGTGCGCGATTTCTTCAACGACATGAAGAAGCTAGTCAAGATCACGAAAATCGTCTACTCGCACGATAACGATCTGCGCTGCCTGACGCGCAAGGAGATCGAGCTGTACTACCAGATGCCGCGGGACATGAGGAAGGTGGCGCCCGT                                                                                                                         ]
[+] EMBL BM622889             [             ccgGTTGTGGTGCCGTTTCGCAAGCAGCTAGAGGGAAGTGATATGATGTAATAAAGCAACAAAAATCGTGCGTTTCTGGTGTAATTTGTTTGCGTCTGCTGGCCGTAACCATGTCGCTGACATTGTTGCGTACGCTGTGCCGCCACCAGCAGCACGTGCTACAGCAGCGTCAGCCCGTTTCGTTCGTCGGCAGCGGCGCGTTTCGTGGTGCAATCCGCCTGCAGAGCACCGCCGCCGGTGGAGACGGTCCGAAACAGGACGGCGACAACGACAAGCAATCGACCAAAGAGCGGCTGGCGGCCAAGTACAGCCGGGAGAATGTGAAGCGCAACGTGCAGGGGTACGTGTTTTCACGGTTTTTCGACTACGTGAAAAACTACGACAAGGTGATCGAGAAAAAGTTCCCGTCGGCGGTACACGTCTACCGGGTGTTTCTGGTCGGCGTGCGCGATTTCTTCAACGACATGAAGAAGCTAGTCAAGATCACGAAAATCGTCTACTCGCACGATAACGATCTGCGCTGCCTGACGCGCAAGGAGATCGAGCTGTACTACCAGATGCCGCGGGACATGAGGAAGGTGGCGCCCGTGCTGCTCATATCGGCGCTGCCGTTCGCGAACTATGTGATATTTCCACTTGCTTACATGTACCCCCGCACGCTGCTG                                             ]
[+] EMBL BM610077             [                   ccGGTGCCGTTTCGCAAGCAGCTAGAGGGAAGTGATATGATGTAATAAAGCAACAAAAATCGTGCGTTTCTGGTGTAATTTGTTTGCGTCTGCTGGCCGTAACCATGTCGCTGACATTGTTGCGTACGCTGTGCCGCCACCAGCAGCACGTGCTACAGCAGCGTCAGCCCGTTTCGTTCGTCGGCAGCGGCGCGTTTCGTGGTGCAATCCGCCTGCAGAGCACCGCCGCCGGTGGAGACGGTCCGAAACAGGACGGCGACAACGACAAGCAATCGACCAAAGAGCGGCTGGCGGCCAAGTACAGCCGGGAGAATGTGAAGCGCAACGTGCAGGGGTACGTGTTTTCACGGTTTTTCGACTACGTGAAAAACTACGACAAGGTGATCGAGAAAAAGTTCCCGTCGGCGGTACACGTCTACCGGGTGTTTCTGGTCGGCGTGCGCGATTTCTTCAACGACATGAAGAAGCTAGTCAAGATCACGAAAATCGTCTACTCGCACGATAACGATCTGCGCTGCCTGACGCGCAAGGAGATCGAGCTGTACTACCAGATGCCGCGGGACATGAGGAAGGTGGCGCCCGTGCTGCTCATATCGGCGCTGCCGTTCGCGAACTATGTGATATTTCCACTTGCTTACATGTACCCCCGCACGCTGCTGACGTCCCATTTCTGGTCGGCACAGCAGAAGCTAGACTTTTGTGCA]
[+] EMBL BM614402             [                                               ccgGTGATATGATGTAATAAAGCAACAAAAATCGTGCGTTTCTGGTCCAATTTGTTTGCGTCTGCTGGCCGTAACCATGTCGCTGACATTGTTGCGTACGCTGTGCCGCCACCAGCAGCACGTGCTACAGCAGCGGCAGCCCGTTTCGTTCGTCGGCAGCGGCGCGTTTCGTGGTGCAATCCGCCTGCAGAGCA   CCGCCGGTGGAGACGGTCCGAAACAAGACGGTGACAACGACAAGCAATCCACCAAAGAGCGGCTGGCGGCCAAGTACAGCCGGGAGAATGTGAAGCGCAACGTGCAGGGGTACGTGTTTTCACGGTTTTTCGACTACGTGAAAAACTACGACAAGGTGATCGAGAAGAAGTTCCCGTCGGCGGTACACGTCTACCGGGTGTTTCTGGTCGGCGTGCGCGATTTCTTCAACGACATGAAGAAGCTAGTCAAGATCACGAAAATCGTCTACTCGCACGATAACGATCTGCGCTGCCTGACGCGCAAGGAGATCGAGCTGTACTACCAGATGCCGCGGGACATGAGGAAGGTGGCGCCCGTGCTGCTCATATCGGCGCTGCCGTTCGCGAACTATGTGATATTTCCACTTGCTTACATGTAC                                                            ]




