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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6892#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 808 fasta sequence
[GTGGTTTTGACTGGGTTAAAAATTCTTCAAAAACACAGTTAAACTTAACTTCAGTTAAACACAGATCAATTCACCTCAAGCCATGCAGTCACCACCGGAAAAAGCAAAATCAATTTTTGAATTTACCGTCACCGATCTGAACGGTAATGAGGTTTCGCTCGACCGCTACCAGGGATCGGTGTGCCTGATCGTGAACTTCTCTACCAAGGATGCCACCTTTGAGAAGGTGTTGAGTCTTCTCACGCCTCTGTTCCGAAAGTATCACAACGACACCCGAAAAGATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAAGAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCAGCACCGATAGCAGCGGTATGATCGGTGAGATTTTCACCGAGATTGAGGTGAACGGCTCGAAAGCCCCCGGACTGTACAAGTATCTGAAGGCGAAAAAACCGGGCAACTGCGGAGGATTTATCAACAGCAACTTTACCATCTTTCTTACCGACCGCCAAGGCGTACCGGTGGAAAGGTTAAATGCTGGAATTCATCCTTACACGCTCGAGGACATGGTCGAGAATTTGTTACGCTAAACTGTGCTGCTAACCGTGTTACTAGAAATAAAGCATAGAACAAATCCAGCTGCCAGCTGCGGGCTGTTTAACTTTGTGTTAGTTTTACAGCGTTTCTGTTTTTGTTTGTATGCCATAACGAGTCGTTAACTTCATTCACAAAATGTGTTGAGCATGAAACATTCATATATTGNCAACGCATCATTGAAGCTTTCGCGATTAAAGNTTAAT]
[+] EMBL BX625288 [GTGGTTTTGACTGGGTTAAAAATTCTTCAAAAACACAGTTAAACTTAACTTCAGTTAAACACAGATCAATTCACCTCAAGCCATGCAGTCACCACCGGAAAAAGCAAAATCAATTTTTGAATTTACCGTCACCGATCTGAACGGTAATGAGGTTTCGCTCGACCGCTACCAGGGATCGGTGTGCCTGATCGTGAACTTCTCTACCAAGGATGCCACCTTTGAGAAGGTGTTGAGTCTTCTCACGCCTCTGTTCCGAAAGTATCACAACGACACCCGAAAAGATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAAGAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCAGCACCGATAGCAGCGGTATGATCGGTGAGATTTTCACCGAGATTGAGGTGAACGGCTCGAAAGCCCCCGGACTGTACAAGTATCTGAAGGCGAAAAAACCGGGCAACTGCGGAGGATTTATCAACAGCAACTTTACCATCTTTCTTACCGACCGCCAAGGCGTACCGGTGGAAAGGTTAAATGCTGGAATTCATCCTTACACGCTCGAGGACATGGTCGAGAATTTGTTACGCTAAACTGTGCTGCTAACCGTGTTACTAGAAATAAAGCATAGAACAAATCCAGCTGCCAGCTGCGGGCTGTTTAACTTTGTGTTAGTTTTACAGCGTTTCTGTTTTTGTTTGTATGCCATAACGAGTCGTTAACTTCATTCACAAAATGTGTTGAGCATGAAACATTCATATATTGNCAACGCATCATTGAAGCTTTCGCGATTAAAGNTTAAT]
consensusID : consensus_6892#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 691 fasta sequence
[CCTACTGGAGTACAGCGCGAATTGTTAGCACGAGTAGATTAGTTGGTAAGAGTGGTTTTGGCTGGGTTAAAAATTCTTCAAAAACAGTTAAACACAGATCAATTCATTGCAAGCCATGCAGTCACCACCGGAAAAAGCAAAATCAATTTTTGAATTTACCGTCACCGATCTGAACGGTAATGAGGTTTCGCTCGACCGCTACCAGGGATCGGTGTGCCTAATCGTGAACTTCTCTACCAAGGATGCCACCTTTGAGAAGGTGTTGAGTCTTCTCACGCCTCTGTTCCGAAAGTATCACAACGACACCCGAAAAGATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAAGAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCAGCACCGATAGCAGCGGTATGATCGGTGAGATTTTCACCGAGATTGAGGTGAACGGCTCGAAAGCCCCCGGACTGTACAAGTATCTGAAGGCGAAAAAACCGGGCAACTGCGGAGGATTTATCAACAGCAACTTTACCATCTTTCTTACCGACCGCCAAGGCGTACCGGTGGAAAGGTTAAATGCTGGAATTCATCCTTACACGCTCGAGGACATGGTCGAGAATTTGTTACGCTAAACTGTGCTGCTAACCGTGTTACTAGAAATAAAGCATAGAACAAATCCAGCTGCCAGCTGC]
