These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6886#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1254 fasta sequence [GCTTTTTTTTTTGGGTTTGCGGCTGTGCCATCTGTCGGAGCCAGCGTTTGGCAAGCTGCATCGATTCTTCCGTGCTGAGATTGCTCAAATTATCGGTCAGATGCTCCTGGATCCATTTCGGCAGCTTGCCCCGCTTGTCCTGCCGGGAGAAGCGCTTGTCCGCGAAGATCATAATACCGTAATCGGTCTTACCACGAATAGCACGACCAACGCACTGTGCCGCATGCCGCAGTGCATCGAAGGTAAGAAAATCGTTCTCCCGTATCTGGAACTGATCGCGCAAATAGTCCAACCGTGCCTTCAGTATGCGCGACTGGGTGTACACGTACGGAATGCCAAACATCAGCACCGCCCGACCGAGATGGTGATCGAAATCCACACCCTCCGACACTTTGCCACGGGCGACGGCCAACAGCACGGCACCGCGGCCGCACTCGCACGCCTTCACGTAGTTCATCAGCGCGTAGGACGTTTCCGCATTGTCCTGCGTTTCGATGAACAGTAGCTTGTAGCGCAGCA-GCGTATCGATGATGCCCTGATCGTACCAGGACGCGACGACCGACTCCAGGTACAGGTAGGAGGTGAAGAAGCACACCACCCCGTCCGGTACGGTTTTGGCCGTCTCCACCAGCAGCTGGCCGTAATTGCGCGTCACCGCCGTATCTTCGCGCGTTTCAAAGCGCGACGAGATGGCGACCTGATCATTACCACGCGCTACAATCATCGGCAGCAAGCAGGGCCGGGCGAGCGTCATCGTGAACGAGCTCATCACGACCGGCTCAAAGTCCAGTATCTTCGGGTACATGTCCATCGGGGACAGCGTGCCGGACGTGATGACCACGCTCTGGAACCGCTGGAAGATCGGTTTCATCGCGATCGACGAATCGAGACAGCTGAAGTGCATGATCGGA-TTCGACACGGTGGGCGTTTTGTCGTCGAACGGCTCGATGATGATGGTAAAGCCCTTCGTGTACGTCGA-CACGAGCGTCGCGAACGAGGTAATGACCGACAGCGGGCCGTACTCGCTCAGGTCCGTGATTTCCAGCGTGCGCAGCAGCGACTGCAACCGATCGGCACAGAAGCGCAGCGGTTTCCGCTCGATGCACACCTTCTGCTGTACGT-CGCGCAAAAACCCGGCCGGACTTTCCTGCACCACGTGCTGGACGCGCAGCCGCGATTTGATGTACTCGATGAAGCGCTTCAGAAAGGACAGGAAGTGATCCGCGTTGCGTATGTTGCCCGGCACGACCTCCC] [+] EMBL CNS09LQB [GCTTTTTTTTTTGGGTTTGCGGCTGTGCCATCTGTCGGAGCCAGCGTTTGGCAAGCTGCATCGATTCTTCCGTGCTGAGATTGCTCAAATTATCGGTCAGATGCTCCTGGATCCATTTCGGCAGCTTGCCCCGCTTGTCCTGCCGGGAGAAGCGCTTGTCCGCGAAGATCATAATACCGTAATCGGTCTTACCACGAATAGCACGACCAACGCACTGTGCCGCATGCCGCAGTGCATCGAAGGTAAGAAAATCGTTCTCCCGTATCTGGAACTGATCGCGCAAATAGTCCAACCGTGCCTTCAGTATGCGCGACTGGGTGTACACGTACGGAATGCCAAACATCAGCACCGCCCGACCGAGATGGTGATCGAAATCCACACCCTCCGACACTTTGCCACGGGCGACGGCCAACAGCACGGCACCGCGGCCGCACTCGCACGCCTTCACGTAGTTCATCAGCGCGTAGGACGTTTCCGCATTGTCCTGCGTTTCGATGAACAGTAGCTTGTAGCGCA CAGGCGTATCGATGATGCCCTGATCGTACCAGGACGCGACGACCGACTCCAGGTACAGGTAGGAGGTGAAGAAGCACACCACCCCGTCCGGTACGGTTTTGGCCGTCTCCACCAGCAGCTGGCCGTAATTGCGCGTCACCGCCGTATCTTCGCGCGTTTCAAAGCGCGACGAGATGGCGACCTGATCATTACCACGCGCTACAATCATCGGCAGCAAGCAGGGCCGGGCGAGCGTCATCGTGAACGAGCTCATCACGACCGGCTCAAAc ] [-] EMBL AGA284237 [ AGCCAGCGTTTGGCAAGCTGCATCGATTCTTCCGTGCTGAGATTGCTCAAATTATCGGTCAGATGCTCCTGGATCCATTTCGGCAGCTTGCCCCGCTTGTCCTGCCGGGAGAAGCGCTTGTCCGCGAAGATCATAATACCGTAATCGGTCTTACCACGAATAGCACGACCAACGCACTGTGCCGCATGCCGCAGTGCATCGAAGGTAAGAAAATCGTTCTCCCGTATCTGGAACTGATCGCGCAAATAGTCCAACCGTGCCTTCAGTATGCGCGACTGGGTGTACACGTACGGAATGCCAAACATCAGCACCGCCCGACCGAGATGGTGATCGAAATCCACACCCTCCGACACTTTGCCACGGGCGACGGCCAACAG ] [+] EMBL AGA284239 [ CCTTCACGTAGTTCATCAGCGCGTAGGACGTTTCCGCATTGTCCTGCGTTTCGATGAACAGTAGCTTGTAGCGCAGCA GCGTATCGATGATGCCCTGATCGTACCAGGACGCGACGACCGACTCCAGGTACAGGTAGGAGGTGAAGAAGCACACCACCCCGTCCGGTACGGTTTTGGCCGTCTCCACCAGCAGCTGGCCGTAATTGCGCGTCACCGCCGTATCTTCGCGCGTTTCAAAGCGCGACGAGATGGCGACCTGATCATTACCACGCGCTACAATCATCGGCAGCAAGCAGGGCCGGGCGAGCGTCATCGTGAACGAGCTCATCACGACCGGCTCAAAGTCCAGTATCTTCGGGTACATGTCCATCGGGGACAACGTGCCGGACGTGATGAC ] [-] EMBL BX627659 [ AGTAGCTTGTAGCGCAGCA GCGTATCGATGATGCCCTGATCGTACCAGGACGCGACGACCGACTCCAGGTACAGGTAGGAGGTGAAGAAGCACACCACCCCGTCCGGTACGGTTTTGGCCGTCTCCACAAGCAGCTGGCCGTAATTGCGCGTCACCGCCGTATCTTCGCGCGTTTCAAAGCGCGACGAGATGGCAACCTGATCATTGCCACGCGCTACAATCATCGGCAGCAAGCAGGGCCGGGCGAGCGTCATCGTGAACGAGCTCATCACGACCGGCTCAAAGTCCAGTATCTTCGGGTACATGTCCATCGGGGACAGCGTGCCGGACGTGATGACCACGCTCTGGAACCGCTGGAAGATCGGTTTCATCGCGATCGACGAATCGAGACAGCTGAAGTGCATGATCGGA TTCGACACGGTGGGCGTTTTGTCGTCGAACGGCTCGATGATGATGGTAAAGCCCTTCGTGTACGTCGA CACGAGCGTCGCGAACGAGGTAATGACCGACAGCGGGCCGTACTCGCTCAGGTCCGTGATTTCCAGCGTGCGCAGCAGCGACTGCAACCGATCGGCACAGAAGCGCAGCGGTTTCCGCTCGATGCACACCTTCTGCTGTACGT CGCGCAAAAACCCGGCCGGACTTTCCTGCACCACGTGCTGGACGCGCAGCCGCGATTTGATGTACTCGATGAAGCGCTTCAGAAAGGACAGGAAGTGATCCGCGTTGCGTATGTTGCCCGGCACGACCTCCC] [-] EMBL AL932922 [ ATCGTGAACGAGCTCATCACGACCGGCTCAAAGTCCAGTATCTTCGGGTACATGTCCATCGGGGACAGCGTGCCGGACGTGATGACCACGCTCTGGAACCGCTGGAAGATCGGTTTCATCGCGATCGACGAATCGAGACAGCTGAAGTGCATGATCGGATTTCGACACGGTGGGCGTTTTGTCGTCGAACGGCTCGATGATGATGGTAAAGCCCTTCGTGTACGTCGACCACGAGCGTCGCGAACGAGGTAATTACCGACAGCGGGCCGTACTCGCTCAGGTCCGTGATTTCCAGCGTGCGCAGCAGCGACTGCAACCGATCGGCACAGAAGCGCAGCGGTTTCCGCTCGATGCACACCTTCTGCTGTACGTACGCctgggcc ] consensusID : consensus_6886#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [TTTTTTATAATTGAACACCGTTGCTTTATTCTTGCGTACATCAACTCGAACTGTGCTGCTCTCGACCACTCACTGTTTGCCTTGGGCCTGTTTTTCCAGCTTTTCCCGCTCCATGCTTTGCAGTTGCTCGAGCGTAAGTAGCGAAACGCCCAGCTGATCTTCGCGGGTGAACGGCTGTGCCATCTGTCGGAGCCAGCGTTTGGCAAGCTGCATCGATTCTTCCGTGCTGAGATTGCTCAAATTATCGGTCAGATGCTCCTGGATCCATTTCGGCAGCTTGCCCCGCTTGTCCTGCCGGGAGAAGCGCTTGTCCGCCAAGATTATAATACCGTAATCGGTCTTACCACCAATAGCACGACCAACGCACTGTGCCGCATGCC] [+] EMBL