cluster # 6901

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Anopheles gambiae
cluster # 6901 cluster # 6901 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6901#0 length = 1186 sequences # 4

consensus_6901#1 length = 495 sequences # 1
consensus_6901#2 length = 353 sequences # 1

consensusID : consensus_6901#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1186
fasta sequence

                              [ATTAAACTTTAAGCTGTACTGCGCCTCACAACATTTAGACCTAAGTTTTATGCGAAAGCACAACTGCACACACGGGGGGCCACCCCTACCAGTGTGTTGTACTCGTTTTATTTAAAAGCTTGAAACATTGAAAAGGCAATATCGAATACAGAAAAGCACAAATAATTCAATTTTGTTTTTGTGATTGAGCCACCTATATACATATAATTGTGCTGCTGCAGTTTATGTATGTGTGCTTTTCTTGTAGCAGTTTGGACGCGGTTTGTGCTTGTTTTTTTTCTTGTCGAGATATTTAGGGTTAAGTTGTTATGATTATACTAGAGAATTGAGAAGCCCCGAAGCTTATACACTCGTGTCTGTAAAAGACAAAGCGCTAGCGCAAACTATACATACATGTATGCATATATAAATATTTGTGGAGAATTAGAACAGTTCGTGTAACGCATCTTATCAAACTGTAGCACAAACTCCTCTCCTCTCC-GATGTGTGTGTGTGTTTTTTTTTATCGTCCTGTATATAGTAGCGGTAGAGGAATGTACCGAAAGGCGAATGAAACAAGAGATAAACT--TCCA-C-CCCATCTTGCGGTTGATTGTGTCCTGCAGTGAAGTGAAACAGAAGGCTACAGACCCACGTTTTAAGTTGGAAGATTGATAGCATGTGTTTTAACATTTTCAGAGGTGTTTAAACACGAGATGAAGAAAAATTGCTGCAAAGGCAAACAAAGTTCCGGGGCACGAAATCGAATTGGCTTTCGAGCTTTGACTACATAGATTGCCAAATATTTACAATCTTCTGCGTGTGTTTCATACTCTCCAAATTTAACACTACATGGAAACAGTACAAGAACATTTGTGAACCACAAACACAAAACGATAACATTCGATGGCTACTAAATATTGGATCGCTGGGCGGGAATAGTCGTCCGCTGGTGCGAACGAAGTTGTAGGTAGTCGATGTGTAGCCAAAAATTGGCATTCTTCAAGCTCATTTAGTACGATCGCACAAAATTAATCGTGGAGGGAATGCATCTATGGATGGACGATGTGTGTAGTAAGGTATGCNAATGCTAGTTAGGAAGTGACAATTGGGATTGTATTTGCTGCACTAGTGCGTGTGTGTGTGTTTGTCCATTGTATCGAAGGAGCCAACCACACCAACCATAATAGAATTTCATCGATAAAAGTAA]