[+] EMBL CNS091PK [CCTACTGGAGTACAGCGCGAATTGTTAGCACGAGTAGATTAGTTGGTAAGAGTGGTTTTGGCTGGGTTAAAAATTCTTCAAAAACAGTTAAACACAGATCAATTCATTGCAAGCCATGCAGTCACCACCGGAAAAAGCAAAATCAATTTTTGAATTTACCGTCACCGATCTGAACGGTAATGAGGTTTCGCTCGACCGCTACCAGGGATCGGTGTGCCTAATCGTGAACTTCTCTACCAAGGATGCCACCTTTGAGAAGGTGTTGAGTCTTCTCACGCCTCTGTTCCGAAAGTATCACAACGACACCCGAAAAGATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAAGAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCATCACCGATAGCAGCGGTATGATCGGTGAGATTTTCACCGAGATTGAGGTGAACGGCTCGAAAGCCCCCGGACTGTACAAGTATCTGAAGGCGAAAAAACCGGGCAACTGCGGAGGATTTATCAACAGCAACTTTACCATCTTTCTTACCGACCGCCAAGGCGTACCGGTGGAAAGGTTAAATGCTGGAATTCATCCTTACACGCTCGAGGACATGGTCGAGAATTTGTTACGCTAAACTG ]
[-] EMBL CNS091PL [ GATTAGTTGGTAAGAGTGGTTTTGGCTGGGTTAAAAATTCTTCAAAAACAGTTAAACACAGATCAATTCATTGCAAGCCATGCAGTCACCACCGGAAAAAGCAAAATCAATTTTTGAATTTACCGTCACCGATCTGAACGGTAATGAGGTTTCGCTCGACCGCTACCAGGGATCGGTGTGCCTAATCGTGAACTTCTCTACCAAGGATGCCACCTTTGAGAAGGTGTTGAGTCTTCTCACGCCTCTGTTCCGAAAGTATCACAACGACACCCGAAAAGATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAAGAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCAGCACCGATAGCAGCGGTATGATCGGTGAGATTTTCACCGAGATTGAGGTGAACGGCTCGAAAGCCCCCGGACTGTACAAGTATCTGAAGGCGAAAAAACCGGGCAACTGCGGAGGATTTATCAACAGCAACTTTACCATCTTTCTTACCGACCGCCAAGGCGTACCGGTGGAAAGGTTAAATGCTGGAATTCATCCTTACACGCTCGAGGACATGGTCGAGAATTTGTTACGCTAAACTGTGCTGCTAACCGTGTTACTAGAAATAAAGC ]
[+] EMBL BX626655 [ ATTAGTTGGTAAGAGTGGTTTTGGCTGGGTTAAAAATTCTTCAAAAACAGTTAAACACAGATCAATTCATTGCAAGCCATGCAGTCACCACCGGAAAAAGCAAAATCAATTTTTGAATTTACCGTCACCGATCTGAACGGTAATGAGGTTTCGCTCGACCGCTACCAGGGATCGGTGTGCCTAATCGTGAACTTCTCTACCAAGGATGCCACCTTTGAGAAGGTGTTGAGTCTTCTCACGCCTCTGTTCCGAAAGTATCACAACGACACCCGAAAAGATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAAGAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCAGCACCGATAGCAGCGGTATGATCGGTGAGATTTTCACCGAGATTGAGGTGAACGGCTCGAAAGCCCCCGGACTGTACAAGTATCTGAAGGCGAAAAAACCGGGCAACTGCGGAGGATTTATCAACAGCAACTTTACCATCTTTCTTACCGACCGCCAAGGCGTACCGGTGGAAAGGTTAAATGCTGGAATTCATCCTTACACGCTCGAGGACATGGTCGAGAATTTGTTACGCTAAACTGTGCTGCTAACCGTGTTACTAGAAATAAAGCATAGAACAAATCCAGCTGCCAGCTGC]
consensusID : consensus_6892#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence
