|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6888#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1041 fasta sequence
[GGGCAGTATTGAAGACTCGTACGATCTTGCCATAGCTACGTACGCGCTGCTGCTACAGAAACACAGCTCAGGCGAGCGGTTCTTGGAGAAGCTCATCGGCCTGTCAACGGTGCAGCAGAACGGTACGGAGCGCTTTTGGGCCCGCGATGCGCACGGTATTGAGACGACCGCATACGGGCTGCTTTCTTTCGTGCTCGCGGAGAAGTACGTGGACGGGACCTCCATAATGCGGTGGCTGGTGAAGCAACGCTACACCCCCGGTAGCTTCCCGCGCACGCAGGACACGTTCGTAGGGCTGAAGGCACTTACCAAGCTGGCGGAAAAGATCTCCCCGTCGAGGAATGATTACTCGGTGCAGCTTAGACACGCCGGCCGTAAGGAAGAGTTTCGCGTCACCTCACAAGATATCGGTACGCTTCAGCACGCCCAACAGGGTGTGGATGAGGCGGCTCAGCTCGAACTGCACGTCGCCGGCATCGGTTTTGGGCTGTTGCAGGTAGTGTACGAGTACGGGGTAGACTTGCGCAACTTTACCGCCCAGTTCGTACTGGAGCTACAGAAATCGGTAACCAACGCAAACCACCAGCTGCAGCTTGAGGTGTGCTCGAGCTTTACACCGCAGCTGTCGGACGGCCGCTCGAACATGGTGCTGGTGGAGGTGAAC-TTCCCCAGCGGGTACACCGTGGAGCAGCGCGGGCAACCGATTACCGGTGCAACGAAGCATAATCCGATACAGAAAACGGAAGTACGGTTCGGGGCAACCTCGGTGGTGGTGTACTACAACAGCATGGGCCCGGAGCGGAACTGTTTTACGATCACTGCGTACCGGCGGCAGAAAGTTACACTCAAGCGTCCCGCTTACGTTCTGGTGCATGATTATTACGATCCGAAACTGAACGCCATTAAGATGTACCAAGTGGACGACTAGGATACGTTTGCGATGCAAAGCTTCCGTGGTGAAGCTGTGCAAGTTTCGCATGTGTTTGTACTGAATCTCTTCAACGAAGCGTTAGTTTCAATAACATCACACCAGAAATGTTT]
[+] EMBL BX624617 [GGGCAGTATTGAAGACTCGTACGATCTTGCCATAGCTACGTACGCGCTGCTGCTACAGAAACACAGCTCAGGCGAGCGGTTCTTGGAGAAGCTCATCGGCCTGTCAACGGTGCAGCAGAACGGTACGGAGCGCTTTTGGGCCCGCGATGCGCACGGTATTGAGACGACCGCATACGGGCTGCTTTCTTTCGTGCTCGCGGAGAAGTACGTGGACGGGACCTCCATAATGCGGTGGCTGGTGAAGCAACGCTACACCCCCGGTAGCTTCCCGCGCACGCAGGACACGTTCGTAGGGCTGAAGGCACTTACCAAGCTGGCGGAAAAGATCTCCCCGTCGAGGAATGATTACTCGGTGCAGCTTAGACACGCCGGCCGTAAGGAAGAGTTTCGCGTCACCTCACAAGATATCGGTACGCTTCAGCACGCCCAACAGGGTGTGGATGAGGCGGCTCAGCTCGAACTGCACGTCGCCGGCATCGGTTTTGGGCTGTTGCAGGTAGTGTACGAGTACGGGGTAGACTTGCGCAACTTTACCGCCCAGTTCGTACTGGAGCTACAGAAATCGGTAACCAACGCAAACCACCAGCTGCAGCTTGAGGTGTGCTCGAGCTTTACACCGCAGCTGTCGGACGGCCGCTCGAACATGGTGCTGGTGGAGGTGAAC TTCCCCAGCGGGTACACCGTGGAGCAGCGCGGGCAACCGATTACCGGTGCAACGAAGCATAATCCGATACAGAAAAC ]
[+] EMBL BX623501 [ TCTTGCCATAGCTACGTACGCGCTGCTGCTACAGAAACACAGCTCAGGCGAGCGGTTCTTGGAGAAGCTCATCGGCCTGTCAACGGTGCAGCAGAACGGTACGGAGCGCTTTTGGGCCCGCGATGCGCACGGTATTGAGACGACCGCATACGGGCTGCTTTCTTTCGTGCTCGCGGAGAAGTACGTGGACGGGACCTCCATAATGCGGTGGCTGGTGAAGCAACGCTACACCCCCGGCAGCTTCCCGCGCACGCAGGACACGTTCGTAGGGCTGAAGGCACTTACCAAGCTGGCGGAAAAGATCTCCCCGTCGAGGAATGATTACTCGGTGCAGCTTAGACACGCCGGCCGTAAGAAAGAGTTTCGCGTCACCTCACAAGATATCGGTACGCTTCAGAACGCCCAACAGGGTGTGGATGAGACGGCTCAGCTCGAACTGCACGTCGCCGGCATCGGTTTTGGGCTGTTGCAGGTAGTGTACGAGTACGGTGTAGACTTGCGCAACTTTACCGCCCAGTTCGTACTGGAGCTGCAGAAATCGGTAACCAACGCAAACCACCAGCTGCAGCTTGAGGTGTGCTCGAGCTTTACACCGCAGCTGTCGGACGGCCGCTCGAACATGGTGCTGGTGGANGTGAACTTTCCCCAGCGGGTACACCGTGGAGCAGCGCGGGCAACCGATTACCGGTGCAACGAAGCATAAT ]