[+] EMBL BX624263             [ATTAAACTTTAAGCTGTACTGCGCCTCACAACATTTAGACCTAAGTTTTATGCGAAAGCACAACTGCACACACGGGGGGCCACCCCTACCAGTGTGTTGTACTCGTTTTATTTAAAAGCTTGAAACATTGAAAAGGCAATATCGAATACAGAAAAGCACAAATAATTCAATTTTGTTTTTGTGATTGAGCCACCTATATACATATAATTGTGCTGCTGCAGTTTATGTATGTGTGCTTTTCTTGTAGCAGTTTGGACGCGGTTTGTGCTTGTTTTTTTTCTTGTCGAGATATTTAGGGTTAAGTTGTTATGATTATACTAGAGAATTGAGAAGCCCCGAAGCTTATACACTCGTGTCTGTAAAAGACAAAGCGCTAGCGCAAACTATACATACATGTATGCATATATAAATATTTGTGGAGAATTAGAACAGTTCGTGTANNGCATCTTATCAAACTGTAGCACAAACTCCTCTCCTCTCCGGATGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BX622735             [                                                                                                                                                                                                                                                                                                                                                                                              ACTATACATACATGTATGCATATATAAATATTTGTGGAGAATTAGAACAGTTCGTGTAACGCATCTTATCAAACTGTAGCACAAACTCCTCTCCTCTCC GATGTGTGTGTGTGTTTTTTTTTATCGTCCTGTATATAGTAGCGGTAGAGGAATGTACCGAAAGGCGAATGAAACAAGAGATAAACT  TCCA C CCCATCTTGCGGTTGATTGTGTCCTGCAGTGAAGTGAAACAGAAGGCTACAGACCCACGTTTTAAGTTGGAAGATTGATAGCATGTGTTTTAACATTTTCAGAGGTGTTTAAACACGAGATGAAGAAAAATTGCTGCAAAGGCAAACAAAGTTCCGGGGCACGAAATCGAATTGGCTTTCGAGCTTTGACTACATAGATTGCCAAATATTTACAATCTTCTGCGTGTGTTTCATACTCTCCAAATTTAACACTACATGGAAACAGTACAAGAACATTTGTGAACCACAAACACAAAACGATAACATTCGATGGCTACTAAATATTGGATCGCTGGGCGGGAATAGTCGTCCGCTGGTGCGAACGAAGTTGTAGGTAGTCGATGTGTAGCCAAAAATTGGCATTCTTCAAGCTCATTTAGTACGATCGCACAAAATTAATCGTGGAGGGAATGCATCTATGGATGGACGATGTGTGTAGTAAGGTATGCNAATGCTAGTTAGGAAGTGACAATTGGGATTGTATTTGCTGCACT                                                                                ]
[+] EMBL BX612496             [                                                                                                                                                                                                                                                                                                                                                                                                                                     AATTAGAACAGTTCGGGTAACGCATCTTATCAAACTGTAGCACAAACTCCTCTCCTCTCC GATGTGTGTGTGTGTTTTTTTTTATCGTCCTGTATATAGTAGCGGTAGAGGAATGTACCGAAAGGGGAATGAAACAAGAGATAAACTTGTTAATCTCCCGTCTCGCGGTAGATTGTGTCCTGCAGTGAAGTGAAACAGAAGGCTACAGACCCACGTCAAAAGTTGGAAGATTGATAGCATGTGTTTTAACATTTTCAGAGGTGTTTAAACACGAGATGAAGAAAAATTGCTGCAAAGGCAAACAAAGTTCCGGGGCACGAAATCGAATTGGCTTTCGAGCTTTGACTACATAGATTGCCAAATATTTACAATCTTCTGCGTGTGTTTCATACTCTCCAAATTTAACACTACATGGAAACAGTACAAGAACATTTGTGAACCACAAACACAAAACGATAACATTCGATGGCTACTAAATATTGGATCGCTGGGCGGGAATAGTCGTCCGCTGGTGCGAACGAAGTTGTAGGTAGTCGATGTGTAGCCAAAAATTGGCATTCTTCAAGCTCATTTAGTACGATCGCACAAAATTAATCGTGGAGGGAATGCATCTATGGATGGACGATGTGTGTAGTAAGGTATGCAAATGCTAGTTAGGAAGTGAGAATT GGATTGTATTTGCTACACTAGTGCGTGTGTGTGTGTTTGTCCATTGTATCGAAGGAGCCAACCACACCAACCATAATAGAATTTCATCGATAAAAGTAA]
[+] EMBL BX617868             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CAATCTTCTGCGTGTGTTTCATACTCTCCAAATTTAACACTACATGGAAACAGTACAAGAACATTTGTGAACCACAAACACAAAACGAAAACATTCGATGGCTACTAAATATTGGATCGCTGGGCGGGAATAGTCGTCCGCTGGTGCGAACGAAGTTGTAGGTAGTCG                                                                                                                                                                                                                                         ]