[CCGAAAAACAGTTAAACACAGATCAATTCACCGCAAGCCATGCAGTCACCACCGGAAAAAGCAAAATCAATTTTTGAATTTACCGTCACCGATCTGAACGGTAATGAGGTTTCGCTCGACCGCTACCAGGGATCGGTGTGCCTGATCGTGAACTTCTCTACCAAGGATGCCACCTTTGAGAAGGTGTTGAGTCTTCTCACGCCTCTGTTCCGAAAGTATCACAACGACACCCGAAAAGATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAAGAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCAGCGGTATGATCGGTGAGATTTTCACCGAGATTGAGGTGAACGGCTCGAAAGCCCCCGGATTGTACAAGTATCTGAAGGCGAAAAAACCGGGCAATTGCGGAGGATTTATCAACAGCAACTTTACCATCTTTCTTACCGACCGCCAAGGCGTACCGGTGGAAAGGTTAAATGCTGGAATTCATCCTTACACGCTCGAGGACATGGTCGAGAATTTGTTACGCTAAACTGTGCTGCTAACCGTGTTACTAGA]
[+] EMBL BM655304 [CCGAAAAACAGTTAAACACAGATCAATTCACCGCAAGCCATGCAGTCACCACCGGAAAAAGCAAAATCAATTTTTGAATTTACCGTCACCGATCTGAACGGTAATGAGGTTTCGCTCGACCGCTACCAGGGATCGGTGTGCCTGATCGTGAACTTCTCTACCAAGGATGCCACCTTTGAGAAGGTGTTGAGTCTTCTCACGCCTCTGTTCCGAAAGTATCACAACGACACCCGAAAAGATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAAGAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCAGCGGTATGATCGGTGAGATTTTCACCGAGATTGAGGTGAACGGCTCGAAAGCCCCCGGATTGTACAAGTATCTGAAGGCGAAAAAACCGGGCAATTGCGGAGGATTTATCAACAGCAACTTTACCATCTTTCTTACCGACCGCCAAGGCGTACCGGTGGAAAGGTTAAATGCTGGAATTCATCCTTACACGCTCGAGGACATGGTCGAGAATTTGTTACGCTAAACTGTGCTGCTAACCGTGTTACTAGA]
consensusID : consensus_6892#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence
[AGTTGGTAAGAGTGGTTTTGGCTGGGTTAAAAATTCTTCAAAAACAGTTAAACACAGATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAAGAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCAGCACCGATAGCAGCGGTATGATCGGTGAGATTTTCACCGAGATTGAGGTAAGAACTAGCATCCGATCCGTACTTGGCATCCGCGAGAGGGTAGCAGCGATAGATATCAAATAAGGAAGAGCATACCGTACGCATGCACCGGTGGTTGGACGATGAAGCCCCTCCACCGTTTGGTGGGCAGTGTTCTTGGGGTGGAGAGATTTTCTCACAGCGATCGTTTCACGCATCCTTATGTGCGGATAGATGCGATTTTGTTGTCGCCATACTATCATCAAGCTTTGAACCGCTGAGCGTTCGACGATTATCGTCGCACGCGCTTTTCATCTTAATTGATCTGGGTCACATAGCTTCATT]
[+] EMBL BX606570 [AGTTGGTAAGAGTGGTTTTGGCTGGGTTAAAAATTCTTCAAAAACAGTTAAACACAGATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAAGAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCAGCACCGATAGCAGCGGTATGATCGGTGAGATTTTCACCGAGATTGAGGTAAGAACTAGCATCCGATCCGTACTTGGCATCCGCGAGAGGGTAGCAGCGATAGATATCAAATAAGGAAGAGCATACCGTACGCATGCACCGGTGGTTGGACGATGAAGCCCCTCCACCGTTTGGTGGGCAGTGTTCTTGGGGTGGAGAGATTTTCTCACAGCGATCGTTTCACGCATCCTTATGTGCGGATAGATGCGATTTTGTTGTCGCCATACTATCATCAAGCTTTGAACCGCTGAGCGTTCGACGATTATCGTCGCACGCGCTTTTCATCTTAATTGATCTGGGTCACATAGCTTCATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6892#1 CCTACTGGAGTACAGCGCGAATTGTTAGCACGAGTAGATTAGTTGGTAAGAGTGGTTTTG 60
consensus_6892#2 ------------------------------------------------------------