>consensus_6860#0
TGCGGTTGCAGTGTGTGTTGTGGTTCCGTTTCGCAAGCAGCTAGAGGGAAGTGATATGAT
GTAATAAAGCAACAAAAATCGTGCGTTTCTGGTCCAATTTGTTTGCGTCTGCTGGCCGTA
ACCATGTCGCTGACATTGTTGCGTACGCTGTGCCGCCACCAGCAGCACGTGCTACAGCAG
CGGCAGCCCGTTTCGTTCGTCGGCAGCGGCGCGTTTCGTGGTGCAATCCGCCTGCAGAGC
ACCGCCGGTGGAGACGGTCCGAAACAAGACGGTGACAACGACAAGCAATCCACCAAAGAG
CGGCTGGCGGCCAAGTACAGCCGGGAGAATGTGAAGCGCAACGTGCAGGGGTACGTGTTT
TCACGGTTTTTCGACTACGTGAAAAACTACGACAAGGTGATCGAGAAGAAGTTCCCGTCG
GCGGTACACGTCTACCGGGTGTTTCTGGTCGGCGTGCGCGATTTCTTCAACGACATGAAG
AAGCTAGTCAAGATCACGAAAATCGTCTACTCGCACGATAACGATCTGCGCTGCCTGACG
CGCAAGGAGATCGAGCTGTACTACCAGATGCCGCGGGACATGAGGAAGGTGGCGCCCGTG
CTGCTCATATCGGCGCTGCCGTTCGCGAACTATGTGATATTTCCACTTGCTTACATGTAC
CCCCGCACGCTGCTGACGTCCCATTTCTGGTCGGCACAGCAGAAGCTAGACTTTTGTGCA

consensusID : consensus_6860#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 611
fasta sequence

                              [CCGCGGACGCGTGGGTTCGCAAGCAGCTAGAGGGAAGTGATATGATGTAATAAAGCAACAAAAATCGTGCGTTTCTGGTCCAATTTGTTTGCGTCTGCTGGCCGTAACCATGTCGCTGACATTGTTGCGTACGCTGTGCCGCCACCAGCAGCACGTGCTACAGCAGCGGCAGCCCGTTTCGTTCGTCGGCAGCGGCGCGTTTCGTGGTGCAATCCGCCTGCAGAGCACCGCCGGTGGAGACGGTCCGAAACAAGACGGTGACAACGACAAGCAATCCACCAAAGAGCGGCTGGCGGCCAAGTACAGCCGGGAGAATGTGAAGCGCAACGTGCAGGGGTACGTGTTTTCACGGTTTTTCGACTACGTGAAAAACTACGACAAGGTGATCGAGAAGAAGTTCCCGTCGGCGGTACACGTCTACCGGGTGTTTCTGGTCGGCGTGCGCGATTTCTTCAACGACATGAAGAAGCTAGTCAAGATCACGAAAATCGTCTACTCGCACGATAACGATCTGCGCTGCCTGACGCGCAAGGAGATCGAGCTGTACTACCAGATGCCGCGGGACATGAGGAAGGTGGCGCCCGTGCTGCTCATATCGGCGCTGCCGTTCG]

[+] EMBL BM601841             [CCGCGGACGCGTGGGTTCGCAAGCAGCTAGAGGGAAGTGATATGATGTAATAAAGCAACAAAAATCGTGCGTTTCTGGTCCAATTTGTTTGCGTCTGCTGGCCGTAACCATGTCGCTGACATTGTTGCGTACGCTGTGCCGCCACCAGCAGCACGTGCTACAGCAGCGGCAGCCCGTTTCGTTCGTCGGCAGCGGCGCGTTTCGTGGTGCAATCCGCCTGCAGAGCACCGCCGGTGGAGACGGTCCGAAACAAGACGGTGACAACGACAAGCAATCCACCAAAGAGCGGCTGGCGGCCAAGTACAGCCGGGAGAATGTGAAGCGCAACGTGCAGGGGTACGTGTTTTCACGGTTTTTCGACTACGTGAAAAACTACGACAAGGTGATCGAGAAGAAGTTCCCGTCGGCGGTACACGTCTACCGGGTGTTTCTGGTCGGCGTGCGCGATTTCTTCAACGACATGAAGAAGCTAGTCAAGATCACGAAAATCGTCTACTCGCACGATAACGATCTGCGCTGCCTGACGCGCAAGGAGATCGAGCTGTACTACCAGATGCCGCGGGACATGAGGAAGGTGGCGCCCGTGCTGCTCATATCGGCGCTGCCGTTCG]