AGA285537 [TTTTTTATAATTGAACACCGTTGCTTTATTCTTGCGTACATCAACTCGAACTGTGCTGCTCTCGACCACTCACTGTTTGCCTTGGGCCTGTTTTTCCAGCTTTTCCCGCTCCATGCTTTGCAGTTGCTCGAGCGTAAGTAGCGAAACGCCCAGCTGATCTTCGCGGGTGAACGGCTGTGCCATCTGTCGGAGCCAGCGTTTGGCAAGCTGCATCGATTCTTCCGTGCTGAGATTGCTCAAATTATCGGTCAGATGCTCCTGGATCCATTTCGGCAGCTTGCCCCGCTTGTCCTGCCGGGAGAAGCGCTTGTCCGCCAAGATTATAATACCGTAATCGGTCTTACCACCAATAGCACGACCAACGCACTGTGCCGCATGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6886#0 ------------------------------------------------------------ consensus_6886#1 TTTTTTATAATTGAACACCGTTGCTTTATTCTTGCGTACATCAACTCGAACTGTGCTGCT 60 consensus_6886#0 ------------------------------------------------------------ consensus_6886#1 CTCGACCACTCACTGTTTGCCTTGGGCCTGTTTTTCCAGCTTTTCCCGCTCCATGCTTTG 120 consensus_6886#0 --------------------------------GCTTTTTTTTTTGGGTTTGCGGCTGTGC 28 consensus_6886#1 CAGTTGCTCGAGCGTAAGTAGCGAAACGCCCAGCTGATCTTCGCGGGTGAACGGCTGTGC 180 *** * ** **** ********* consensus_6886#0 CATCTGTCGGAGCCAGCGTTTGGCAAGCTGCATCGATTCTTCCGTGCTGAGATTGCTCAA 88 consensus_6886#1 CATCTGTCGGAGCCAGCGTTTGGCAAGCTGCATCGATTCTTCCGTGCTGAGATTGCTCAA 240 ************************************************************ consensus_6886#0 ATTATCGGTCAGATGCTCCTGGATCCATTTCGGCAGCTTGCCCCGCTTGTCCTGCCGGGA 148 consensus_6886#1 ATTATCGGTCAGATGCTCCTGGATCCATTTCGGCAGCTTGCCCCGCTTGTCCTGCCGGGA 300 ************************************************************ consensus_6886#0 GAAGCGCTTGTCCGCGAAGATCATAATACCGTAATCGGTCTTACCACGAATAGCACGACC 208 consensus_6886#1 GAAGCGCTTGTCCGCCAAGATTATAATACCGTAATCGGTCTTACCACCAATAGCACGACC 360 *************** ***** ************************* ************ consensus_6886#0 AACGCACTGTGCCGCATGCCGCAGTGCATCGAAGGTAAGAAAATCGTTCTCCCGTATCTG 268 consensus_6886#1 AACGCACTGTGCCGCATGCC---------------------------------------- 380 ******************** consensus_6886#0 GAACTGATCGCGCAAATAGTCCAACCGTGCCTTCAGTATGCGCGACTGGGTGTACACGTA 328 consensus_6886#1 ------------------------------------------------------------ consensus_6886#0 CGGAATGCCAAACATCAGCACCGCCCGACCGAGATGGTGATCGAAATCCACACCCTCCGA 388 consensus_6886#1 ------------------------------------------------------------ consensus_6886#0 CACTTTGCCACGGGCGACGGCCAACAGCACGGCACCGCGGCCGCACTCGCACGCCTTCAC 