consensus_6892#0 ---------------------------------GTGGTTTTGACTGGGTTAAAAATTCTT 27
consensus_6892#3 ------------------------------------------------------------
consensus_6892#1 GCTGGGTTAAAAATTCTTCAAAAACAGTTAAACACAGATCAATTCATTGCAAGCCATGCA 120
consensus_6892#2 ----------------CCGAAAAACAGTTAAACACAGATCAATTCACCGCAAGCCATGCA 44
consensus_6892#0 CAAAAACACAGTTAAACTTAACTTCAGTTAAACACAGATCAATTCACCTCAAGCCATGCA 87
consensus_6892#3 ------------------------------------------------------------
consensus_6892#1 GTCACCACCGGAAAAAGCAAAATCAATTTTTGAATTTACCGTCACCGATCTGAACGGTAA 180
consensus_6892#2 GTCACCACCGGAAAAAGCAAAATCAATTTTTGAATTTACCGTCACCGATCTGAACGGTAA 104
consensus_6892#0 GTCACCACCGGAAAAAGCAAAATCAATTTTTGAATTTACCGTCACCGATCTGAACGGTAA 147
consensus_6892#3 ------------------------------------------------------------
consensus_6892#1 TGAGGTTTCGCTCGACCGCTACCAGGGATCGGTGTGCCTAATCGTGAACTTCTCTACCAA 240
consensus_6892#2 TGAGGTTTCGCTCGACCGCTACCAGGGATCGGTGTGCCTGATCGTGAACTTCTCTACCAA 164
consensus_6892#0 TGAGGTTTCGCTCGACCGCTACCAGGGATCGGTGTGCCTGATCGTGAACTTCTCTACCAA 207
consensus_6892#3 ------------------------------------------------------------
consensus_6892#1 GGATGCCACCTTTGAGAAGGTGTTGAGTCTTCTCACGCCTCTGTTCCGAAAGTATCACAA 300
consensus_6892#2 GGATGCCACCTTTGAGAAGGTGTTGAGTCTTCTCACGCCTCTGTTCCGAAAGTATCACAA 224
consensus_6892#0 GGATGCCACCTTTGAGAAGGTGTTGAGTCTTCTCACGCCTCTGTTCCGAAAGTATCACAA 267
consensus_6892#3 -----------------AGTTGGTAAGAGTGGTTTTGGCTGGGTT--AAAAATTCTTCAA 41
** ** * ** * * * ** *** *** * ***
consensus_6892#1 CGACACCCGAAAA--GATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAA 358
consensus_6892#2 CGACACCCGAAAA--GATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAA 282
consensus_6892#0 CGACACCCGAAAA--GATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAA 325
consensus_6892#3 AAACAGTTAAACACAGATTTGAACGTCCTCTTCTTCCCATGCTTCCAATTCGGCTCCAAA 101
*** ** * *********************************************
consensus_6892#1 GAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCAGCACCGATAGCAGCGGTATGATC 418
consensus_6892#2 GAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCAGC------------GGTATGATC 330
consensus_6892#0 GAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCAGCACCGATAGCAGCGGTATGATC 385
consensus_6892#3 GAATCGCCGGACGAAATCGTACAGCGCTTCGAGAGCAGCACCGATAGCAGCGGTATGATC 161
*************************************** *********
consensus_6892#1 GGTGAGATTTTCACCGAGATTGAGGTGAA---CGGCTCGAAAGCC---CCCGGACTGTAC 472
consensus_6892#2 GGTGAGATTTTCACCGAGATTGAGGTGAA---CGGCTCGAAAGCC---CCCGGATTGTAC 384
