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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6889#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1312 fasta sequence
[CCGCGGACGCGTGGGGCGCGCTCAAACAAGATCGTTCGCCCGTCGGTACCGAACGTGC----GTGTGTCGCTCCAGTAACAAAATTTCACTGTG----TACAGCTCGCGGTCCGTTGTTTTGTTTGTTGTTTGTGTTTTCCAAGTGC------GTGTGTGTGTGCATGTTCTTTATGTTTCCCTTTCCGTCCTTCCGTGGATAGGACGGACGAGGTGTGGCGCCGCTTCCCGTGGCTGG-CTGATAAAGTGTGGGAAAAATAACGAGCCTTTTCCCCTAGATCGGTCGCCGTGAAATATTGATCCG-G-GC--GCGTGTGTGTGTGTGTGTTTTTGCAAAAATCTCATCACCTTCCCGTCTGAAGGGGAGCGCTGCTAACCAGGAGGATCCATGAGGCGTCACCACTGAGAAAACCAGCCCACAATGATTAGTGCAATAGTTTCGCGTTTAGTGATACTACTGTTCGGTACGCTGTACCCGGCCTACGCCTCGTACAAGGCGGTGCGAACGAAGAACGTCAAGGAGTATGTAAAATGGATGATGTACTGGATTGTGTTTGCGTTCTTCACCTTCATCGAAACGTTCACCGACATACT-GCTGTCGTGGTTTCCGTTCTACTACGAAA-TTAAGGTGATCGTCGTCCTGTGGCTGCTGTCACCGGCTACCCGCGGTAGCTCGACACTCTATCGCAAGTTTGTGCACCCGATGCTGACACGCCGCGAACAGGAAATTGACGACTACATCAATCAAGCCAAAGAGAAGGGTTACACCGCCGTGCTGCAGCTGGGCTCGAAGGGTGTTAACTATGCCACGAACGTTATCATGCAAACGGCCATCAAGGGTGGTGGTGGGCTTGTGCAAACGCTACGTAAAAGCTACAGCTTGAGCGATCTCTCCGAACCGGACACGCAGCGAACGCAGGACGAGGTCGATGAGATTGTGAACCGGCCGCAGCGCGTGCTACGGTCGAAGAGCTCTCGATCGTCGTCCGGCAGCCGGCAGATGGAGATGTACTTCCCGGAGGTGGAGATTGCCGCCGGTGCACCGTACCATGCGACTGCAGCGCCCCCGTACAACTACATTCGCTCGTCCGACGATATTAGCTCGGGATACTCGAGCGCCGAACCAGGTCTGAGCCGAACGGCGTCGATGAGCAACACGGCACGCCCGAGACTGAAATCAAAAACGCGAGAAGAAAAGATGTCGGCCAGCTGTACGACGCTACCACGCACCAAGAAGCCGGAAAAGGTCACCAAAACACGCTCGAAAACGGAGAAACCGTCAGTTTAGGCGAGTGTGCTGCCGCCATCCGTTTTCTTTCCCTGTGCCC]
[+] EMBL BM600958 [CCGCGGACGCGTGGGGCGCGCTCAAACAAGATCGTTCGCCCGTCGGTACCGAACGTGC GTGTGTCGCTCCAGTAACAAAATTTCACTGTGTACCTACAGCTCGCGGTCCGTTGTTTTGTTTGTTGTTTGTGTTTTCCAAGTGC GTGTGTGTGTGCATGTTCTTTATGTTTCCCTTTCCGTCCTTCCGTGGATAGGACGGACGAGGTGTGGCGCCGCTTCCCGTGGCTGG CTGATAAAGTGTGGGAAAAATAACGAGCCTTTTCCCCTAGATCGGTCGCCGTGAAATATTGATCCG G GC GCGTGTGTGTGTGTGTGTTTTTGCAAAAATCTCATCACCTTCCCGTCTGAAGGGGAGCGCTGCTAACCAGGAGGATCCATGAGGCGTCACCACTGAGAAAACCAGCCCACAATGATTAGTGCAATAGTTTCGCGTTTAGTGATACTACTGTTCGGTACGCTGTACCCGGCCTACGCCTCGTACAAGGCGGTGCGAACGAAGAACGTCAAGGAGTATGTAAAATGGATGATGTACTGGATTGTGTTTGCGTTCTTCACCTTCATCGAAACGTTCACCGACATACTGGCTGTCGTGGTTTCCGTTCTACTACGAAATTTAAGGTGATCGTCGTCCTGT ]