>consensus_6901#0
ATTAAACTTTAAGCTGTACTGCGCCTCACAACATTTAGACCTAAGTTTTATGCGAAAGCA
CAACTGCACACACGGGGGGCCACCCCTACCAGTGTGTTGTACTCGTTTTATTTAAAAGCT
TGAAACATTGAAAAGGCAATATCGAATACAGAAAAGCACAAATAATTCAATTTTGTTTTT
GTGATTGAGCCACCTATATACATATAATTGTGCTGCTGCAGTTTATGTATGTGTGCTTTT
CTTGTAGCAGTTTGGACGCGGTTTGTGCTTGTTTTTTTTCTTGTCGAGATATTTAGGGTT
AAGTTGTTATGATTATACTAGAGAATTGAGAAGCCCCGAAGCTTATACACTCGTGTCTGT
AAAAGACAAAGCGCTAGCGCAAACTATACATACATGTATGCATATATAAATATTTGTGGA
GAATTAGAACAGTTCGTGTAACGCATCTTATCAAACTGTAGCACAAACTCCTCTCCTCTC
CGATGTGTGTGTGTGTTTTTTTTTATCGTCCTGTATATAGTAGCGGTAGAGGAATGTACC
GAAAGGCGAATGAAACAAGAGATAAACTTCCACCCCATCTTGCGGTTGATTGTGTCCTGC
AGTGAAGTGAAACAGAAGGCTACAGACCCACGTTTTAAGTTGGAAGATTGATAGCATGTG
TTTTAACATTTTCAGAGGTGTTTAAACACGAGATGAAGAAAAATTGCTGCAAAGGCAAAC
AAAGTTCCGGGGCACGAAATCGAATTGGCTTTCGAGCTTTGACTACATAGATTGCCAAAT
ATTTACAATCTTCTGCGTGTGTTTCATACTCTCCAAATTTAACACTACATGGAAACAGTA
CAAGAACATTTGTGAACCACAAACACAAAACGATAACATTCGATGGCTACTAAATATTGG
ATCGCTGGGCGGGAATAGTCGTCCGCTGGTGCGAACGAAGTTGTAGGTAGTCGATGTGTA
GCCAAAAATTGGCATTCTTCAAGCTCATTTAGTACGATCGCACAAAATTAATCGTGGAGG
GAATGCATCTATGGATGGACGATGTGTGTAGTAAGGTATGCNAATGCTAGTTAGGAAGTG
ACAATTGGGATTGTATTTGCTGCACTAGTGCGTGTGTGTGTGTTTGTCCATTGTATCGAA
GGAGCCAACCACACCAACCATAATAGAATTTCATCGATAAAAGTAA

consensusID : consensus_6901#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 495
fasta sequence

                              [CCGCCCACGCGTCCGGTTTTATTTAAAAGCTTGAAACATTGAAAAGGCAATATCGAATACAGAAAAGCACAAATAATTCAGTTTTGTTTTTGTGATTGAGCCACTTTTATACATTTAATTGTGCTGCTGCAGTTTATGTATGTGTGCTTTTCTTGTAGCAGTTTGGACGCGGTTTGTGCTTGTTTTTTTTCTTGTCGAGATATTTAGGGTTAAGTTGTTATGATTATACTAGAGAATTGAGAAGCCCCGAAGCTTATACACTCGTGTCTGTAAAAGACAAAGCGCTAGCGCAAACTATACATACATGTATGCATATATAAATATTTGTGGAGAATTAGAACAGTTCGTGTAACGCATCTTATCAAACTGTAGCACAAACTCCTCTCCGATGTGTGTGTGTGTTTTTTTTTTATCGTCCTGTATATAGTAGCGGTAGAGGAATGTACCGAAAGGTGAATGAAACAAGAGATAAACTTCCACCCCGTCTTGCGGTTG]

[+] EMBL BM654963             [CCGCCCACGCGTCCGGTTTTATTTAAAAGCTTGAAACATTGAAAAGGCAATATCGAATACAGAAAAGCACAAATAATTCAGTTTTGTTTTTGTGATTGAGCCACTTTTATACATTTAATTGTGCTGCTGCAGTTTATGTATGTGTGCTTTTCTTGTAGCAGTTTGGACGCGGTTTGTGCTTGTTTTTTTTCTTGTCGAGATATTTAGGGTTAAGTTGTTATGATTATACTAGAGAATTGAGAAGCCCCGAAGCTTATACACTCGTGTCTGTAAAAGACAAAGCGCTAGCGCAAACTATACATACATGTATGCATATATAAATATTTGTGGAGAATTAGAACAGTTCGTGTAACGCATCTTATCAAACTGTAGCACAAACTCCTCTCCGATGTGTGTGTGTGTTTTTTTTTTATCGTCCTGTATATAGTAGCGGTAGAGGAATGTACCGAAAGGTGAATGAAACAAGAGATAAACTTCCACCCCGTCTTGCGGTTG]




>consensus_6901#1
CCGCCCACGCGTCCGGTTTTATTTAAAAGCTTGAAACATTGAAAAGGCAATATCGAATAC
AGAAAAGCACAAATAATTCAGTTTTGTTTTTGTGATTGAGCCACTTTTATACATTTAATT
GTGCTGCTGCAGTTTATGTATGTGTGCTTTTCTTGTAGCAGTTTGGACGCGGTTTGTGCT
TGTTTTTTTTCTTGTCGAGATATTTAGGGTTAAGTTGTTATGATTATACTAGAGAATTGA
GAAGCCCCGAAGCTTATACACTCGTGTCTGTAAAAGACAAAGCGCTAGCGCAAACTATAC
ATACATGTATGCATATATAAATATTTGTGGAGAATTAGAACAGTTCGTGTAACGCATCTT
ATCAAACTGTAGCACAAACTCCTCTCCGATGTGTGTGTGTGTTTTTTTTTTATCGTCCTG
TATATAGTAGCGGTAGAGGAATGTACCGAAAGGTGAATGAAACAAGAGATAAACTTCCAC
CCCGTCTTGCGGTTG

consensusID : consensus_6901#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 353
fasta sequence