consensus_6892#0 GGTGAGATTTTCACCGAGATTGAGGTGAA---CGGCTCGAAAGCC---CCCGGACTGTAC 439
consensus_6892#3 GGTGAGATTTTCACCGAGATTGAGGTAAGAACTAGCATCCGATCCGTACTTGGCATCCGC 221
************************** * ** * ** * ** * *
consensus_6892#1 AAGTATCTGAAGGCGAAAAA-ACCGGGCAACTGCGGA------GGATTTAT-CAACAGCA 524
consensus_6892#2 AAGTATCTGAAGGCGAAAAA-ACCGGGCAATTGCGGA------GGATTTAT-CAACAGCA 436
consensus_6892#0 AAGTATCTGAAGGCGAAAAA-ACCGGGCAACTGCGGA------GGATTTAT-CAACAGCA 491
consensus_6892#3 GAGAGGGTAGCAGCGATAGATATCAAATAAGGAAGAGCATACCGTACGCATGCACCGGTG 281
** * **** * * * * ** * * * ** ** * *
consensus_6892#1 ACTTTACCAT----CTTTCTTACCGACCGCCAAGGCGTACC-----GGTGGAAAGGTTAA 575
consensus_6892#2 ACTTTACCAT----CTTTCTTACCGACCGCCAAGGCGTACC-----GGTGGAAAGGTTAA 487
consensus_6892#0 ACTTTACCAT----CTTTCTTACCGACCGCCAAGGCGTACC-----GGTGGAAAGGTTAA 542
consensus_6892#3 GTTGGACGATGAAGCCCCTCCACCGTTTGGTGGGCAGTGTTCTTGGGGTGGAGAGATTTT 341
* ** ** * **** * * ** ****** ** **
consensus_6892#1 AT-GCTGGAATTCATCCTTACACGCTCGAGGAC--ATGGTCGAGAATTTGTTA-CGCTAA 631
consensus_6892#2 AT-GCTGGAATTCATCCTTACACGCTCGAGGAC--ATGGTCGAGAATTTGTTA-CGCTAA 543
consensus_6892#0 AT-GCTGGAATTCATCCTTACACGCTCGAGGAC--ATGGTCGAGAATTTGTTA-CGCTAA 598
consensus_6892#3 CTCACAGCGATCGTTTCACGCATCCTTATGTGCGGATAGATGCGATTTTGTTGTCGCCAT 401
* * * ** * * ** ** * * ** * * ** ****** *** *
consensus_6892#1 ACTGTGCTGCTAACCGTGTTACTAGAAATAAAGCATAGAACAAATCCAGCTGCCAGCTGC 691
consensus_6892#2 ACTGTGCTGCTAACCGTGTTACTAGA---------------------------------- 569
consensus_6892#0 ACTGTGCTGCTAACCGTGTTACTAGAAATAAAGCATAGAACAAATCCAGCTGCCAGCTGC 658
consensus_6892#3 ACTATC------ATCAAGCTTTGAACCGCTGAGCGTTCGACGATTATCGTCGCACGC-GC 454
*** * * * * * *
consensus_6892#1 ------------------------------------------------------------
consensus_6892#2 ------------------------------------------------------------
consensus_6892#0 GGGCTGTTTAACTTTGTGTTAGTTTTACAGCGTTTCTGTTTTTGTTTGTATGCCATAACG 718
consensus_6892#3 TTTTCATCTTAATTGATCTGGGTCACATAGCTTCATT----------------------- 491
consensus_6892#1 ------------------------------------------------------------
consensus_6892#2 ------------------------------------------------------------
consensus_6892#0 AGTCGTTAACTTCATTCACAAAATGTGTTGAGCATGAAACATTCATATATTGNCAACGCA 778
consensus_6892#3 ------------------------------------------------------------
consensus_6892#1 ------------------------------
consensus_6892#2 ------------------------------
consensus_6892#0 TCATTGAAGCTTTCGCGATTAAAGNTTAAT 808
consensus_6892#3 ------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||