[+] EMBL BX618804 [ TACGCTTCAGCACGCCCAACAGGGTGTGGATGAGGCGGCTCAGCTCGAACTGCACGTCGCCGGCATCGGTTTTGGGCTGTTGCAGGTAGTGTACGAGTACGGGGTAGACTTGCGCAACTTTACCGCCCAGTTCGTACTGGAGCTACAGAAATCGGTAACCAACGCAAACCACCAGCTGCAGCTTGAGGTGTGCTCGAGCTTTACACCGCAGCTGTCGGACGGCCGCTCGAACATGGTGCTGGTGGAGGTGAAC TTCCCCAGCGGGTACACCGTGGAGCAGCGCGGGCAACCGATTACCGGTGCAACGAAGCATAATCCGATACAGAAAACGGAAGTACGGTTCGGGGCAACCTCGGTGGTGGTGTACTACAACAGCATGGGCCCGGAGCGGAACTGTTTTACGATCACTGCGTACCGGCGGCAGAAAGTTACACTCAAGCGTCCCGCTTACGTTCTGGTGCATGATTATTACGATCCGAAACTGAACGCCATTAAGATGTACCAAGTGGACGACTAGGATACGTTTGCGATGCAAAGCTTCCGTGGTGAAGCTGTGCAAGTTTCGCATGTGTTTGTACTGAATCTCTTCAACGAAGCGTTAGTTTCAATAACATCACACCAGAAATGTTT]
consensusID : consensus_6888#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 708 fasta sequence
[GAATGATTACTCGGTGCAGCTTAGACACGCCGGCCGTAAGAAAGAGTTTCGCGTCACCTCACAAGATATCGGTACGCTTCAGAACGCCCAACAGGGTGTGGATGAGACGGCTCAGCTCGAACTGCACGTCGCCGGCATCGGTTTTGGGCTGTTGCAGGTAGTGTACGAGTACGGTGTAGACTTGCGCAACTTTACCGCCCAGTTCGTACTGGAGCTGCAGAAATCGGTAACCAACGCAAACCACCAGCTGCAGCTTGAGGTGTGCTCGAGCTTTACACCGCAGCTGTCGGACGGCCGCTCGAACATGGTGCTGGTGGAGGTGAACTTCCCCAGCGGGTACACCGTGGAGCAGCGCGGGCAACCGATTACCGGTGCAACGAAGCATAATCCGATACAGAAAACGGAAGTACGGTTCGGGGCAACCTCGGTGGTGGTGTACTACAACAGCATGGGCCCGGAGCGGAACTGTTTTACGATCACTGCGTACCGGCGGCAAAAAGTTACACTCAAGCGTCCCGCTTACGTTCTGGTGCATGATTATTACGATCCGAAACTGAACGCCATTAAGATGTACCAAGTGGACGACTAGGATACGTTTGCAATGCAAAGCTTCCGTGGTGAAGCTGTGTAAGATTCGGTAAGCAGCTCTAGAAATTCCTTGAACGAAGTAATTTCTCAGCAAATAAATTCTATCTTTTGCAGCATGTG]
[+] EMBL BX623125 [GAATGATTACTCGGTGCAGCTTAGACACGCCGGCCGTAAGAAAGAGTTTCGCGTCACCTCACAAGATATCGGTACGCTTCAGAACGCCCAACAGGGTGTGGATGAGACGGCTCAGCTCGAACTGCACGTCGCCGGCATCGGTTTTGGGCTGTTGCAGGTAGTGTACGAGTACGGTGTAGACTTGCGCAACTTTACCGCCCAGTTCGTACTGGAGCTGCAGAAATCGGTAACCAACGCAAACCACCAGCTGCAGCTTGAGGTGTGCTCGAGCTTTACACCGCAGCTGTCGGACGGCCGCTCGAACATGGTGCTGGTGGAGGTGAACTTCCCCAGCGGGTACACCGTGGAGCAGCGCGGGCAACCGATTACCGGTGCAACGAAGCATAATCCGATACAGAAAACGGAAGTACGGTTCGGGGCAACCTCGGTGGTGGTGTACTACAACAGCATGGGCCCGGAGCGGAACTGTTTTACGATCACTGCGTACCGGCGGCAAAAAGTTACACTCAAGCGTCCCGCTTACGTTCTGGTGCATGATTATTACGATCCGAAACTGAACGCCATTAAGATGTACCAAGTGGACGACTAGGATACGTTTGCAATGCAAAGCTTCCGTGGTGAAGCTGTGTAAGATTCGGTAAGCAGCTCTAGAAATTCCTTGAACGAAGTAATTTCTCAGCAAATAAATTCTATCTTTTGCAGCATGTG]