                              [GGCAAGAATCGCCGACGGTGAANAGAGATTGCAAATATGAAACAAATCGACACGAAATCGAATTGGCTTTCGAGCTTTGACTACATAGATTGCCAAATATTTACAATCTTCTGCGGTGTGTTTCATACTCTCCAAATTTAACACTACATGGAAACAGTACAAGAACATTTGTGAACCACAAACACAAAACGAGTACACATTCGATGGCTACTAACATATTGGATCGCTGGGCGGGAATAGTCGTCCGCCTGGTGCGAACGAAGATTGTCACGTAGTCGACGTGTNGCCCAAAATTCGGGCATTCTTCAAGCTCATTTTAGTACGATCGCACAACAACTCAACTCGCTGGAACG]

[+] EMBL AL696181             [GGCAAGAATCGCCGACGGTGAANAGAGATTGCAAATATGAAACAAATCGACACGAAATCGAATTGGCTTTCGAGCTTTGACTACATAGATTGCCAAATATTTACAATCTTCTGCGGTGTGTTTCATACTCTCCAAATTTAACACTACATGGAAACAGTACAAGAACATTTGTGAACCACAAACACAAAACGAGTACACATTCGATGGCTACTAACATATTGGATCGCTGGGCGGGAATAGTCGTCCGCCTGGTGCGAACGAAGATTGTCACGTAGTCGACGTGTNGCCCAAAATTCGGGCATTCTTCAAGCTCATTTTAGTACGATCGCACAACAACTCAACTCGCTGGAACG]




>consensus_6901#2
GGCAAGAATCGCCGACGGTGAANAGAGATTGCAAATATGAAACAAATCGACACGAAATCG
AATTGGCTTTCGAGCTTTGACTACATAGATTGCCAAATATTTACAATCTTCTGCGGTGTG
TTTCATACTCTCCAAATTTAACACTACATGGAAACAGTACAAGAACATTTGTGAACCACA
AACACAAAACGAGTACACATTCGATGGCTACTAACATATTGGATCGCTGGGCGGGAATAG
TCGTCCGCCTGGTGCGAACGAAGATTGTCACGTAGTCGACGTGTNGCCCAAAATTCGGGC
ATTCTTCAAGCTCATTTTAGTACGATCGCACAACAACTCAACTCGCTGGAACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6901#0      ATTAAACTTTAAGCTGTACTGCGCCTCACAACATTTAGACCTAAGTTTTATGCGAAAGCA 60
consensus_6901#1      ------------------------------------------------------------
consensus_6901#2      ------------------------------------------------------------
                                                                                  

consensus_6901#0      CAACTGCACACACGGGGGGCCACCCCTACCAGTGTGTTGTACTCGTTTTATTTAAAAGCT 120
consensus_6901#1      -------------------------CCGCCCACGCGT----CCGGTTTTATTTAAAAGCT 31
consensus_6901#2      --------------------------------------------------GGCAAGAATC 10
                                                                           ** *   

consensus_6901#0      TGAAACATTGAAAAGGCAATATCGA-ATACAGAAAAGCACAAATAATTCAATTTTGTTTT 179
consensus_6901#1      TGAAACATTGAAAAGGCAATATCGA-ATACAGAAAAGCACAAATAATTCAGTTTTGTTTT 90
consensus_6901#2      GCCGACGGTGAANAGAGATTGCAAATATGAAACAAATCGACACGAAATCGAATTGGCTTT 70
                          **  **** **  * *    * **  *  *** *   *  ** **   ** * ***

consensus_6901#0      TGTGATTGAGCCACCTATATA--CATATAATTGTG--CTGCTGCAGTTTATGT-ATGTGT 234
consensus_6901#1      TGTGATTGAGCCACTTTTATA--CATTTAATTGTG--CTGCTGCAGTTTATGT-ATGTGT 145
consensus_6901#2      CGAGCTTTGACTACATAGATTGCCAAATATTTACAATCTTCTGCGGTGTGTTTCATACTC 130
                       * * **   * ** *  **   **  ** **     ** **** ** * * * **    