[+] EMBL BM653391 [ cCGCCCGTCGGTACCGAACGTGCGAGTGTGTGTCGCTCCAGTAACAAAATTTCACTGTG TACAGCTCGCGGTCCGTTGTTTTGTTTGTTGTTTGTCTTTTTCCAGTGCGTGTGTGTGTGTGTGTGCATGTTCTTTATGTTTCCCTTTCCGTCCTTCCGTGGATAGGACGGACGAGGTGTGGCGCCGTATCCCGTGGCTGGTTTGATAAAGTGTGGGAAAAATAACGAGCCTTTTCCCCTAGATCGGTCGCCGTGAAATATTGATCCGTGTGCGTGTGTGTGTGTGTGTGTGTTTTTGCAAAAATCTCATCACCTGCCCGTCTGAAAGGGAGCGCTGCTAACCAGGAGGATCCATGAGGCGTCACCACTGAGAAAACCAGCCCACAATGATTAGTGCAATAGTTTCGCGTTTAGTGATACTACTGTTCGGTACGCTGTACCCGGCCTACGCCTCGTACAAGGCGGTGCGAACGAAGAACGTCAAGGAGTATGTAAAATGGATGATGTACTGGATTGTGTTTGCGTTCTTCACCTTCATCGAAACGTTCACCGACATACT GCTGTCGTGGTTTCCGTTCTACTACGAAA TTAAGGTGATCGTCGTCCTGTGGCTGCTGTCACCGGCTACCCGCGGTAGCTCGACACTCTATCGCAAGTTTGTGCACCCGATGCTGACACGCC ]
[+] EMBL BM624903 [ ccgGATCGTCGTCCTGTGGCTGCTGTCACCGGCTACCCGCGGTAGCTCGACACTCTATCGCAAGTTTGTGCACCCGATGCTGACACGCCGCGAACAGGAAATTGACGACTACATCAATCAAGCCAAAGAGAAGGGTTACACCGCCGTGCTGCAGCTGGGCTCGAAGGGTGTTAACTATGCCACGAACGTTATCATGCAAACGGCCATCAAGGGTGGTGGTGGGCTTGTGCAAACGCTACGTAAAAGCTACAGCTTGAGCGATCTCTCCGAACCGGACACGCAGCGAACGCAGGACGAGGTCGATGAGATTGTGAACCGGCCGCAGCGCGTGCTACGGTCGAAGAGCTCTCGATCGTCGTCCGGCAGCCGGCAGATGGAGATGTACTTCCCGGAGGTGGAGATTGCCGCCGGTGCACCGTACCATGCGACTGCAGCGCCCCCGTACAACTACATTCGCTCGTCCGACGATATTAGCTCGGGATACTCGAGCGCCGAACCAGGTCTGAGCCGAACGGCGTCGATGAGCAACACGGCACGCCCGAGACTGAAATCAAAAACGCGAGAAGAAAAGATGTCGGCCAGCTGTACGACGCTACCACGCACCAAGAAGCCGGAAAAGGTCACCAAAACACGCTCGAAAACGGAGAAACCGTCAGTTTAGGCGAGTGTGCTGCCGCCATCCGTTTTCTTTCCCTGTGCCC]
consensusID : consensus_6889#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 772 fasta sequence
[GCGGGCGATCGGTTCGAATATACTGTTTCCCGGTTTCAGACTACTGTTCGGTACGCTGTACCCGGCCTACGCCTCGTACAAGGCGGTGCGAACGAAGAACGTCAAGGAGTATGTAAAATGGATGATGTACTGGATTGTGTTTGCGTTCTTCACCTTCATCGAAACGTTCACCGACATACTGCTGTCGTGGTTTCCGTTCTACTACGAAATTAAGGTGATCGTCGTCCTGTGGCTGCTGTCACCGGCTACCCGCGGTAGCTCGACACTCTATCGCAAGTTTGTGCATCCGATGCTGACACGCCGCGAACAGGAAATTGACGACTACATCAATCAAGCCAAAGAGAAGGGTTACACCGCCGTGCTGCAGCTGGGCTCGAAGGGTGTTAACTATGCCACGAACGTTATCATGCAAACGGCCATCAAGCACGTACCGACTGAACAGCTTCTGAATCTGACGCTCAAATCAAACGAATCGTAACTGGTAGAAGAAGTAGTAGTAGTAAACAAACTCATGTAACATGATTTCATACACACACACATGCTCTCTCTCTCTCTCTTGCACAAGAGTTTGAAGGGTGTTGCCGCGTAAAAAAAAAGAATTTTGGTGCAAATCACTGGGAAATTAAAGAGTAGAACCAAAATCAACATCAGCCATCGTGTGTTTGTTTACATTTTAGGATTTAAGGGGGCCACATGCTATATAGCTTAAATTACGAACAGGGTGGCTTTTCTTTTTGTGCTTAGAACAGAACAAAAGAACAATTAGCTGCTT]