[+] EMBL BM623232 [ AGCTTTACACCGCAGCTGTCGGACGGCCGCTCGAACATGGTGCTGGTGGAGGTGAACTTCCCCAGCGGGTACACCGTGGAGCAGCGCGGGCAACCGATTACCGGTGCAACGAAGCATAATCCGATACAGAAAACGGAAGTACGGTTCGGGGCAACCTCGGTGGTGGTGTACTACAACAGCATGGGCCCGGAGCGGAACTGTTTTACGATCACTGCGTACCGGCGGCAGAAAGTTACACTCAAGCGTCCCGCTTACGTTCTGGTGCATGATTATTACGATCCGAAACTGAACGCCATTAAGATGTACCAAGTGGACGACTAGGATACGTTTGCAATGCAAAGCTTCCGTGGTGAAGCTGTGTAAGATTCGGTAAGCAGCTCTAGAAATTCCTTGAACGAAGTAATTTCTCAGCAAATAAATTCTATCTTTTGC ]
consensusID : consensus_6888#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 708 fasta sequence
[GCCCCCAGGCTNTTTAAGTGATCGAAAAGGGCATCGACTATGTCACGCGGANGCTGGGCAGTATTGAAGACTCGTACGATCTTGCCATAGCTACGTACGCGCTGCTGCTACAGAAACACAGCTCAGGCGAGCGGTTCTTGGAGAAGCTCGTCGGCTGTACAACGGTGCAGCTATGAACGGTACGGAGCGCTTTTGGGCCCGCTGATGCGCACTGGTATTTGACGACTGACCGCGGTTACGTGGCCTGCTTTCGTTTACGNTTGCTTGGCGNGGACGAAANTAATTGTTGGGACGGGACCTCCCAATAATGCGGGTTGGGCTTGGTTGGAAACGGCCCANACTGGCATTANCAACGCCCCCTTGTGCAGNCTTTTCCCTGCGGCCAACGGCCAAGTGAACACCGTTNTCNTTAAGTGNGGCTTGAACAGGGGCAACCTTTTACCCAAANGCCTTTGGGGCGGGAACACAGGAANTCCTTCACACCCCGGGTTCGGAAGGAGNAACAATTTGCAATTTTTACCCTCCGGGGGGATGGACNCAGGGCCATTTTTNATGAACGCACCCCGCCCGTAGGCCCGGGTATAACAGATGGAAAAGGCGANAGGTTTATATCCCGCCGGTTNCACACACCCTTCNCAACCAAACGGCAAATNNCATTTCCGCGGTTAACCAGCCCTTCCNACGCGAACCAGGCGCACCAAAACGAAA]
[+] EMBL AL695707 [GCCCCCAGGCTNTTTAAGTGATCGAAAAGGGCATCGACTATGTCACGCGGANGCTGGGCAGTATTGAAGACTCGTACGATCTTGCCATAGCTACGTACGCGCTGCTGCTACAGAAACACAGCTCAGGCGAGCGGTTCTTGGAGAAGCTCGTCGGCTGTACAACGGTGCAGCTATGAACGGTACGGAGCGCTTTTGGGCCCGCTGATGCGCACTGGTATTTGACGACTGACCGCGGTTACGTGGCCTGCTTTCGTTTACGNTTGCTTGGCGNGGACGAAANTAATTGTTGGGACGGGACCTCCCAATAATGCGGGTTGGGCTTGGTTGGAAACGGCCCANACTGGCATTANCAACGCCCCCTTGTGCAGNCTTTTCCCTGCGGCCAACGGCCAAGTGAACACCGTTNTCNTTAAGTGNGGCTTGAACAGGGGCAACCTTTTACCCAAANGCCTTTGGGGCGGGAACACAGGAANTCCTTCACACCCCGGGTTCGGAAGGAGNAACAATTTGCAATTTTTACCCTCCGGGGGGATGGACNCAGGGCCATTTTTNATGAACGCACCCCGCCCGTAGGCCCGGGTATAACAGATGGAAAAGGCGANAGGTTTATATCCCGCCGGTTNCACACACCCTTCNCAACCAAACGGCAAATNNCATTTCCGCGGTTAACCAGCCCTTCCNACGCGAACCAGGCGCACCAAAACGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6888#0 GGGCAGTATTGAAGACTCGTACGATCTTGCCATAGCTACGTACGCGCTGCTGCTACAGAA 60
consensus_6888#1 ------------------------------------------------------------