>consensus_6860#1
CCGCGGACGCGTGGGTTCGCAAGCAGCTAGAGGGAAGTGATATGATGTAATAAAGCAACA
AAAATCGTGCGTTTCTGGTCCAATTTGTTTGCGTCTGCTGGCCGTAACCATGTCGCTGAC
ATTGTTGCGTACGCTGTGCCGCCACCAGCAGCACGTGCTACAGCAGCGGCAGCCCGTTTC
GTTCGTCGGCAGCGGCGCGTTTCGTGGTGCAATCCGCCTGCAGAGCACCGCCGGTGGAGA
CGGTCCGAAACAAGACGGTGACAACGACAAGCAATCCACCAAAGAGCGGCTGGCGGCCAA
GTACAGCCGGGAGAATGTGAAGCGCAACGTGCAGGGGTACGTGTTTTCACGGTTTTTCGA
CTACGTGAAAAACTACGACAAGGTGATCGAGAAGAAGTTCCCGTCGGCGGTACACGTCTA
CCGGGTGTTTCTGGTCGGCGTGCGCGATTTCTTCAACGACATGAAGAAGCTAGTCAAGAT
CACGAAAATCGTCTACTCGCACGATAACGATCTGCGCTGCCTGACGCGCAAGGAGATCGA
GCTGTACTACCAGATGCCGCGGGACATGAGGAAGGTGGCGCCCGTGCTGCTCATATCGGC
GCTGCCGTTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6860#0      TGCGGTTGCAGTGTGTGTTGTGGTTCCGTTTCGCAAGCAGCTAGAGGGAAGTGATATGAT 60
consensus_6860#1      --------------CCGCGGACGCGTGGGTTCGCAAGCAGCTAGAGGGAAGTGATATGAT 46
                                      *  *  *    * *******************************

consensus_6860#0      GTAATAAAGCAACAAAAATCGTGCGTTTCTGGTCCAATTTGTTTGCGTCTGCTGGCCGTA 120
consensus_6860#1      GTAATAAAGCAACAAAAATCGTGCGTTTCTGGTCCAATTTGTTTGCGTCTGCTGGCCGTA 106
                      ************************************************************

consensus_6860#0      ACCATGTCGCTGACATTGTTGCGTACGCTGTGCCGCCACCAGCAGCACGTGCTACAGCAG 180
consensus_6860#1      ACCATGTCGCTGACATTGTTGCGTACGCTGTGCCGCCACCAGCAGCACGTGCTACAGCAG 166
                      ************************************************************

consensus_6860#0      CGGCAGCCCGTTTCGTTCGTCGGCAGCGGCGCGTTTCGTGGTGCAATCCGCCTGCAGAGC 240
consensus_6860#1      CGGCAGCCCGTTTCGTTCGTCGGCAGCGGCGCGTTTCGTGGTGCAATCCGCCTGCAGAGC 226
                      ************************************************************

consensus_6860#0      ACCGCCGGTGGAGACGGTCCGAAACAAGACGGTGACAACGACAAGCAATCCACCAAAGAG 300
consensus_6860#1      ACCGCCGGTGGAGACGGTCCGAAACAAGACGGTGACAACGACAAGCAATCCACCAAAGAG 286
                      ************************************************************

consensus_6860#0      CGGCTGGCGGCCAAGTACAGCCGGGAGAATGTGAAGCGCAACGTGCAGGGGTACGTGTTT 360
consensus_6860#1      CGGCTGGCGGCCAAGTACAGCCGGGAGAATGTGAAGCGCAACGTGCAGGGGTACGTGTTT 346
                      ************************************************************

consensus_6860#0      TCACGGTTTTTCGACTACGTGAAAAACTACGACAAGGTGATCGAGAAGAAGTTCCCGTCG 420
consensus_6860#1      TCACGGTTTTTCGACTACGTGAAAAACTACGACAAGGTGATCGAGAAGAAGTTCCCGTCG 406
                      ************************************************************

consensus_6860#0      GCGGTACACGTCTACCGGGTGTTTCTGGTCGGCGTGCGCGATTTCTTCAACGACATGAAG 480
consensus_6860#1      GCGGTACACGTCTACCGGGTGTTTCTGGTCGGCGTGCGCGATTTCTTCAACGACATGAAG 466
                      ************************************************************

consensus_6860#0      AAGCTAGTCAAGATCACGAAAATCGTCTACTCGCACGATAACGATCTGCGCTGCCTGACG 540
consensus_6860#1      AAGCTAGTCAAGATCACGAAAATCGTCTACTCGCACGATAACGATCTGCGCTGCCTGACG 526
                      ************************************************************

consensus_6860#0      CGCAAGGAGATCGAGCTGTACTACCAGATGCCGCGGGACATGAGGAAGGTGGCGCCCGTG 600
consensus_6860#1      CGCAAGGAGATCGAGCTGTACTACCAGATGCCGCGGGACATGAGGAAGGTGGCGCCCGTG 586
                      ************************************************************

consensus_6860#0      CTGCTCATATCGGCGCTGCCGTTCGCGAACTATGTGATATTTCCACTTGCTTACATGTAC 660
consensus_6860#1      CTGCTCATATCGGCGCTGCCGTTCG----------------------------------- 611
                      *************************                                   

consensus_6860#0      CCCCGCACGCTGCTGACGTCCCATTTCTGGTCGGCACAGCAGAAGCTAGACTTTTGTGCA 720
consensus_6860#1      ------------------------------------------------------------