[+] EMBL BX622298 [GCGGGCGATCGGTTCGAATATACTGTTTCCCGGTTTCAGACTACTGTTCGGTACGCTGTACCCGGCCTACGCCTCGTACAAGGCGGTGCGAACGAAGAACGTCAAGGAGTATGTAAAATGGATGATGTACTGGATTGTGTTTGCGTTCTTCACCTTCATCGAAACGTTCACCGACATACTGCTGTCGTGGTTTCCGTTCTACTACGAAATTAAGGTGATCGTCGTCCTGTGGCTGCTGTCACCGGCTACCCGCGGTAGCTCGACACTCTATCGCAAGTTTGTGCATCCGATGCTGACACGCCGCGAACAGGAAATTGACGACTACATCAATCAAGCCAAAGAGAAGGGTTACACCGCCGTGCTGCAGCTGGGCTCGAAGGGTGTTAACTATGCCACGAACGTTATCATGCAAACGGCCATCAAGCACGTACCGACTGAACAGCTTCTGAATCTGACGCTCAAATCAAACGAATCGTAACTGGTAGAAGAAGTAGTAGTAGTAAACAAACTCATGTAACATGATTTCATACACACACACATGCTCTCTCTCTCTCTCTTGCACAAGAGTTTGAAGGGTGTTGCCGCGTAAAAAAAAAGAATTTTGGTGCAAATCACTGGGAAATTAAAGAGTAGAACCAAAATCAACATCAGCCATCGTGTGTTTGTTTACATTTTAGGATTTAAGGGGGCCACATGCTATATAGCTTAAATTACGAACAGGGTGGCTTTTCTTTTTGTGCTTAGAACAGAACAAAAGAACAATTAGCTGCTT]
[+] EMBL BX628428 [ GTCGTGGTTTCCGTTCTACTACGAAATTAAGGTGATCGTCGTCCTGTGGCTGCTGTCACCGGCTACCCGCGGTAGCTCGACACTCTATCGCAAGTTTGTGCATCCGATGCTGACACGCCGCGAACAGGAAATTGACGACTACATCAATCAAGCCAAAGAGAAGGGTTACACCGCCGTGCTGCAGCTGGGCTCGAAGGGTGTTAACTATGCCACGAACGTTATCATGCAAACGGCCATCAAGCACGTACCGACTGAACAGCTTCTGAATCTGACGCTCAAATCAAACGAATCGTAACTGGTAGAAGAAGTAGTAGTAGTAAACAAACTCATGTAACATGATTTCATACACACACACATGCTCTCTCTCTCTCTCTTGCACAAGAGTTTGAAGGGTGTTGCCGCGTAAAAAAAAAGAATTTTGGTGCAAATCACTGGGAAATTAAAGAGTAGAACCAAAATCAACATCAGCCATCGTGTGTTTGTTTACATTTTAGGATTTAAGGGGGCCACATGCTATATAGCTTAAATTACGAACAGGTTGGCTTTTCTTTTTGTG ]
consensusID : consensus_6889#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence
[CATTGTCTGTTAATTNNGTTATTTTTTTTTTCTGTGCACAACTGGGCAATTGTCGTTCTCTCTTTCTCTCTTCCTCTACTCTCTCTCTCTTCTATTGCAGCACGTACCGACTGAACAGCTTCTGAATCTGACGCTCAAATCAAACGAATCGTAACTGGTAGAAGAAGTAGTAGTAGTAAACAAACTCATGTAACATGATTTCATACACACACACATGCTCTCTCTCTCTCTCTTGCACAAGAGTTTGAAGGGTGTTGCCGCGTAAAAAAAAAGAATTTTGGTGCAAATCACTGGGAAATTAAAGAGTAGAACCAAAATCAACATCAGCCATCGTGTGTTTGTTTACATTTTAGGATTTAAGGGGGCCACATGCTATATAGCTTAAATTACGAACAGGTTGGCTTTTCTTTTTGTGCTTAGAACAGAACAAAAGAACAAATTAGCTGCTTGTTTTGAATTTATAGTTTTCGGTTGGAAGCAGATCTCGAATAACCTGCCAAGGGAAGGGAGTAGAACAATGATAAACACGCACAAAAATACAGAAAGGAACAGTTTAGGACTGTGACAAGACTTTTGATGAGGTGTAAGTGTGTAAAGGACATTATAGCAAAGGTTA]