consensus_6888#2 ------------------------------------------------------------
consensus_6888#0 ACACAGCTCAGGCGAGCGGTTCTTGGAGAAGCTCATCGGCCTGTCAACGGTGCAGCAGAA 120
consensus_6888#1 ------------------------------------------------------------
consensus_6888#2 ------------------------------------------------------------
consensus_6888#0 CGGTACGGAGCGCTTTTGGGCCCGCGATGCGCACGGTATTGAGACGACCGCATACGGGCT 180
consensus_6888#1 ------------------------------------------------------------
consensus_6888#2 ------------------------------------------------------------
consensus_6888#0 GCTTTCTTTCGTGCTCGCGGAGAAGTACGTGGACGGGACCTCCATAATGCGGTGGCTGGT 240
consensus_6888#1 ------------------------------------------------------------
consensus_6888#2 ------------------------------------------------------------
consensus_6888#0 GAAGCAACGCTACACCCCCGGTAGCTTCCCGCGCACGCAGGACACGTTCGTAGGGCTGAA 300
consensus_6888#1 ------------------------------------------------------------
consensus_6888#2 ------------------------------------------------------------
consensus_6888#0 GGCACTTACCAAGCTGGCGGAAAAGATCTCCCCGTCGAGGAATGATTACTCGGTGCAGCT 360
consensus_6888#1 ---------------------------------------GAATGATTACTCGGTGCAGCT 21
consensus_6888#2 ------------------------GCCCCCAGGCTNTTTAAGTGATCGAAAAGGGCA--T 34
* **** * *** *
consensus_6888#0 TAGACACGCCGGCCGTAAGGAAGAGTTTCGCGTCACCTCACAAGATATCGGTACGCTTCA 420
consensus_6888#1 TAGACACGCCGGCCGTAAGAAAGAGTTTCGCGTCACCTCACAAGATATCGGTACGCTTCA 81
consensus_6888#2 CGACTATGTCACGCGGANGCTGGGCAGTATTGAAGACTCGTACGATCTTGCCATAGCTAC 94
* * * ** * * * * * *** * *** * * * *
consensus_6888#0 GCACGCCCAACAGGGTGTGGATGAGGCGGCTCAGCTCGAACTGCACGTCGCCGG---CAT 477
consensus_6888#1 GAACGCCCAACAGGGTGTGGATGAGACGGCTCAGCTCGAACTGCACGTCGCCGG---CAT 138
consensus_6888#2 GTACGCGCTGCTGC-TACAGA-AACACAGCTCAGG-CGAGCGGTTCTTGGAGAAGCTCGT 151
* **** * * * * ** * * ****** *** * * * * * * *
consensus_6888#0 CGGTTTTGGGCTGTTGCAGGTAGTGTACGAGTACGGGGTAGACTTGCGCAACTTTACCGC 537
consensus_6888#1 CGGTTTTGGGCTGTTGCAGGTAGTGTACGAGTACGGTGTAGACTTGCGCAACTTTACCGC 198
consensus_6888#2 CGGCTGTACAACGGTGCAGCTA-TGAACG-GTACGGAGCGCTTTTGGGCC-CGCTGATGC 208
*** * * * ***** ** ** *** ****** * *** ** * * **
consensus_6888#0 CCAGTTCGTACTGGAGCTACAGAAATCGGTAACCAACGCAAACCACCAGCTGCAGCT-TG 596
consensus_6888#1 CCAGTTCGTACTGGAGCTGCAGAAATCGGTAACCAACGCAAACCACCAGCTGCAGCT-TG 257