448 consensus_6886#1 ------------------------------------------------------------ consensus_6886#0 GTAGTTCATCAGCGCGTAGGACGTTTCCGCATTGTCCTGCGTTTCGATGAACAGTAGCTT 508 consensus_6886#1 ------------------------------------------------------------ consensus_6886#0 GTAGCGCAGCAGCGTATCGATGATGCCCTGATCGTACCAGGACGCGACGACCGACTCCAG 568 consensus_6886#1 ------------------------------------------------------------ consensus_6886#0 GTACAGGTAGGAGGTGAAGAAGCACACCACCCCGTCCGGTACGGTTTTGGCCGTCTCCAC 628 consensus_6886#1 ------------------------------------------------------------ consensus_6886#0 CAGCAGCTGGCCGTAATTGCGCGTCACCGCCGTATCTTCGCGCGTTTCAAAGCGCGACGA 688 consensus_6886#1 ------------------------------------------------------------ consensus_6886#0 GATGGCGACCTGATCATTACCACGCGCTACAATCATCGGCAGCAAGCAGGGCCGGGCGAG 748 consensus_6886#1 ------------------------------------------------------------ consensus_6886#0 CGTCATCGTGAACGAGCTCATCACGACCGGCTCAAAGTCCAGTATCTTCGGGTACATGTC 808 consensus_6886#1 ------------------------------------------------------------ consensus_6886#0 CATCGGGGACAGCGTGCCGGACGTGATGACCACGCTCTGGAACCGCTGGAAGATCGGTTT 868 consensus_6886#1 ------------------------------------------------------------ consensus_6886#0 CATCGCGATCGACGAATCGAGACAGCTGAAGTGCATGATCGGATTCGACACGGTGGGCGT 928 consensus_6886#1 ------------------------------------------------------------ consensus_6886#0 TTTGTCGTCGAACGGCTCGATGATGATGGTAAAGCCCTTCGTGTACGTCGACACGAGCGT 988 consensus_6886#1 ------------------------------------------------------------ consensus_6886#0 CGCGAACGAGGTAATGACCGACAGCGGGCCGTACTCGCTCAGGTCCGTGATTTCCAGCGT 1048 consensus_6886#1 ------------------------------------------------------------ consensus_6886#0 GCGCAGCAGCGACTGCAACCGATCGGCACAGAAGCGCAGCGGTTTCCGCTCGATGCACAC 1108 consensus_6886#1 ------------------------------------------------------------ consensus_6886#0 CTTCTGCTGTACGTCGCGCAAAAACCCGGCCGGACTTTCCTGCACCACGTGCTGGACGCG 1168 consensus_6886#1 ------------------------------------------------------------ consensus_6886#0 CAGCCGCGATTTGATGTACTCGATGAAGCGCTTCAGAAAGGACAGGAAGTGATCCGCGTT 1228 consensus_6886#1 ------------------------------------------------------------ consensus_6886#0 GCGTATGTTGCCCGGCACGACCTCCC 1254 consensus_6886#1 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||