[+] EMBL BX624161 [CATTGTCTGTTAATTNNGTTATTTTTTTTTTCTGTGCACAACTGGGCAATTGTCGTTCTCTCTTTCTCTCTTCCTCTACTCTCTCTCTCTTCTATTGCAGCACGTACCGACTGAACAGCTTCTGAATCTGACGCTCAAATCAAACGAATCGTAACTGGTAGAAGAAGTAGTAGTAGTAAACAAACTCATGTAACATGATTTCATACACACACACATGCTCTCTCTCTCTCTCTTGCACAAGAGTTTGAAGGGTGTTGCCGCGTAAAAAAAAAGAATTTTGGTGCAAATCACTGGGAAATTAAAGAGTAGAACCAAAATCAACATCAGCCATCGTGTGTTTGTTTACATTTTAGGATTTAAGGGGGCCACATGCTATATAGCTTAAATTACGAACAGGTTGGCTTTTCTTTTTGTGCTTAGAACAGAACAAAAGAACAAATTAGCTGCTTGTTTTGAATTTATAGTTTTCGGTTGGAAGCAGATCTCGAATAACCTGCCAAGGGAAGGGAGTAGAACAATGATAAACACGCACAAAAATACAGAAAGGAACAGTTTAGGACTGTGACAAGACTTTTGATGAGGTGTAAGTGTGTAAAGGACATTATAGCAAAGGTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6889#1 ------------------------------------------------------------
consensus_6889#2 ------------------------------------------------------------
consensus_6889#0 CCGCGGACGCGTGGGGCGCGCTCAAACAAGATCGTTCGCCCGTCGGTACCGAACGTGCGT 60
consensus_6889#1 ------------------------------------------------------------
consensus_6889#2 ------------------------------------------------------------
consensus_6889#0 GTGTCGCTCCAGTAACAAAATTTCACTGTGTACAGCTCGCGGTCCGTTGTTTTGTTTGTT 120
consensus_6889#1 ------------------------------------------------------------
consensus_6889#2 ------------------------------------------------------------
consensus_6889#0 GTTTGTGTTTTCCAAGTGCGTGTGTGTGTGCATGTTCTTTATGTTTCCCTTTCCGTCCTT 180
consensus_6889#1 ------------------------------------------------------------
consensus_6889#2 ------------------------------------------------------------
consensus_6889#0 CCGTGGATAGGACGGACGAGGTGTGGCGCCGCTTCCCGTGGCTGGCTGATAAAGTGTGGG 240
consensus_6889#1 ------------------------------------------------------------
consensus_6889#2 ------------------------------------------------------------
consensus_6889#0 AAAAATAACGAGCCTTTTCCCCTAGATCGGTCGCCGTGAAATATTGATCCGGGCGCGTGT 300
consensus_6889#1 ------------------------------------------------------------
consensus_6889#2 ------------------------------------------------------------
consensus_6889#0 GTGTGTGTGTGTTTTTGCAAAAATCTCATCACCTTCCCGTCTGAAGGGGAGCGCTGCTAA 360
consensus_6889#1 --------------------------------------GCGGGCGATCGGTTCGAATATA 22