consensus_6888#2 GCA-CTGGTATTTGA-CGACTGACCGCGGTTAC-GTGGCCTGCTTTCGTTTACGNTTGCT 265
** * *** * ** * * ** **** ** ** * * * * *
consensus_6888#0 AGGTGTGCTCGAGCTTTAC-ACCGCAGCTG--TCGGACGGCCGCTCGAACATGGTGCTGG 653
consensus_6888#1 AGGTGTGCTCGAGCTTTAC-ACCGCAGCTG--TCGGACGGCCGCTCGAACATGGTGCTGG 314
consensus_6888#2 TGGCGNGGACGAAANTAATTGTTGGGACGGGACCTCCCAATAATGCGGGTTGGGCTTGGT 325
** * * *** * * * * * * * ** ** *
consensus_6888#0 TGGAGGTGAACTTCCCCAGCGGGTACACCGTGGAGCAGCGCGGGCAACCGATTACCGGTG 713
consensus_6888#1 TGGAGGTGAACTTCCCCAGCGGGTACACCGTGGAGCAGCGCGGGCAACCGATTACCGGTG 374
consensus_6888#2 TGGAAACGGCCCANACTGGCATTANCAACGCCCCCTTGTGCAGNCTTTTCCCTGCGGCCA 385
**** * * * ** ** ** * ** * * * * *
consensus_6888#0 -CAACGAAGCATAATCCGATACAGAAAACGGAAGTACGGTTCGGGGCAACCTCGGTGGTG 772
consensus_6888#1 -CAACGAAGCATAATCCGATACAGAAAACGGAAGTACGGTTCGGGGCAACCTCGGTGGTG 433
consensus_6888#2 ACGGCCAAGTGAACACCGTTNTCNTTAAGTGNGGCTTGAACAGGGGCAACCTTT-TACCC 444
* * *** * *** * ** * * * ********** *
consensus_6888#0 GTGTACTACAACAGCATGGGCCCGGAGCGGAACTGTTTTACGATCACTGCGTACCGGCGG 832
consensus_6888#1 GTGTACTACAACAGCATGGGCCCGGAGCGGAACTGTTTTACGATCACTGCGTACCGGCGG 493
consensus_6888#2 AAANGCCTTTGGGGCGGGAACACAG----GAANTCCTTCACACCCCGGGTTCGGAAGGAG 500
* ** * * * * *** * ** ** * * * *
consensus_6888#0 CAGAAAGTTACA---CTCAAGCGTCCCGCTTACGTTCTGGTGCATGATTATTACGATCCG 889
consensus_6888#1 CAAAAAGTTACA---CTCAAGCGTCCCGCTTACGTTCTGGTGCATGATTATTACGATCCG 550
consensus_6888#2 NAACAATTTGCAATTTTTACCCTCCGGGGGGATGGACNCAGGGCCATTTTTNATGAACGC 560
* ** ** ** * * * * * * * * * ** * * ** *
consensus_6888#0 AAACTGAACGCCA-TTAAGATGTACCAAGTGGACGACTAGGATACGTTTGCGATGCAAAG 948
consensus_6888#1 AAACTGAACGCCA-TTAAGATGTACCAAGTGGACGACTAGGATACGTTTGCAATGCAAAG 609
consensus_6888#2 ACCCCGCCCGTAGGCCCGGGTATAACAGATGGAAAAG-GCGANAGGTTTATATCCCGCCG 619
* * * ** * * ** ** **** * ** * **** * *
consensus_6888#0 CTTCCGTGGTGAAGCTGTGCAAGTTT-CG-CATGTGTTTGTACTGAATCTCTTCAACGAA 1006
consensus_6888#1 CTTCCGTGGTGAAGCTGTGTAAGATT-CGGTAAGCAGCTCTAG-AAATTCCTTGAACGAA 667
consensus_6888#2 GTTNCACAC--ACCCTTCNCAACCAAACGGCAAATNNCATTTCCGCGGTTAACCAGCCCT 677
** * * ** ** ** * * * *
consensus_6888#0 GCGTTAGTTT--CAATAACATCACACCA---GAAATGTTT- 1041
consensus_6888#1 GTAATTTCTCAGCAAATAAATTCTATCTTTTGCAGCATGTG 708
consensus_6888#2 TCCNACGCGAACCAGGCGCACCAAAAC----GAAA------ 708
** * * * * *
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||