consensus_6889#2 ------------------------------------------------------------
consensus_6889#0 CCAGGAGGATCCATGAGGCGTCACCACTGAGAAAACCAGCCCACAATGATTAGTGCAATA 420
consensus_6889#1 CTGTTTCCCGGTTTCAGACTACTGTTCGGTACGCTGTACCCGGCCTACGCCTCGTACAAG 82
consensus_6889#2 ------------------------------------------------------------
consensus_6889#0 GTTTCGCGTTTAGTGATACTACTGTTCGGTACGCTGTACCCGGCCTACGCCTCGTACAAG 480
consensus_6889#1 GCGGTGCGAACGAAGAACGTCAAGGAGTATGTAAAATGGATGATGTACTGGATTGTGTTT 142
consensus_6889#2 ------------------------------------------------------------
consensus_6889#0 GCGGTGCGAACGAAGAACGTCAAGGAGTATGTAAAATGGATGATGTACTGGATTGTGTTT 540
consensus_6889#1 GCGTTCTTCACCTTCATCGAAACGTTCACCGACATACTGCTGTCGTGGTTTCCGTTCTAC 202
consensus_6889#2 ------------------------------------------------------------
consensus_6889#0 GCGTTCTTCACCTTCATCGAAACGTTCACCGACATACTGCTGTCGTGGTTTCCGTTCTAC 600
consensus_6889#1 TACGAAATTAAGGTGATCGTCGTCCTGTGGCTGCTGTCACCGGCTACCCGCGGTAGCTCG 262
consensus_6889#2 ------------------------------------------------------------
consensus_6889#0 TACGAAATTAAGGTGATCGTCGTCCTGTGGCTGCTGTCACCGGCTACCCGCGGTAGCTCG 660
consensus_6889#1 ACACTCTATCGCAAGTTTGTGCATCCGATGCTGACACGCCGCGAACAGGAAATTGACGAC 322
consensus_6889#2 ------------------------------------------------------------
consensus_6889#0 ACACTCTATCGCAAGTTTGTGCACCCGATGCTGACACGCCGCGAACAGGAAATTGACGAC 720
consensus_6889#1 TACATCAATCAAGCCAAAGAGAAGGGTTACACCGCCGTGCTGCAGCTGGGCTCGAAGGGT 382
consensus_6889#2 --CATTG-TCTGTTAATTNNGTTATTTTTTTTTTCTGTGC-ACAACTGGGCAATTGTCGT 56
consensus_6889#0 TACATCAATCAAGCCAAAGAGAAGGGTTACACCGCCGTGCTGCAGCTGGGCTCGAAGGGT 780
*** ** * * ** * **** ** ****** **
consensus_6889#1 GTTAACTATGCCACGAACGTTA-TCATGCAAACGGCCATCA-AGCACGTACCGA--CTGA 438
consensus_6889#2 TCTCTCTTTCTCTCTTCCTCTACTCTCTCTCTCTTCTATTGCAGCACGTACCGA--CTGA 114
consensus_6889#0 GTTAACTATGCCACGAACGTTA-TCATGCAAACGGCCATCAAGGGTGGTGGTGGGCTTGT 839
* ** * * * * ** ** * * * ** * ** * **
consensus_6889#1 ACAGCTTCTGAATCTGACGCTCAAATCAAACGAATCGT---AACTGG-----TAGAAGAA 490
consensus_6889#2 ACAGCTTCTGAATCTGACGCTCAAATCAAACGAATCGT---AACTGG-----TAGAAGAA 166
consensus_6889#0 GCAAACGCTACGTAAAAGCTACAGCTTGAGCGATCTCTCCGAACCGGACACGCAGCGAAC 899
** ** * * ** * * *** * *** ** ** *
consensus_6889#1 GTAGTA-GTAGTAAACAAACTCATGTA------ACATGATTTCATACACACACACATGCT 543
consensus_6889#2 GTAGTA-GTAGTAAACAAACTCATGTA------ACATGATTTCATACACACACACATGCT 219
consensus_6889#0 GCAGGACGAGGTCGATGAGATTGTGAACCGGCCGCAGCGCGTGCTACGGTCGAAGA-GCT 958
* ** * * ** * * * ** * ** * *** * * * ***
consensus_6889#1 CTCTCTCTCTCTCTTGCA--CAAGAGTTTGAAGGGTGTTGCCGCGTAAAAAAAAAGAATT 601
consensus_6889#2 CTCTCTCTCTCTCTTGCA--CAAGAGTTTGAAGGGTGTTGCCGCGTAAAAAAAAAGAATT 277
consensus_6889#0 CTCGATCGTCGTCCGGCAGCCGGCAGATGGAGATGTACTTCCCGGAGGTGGAGATTGCCG 1018
*** ** ** *** * ** * ** ** * ** * * *
consensus_6889#1 TTGGTGCAAATCACTGGGAAATTAAAGAGTAGAACCAAAATCAACATCAGCCATCGTGTG 661
consensus_6889#2 TTGGTGCAAATCACTGGGAAATTAAAGAGTAGAACCAAAATCAACATCAGCCATCGTGTG 337
consensus_6889#0 CCGGTGCACCGTACCATGCGACTGCAGCGCCCCCGTACAACTA-CATTCGC--TCGTCCG 1075
****** ** * * * ** * * ** * *** ** **** *
consensus_6889#1 TTTGTTTACATTTTAGGATTTAAGGGGGCCACATGCTATATAGCTTAAATTACGAACAGG 721
consensus_6889#2 TTTGTTTACATTTTAGGATTTAAGGGGGCCACATGCTATATAGCTTAAATTACGAACAGG 397
consensus_6889#0 ACGATAT-TAGCTCGGGATACTCGAGCGCCGAACCAGGTCTGAGCCGAACGGCG--TCGA 1132
* * * * **** * * *** * * * ** ** *
consensus_6889#1 GTGGCTTTTCTTTTTGTGCTTAGAACAGAACAAAAGAACAA-TTAGCTGCTT-------- 772
consensus_6889#2 TTGGCTTTTCTTTTTGTGCTTAGAACAGAACAAAAGAACAAATTAGCTGCTTGTTTTGAA 457
consensus_6889#0 TGAGCAACACGGC--ACGCCCGAGACTGAAATCAAAAACG---------------CGAGA 1175
** * ** ** *** ** ***
consensus_6889#1 ------------------------------------------------------------
consensus_6889#2 TTTATAGTTTTCGGTTGGAAGCAGATCTCGAATAACCTGCCAAGGGAAGGGAGTAGAACA 517
consensus_6889#0 AGAAAAGATGTCGGCCAGCTGTACGACGCTACCA-CGCACCAAGAAGCCGGAAAAGGTCA 1234
consensus_6889#1 ------------------------------------------------------------
consensus_6889#2 ATGATAAACACGCACAAAAATACAGAAAGGAACAGTTTAGG--ACTGTGACAAGACTTTT 575
consensus_6889#0 CCAA--AACACGCTCGAAAACGGAGAAACCGTCAGTTTAGGCGAGTGTGCTGCCGCCATC 1292
consensus_6889#1 -----------------------------------------
consensus_6889#2 GATGAGGTGTAAGTGTGTAAAGGACATTATAGCAAAGGTTA 616
consensus_6889#0 CGTTTTCTTTCCCTGTGCCC--------------------- 1312
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||