consensus_6901#0      GCTTTTCTTGTAGCAGTTTGGACGCGGTTTGTGCTTGTTTTTTTTCTTGTCGAGATATTT 294
consensus_6901#1      GCTTTTCTTGTAGCAGTTTGGACGCGGTTTGTGCTTGTTTTTTTTCTTGTCGAGATATTT 205
consensus_6901#2      TCCAAATTTAACACTACATGGAAACAGTACAAGAACATTTGTGAACC-ACAAACACAAAA 189
                       *     **    *    ****  * **    *    *** *   *      * * *   

consensus_6901#0      AGGGTTAAGTTGTTATGATTATACTAGAGAATTGAGAAGCCCCGAAGCTTATACACTCGT 354
consensus_6901#1      AGGGTTAAGTTGTTATGATTATACTAGAGAATTGAGAAGCCCCGAAGCTTATACACTCGT 265
consensus_6901#2      CGAGTACACATTCGATGGCT--ACTAACATATTGGATCGCTGGGCGGGA-ATAGTCGTCC 246
                       * **  *  *   ***  *  ****    ****    **   *  *   ***  *    

consensus_6901#0      GTCTGTAAAAGACAAAGCGCTAGCGCAAACTATACATACATGTATGCATATATAAATATT 414
consensus_6901#1      GTCTGTAAAAGACAAAGCGCTAGCGCAAACTATACATACATGTATGCATATATAAATATT 325
consensus_6901#2      GCCTGGTGCGAACGAAG-ATTGTCACGTAGTCGACGTGTNGCCCAAAATTCGGGCATTCT 305
                      * ***      ** ***   *  * *  * *  ** *          **      **  *

consensus_6901#0      TGTGGAGAATTAGAACA-GTTCGTGTAACGCATCTTATCAAACTGTAGCACAAACTCCTC 473
consensus_6901#1      TGTGGAGAATTAGAACA-GTTCGTGTAACGCATCTTATCAAACTGTAGCACAAACTCCTC 384
consensus_6901#2      TCAAGCTCATTTTAGTACGATCGCACAAC--AACTCAACTCGCTGGAACG---------- 353
                      *   *   ***  *  * * ***   ***  * ** * *   *** * *           

consensus_6901#0      TCCTCTCCGATGTGTGTGTGTGTTTTTTTTT-ATCGTCCTGTATATAGTAGCGGTAGAGG 532
consensus_6901#1      TCC-----GATGTGTGTGTGTGTTTTTTTTTTATCGTCCTGTATATAGTAGCGGTAGAGG 439
consensus_6901#2      ------------------------------------------------------------
                                                                                  

consensus_6901#0      AATGTACCGAAAGGCGAATGAAACAAGAGATAAACTTCCACCCCATCTTGCGGTTGATTG 592
consensus_6901#1      AATGTACCGAAAGGTGAATGAAACAAGAGATAAACTTCCACCCCGTCTTGCGGTTG---- 495
consensus_6901#2      ------------------------------------------------------------
                                                                                  

consensus_6901#0      TGTCCTGCAGTGAAGTGAAACAGAAGGCTACAGACCCACGTTTTAAGTTGGAAGATTGAT 652
consensus_6901#1      ------------------------------------------------------------
consensus_6901#2      ------------------------------------------------------------
                                                                                  

consensus_6901#0      AGCATGTGTTTTAACATTTTCAGAGGTGTTTAAACACGAGATGAAGAAAAATTGCTGCAA 712
consensus_6901#1      ------------------------------------------------------------
consensus_6901#2      ------------------------------------------------------------
                                                                                  

consensus_6901#0      AGGCAAACAAAGTTCCGGGGCACGAAATCGAATTGGCTTTCGAGCTTTGACTACATAGAT 772
consensus_6901#1      ------------------------------------------------------------
consensus_6901#2      ------------------------------------------------------------
                                                                                  

consensus_6901#0      TGCCAAATATTTACAATCTTCTGCGTGTGTTTCATACTCTCCAAATTTAACACTACATGG 832
consensus_6901#1      ------------------------------------------------------------
consensus_6901#2      ------------------------------------------------------------
                                                                                  

consensus_6901#0      AAACAGTACAAGAACATTTGTGAACCACAAACACAAAACGATAACATTCGATGGCTACTA 892
consensus_6901#1      ------------------------------------------------------------
consensus_6901#2      ------------------------------------------------------------
                                                                                  

consensus_6901#0      AATATTGGATCGCTGGGCGGGAATAGTCGTCCGCTGGTGCGAACGAAGTTGTAGGTAGTC 952
consensus_6901#1      ------------------------------------------------------------
consensus_6901#2      ------------------------------------------------------------
                                                                                  

consensus_6901#0      GATGTGTAGCCAAAAATTGGCATTCTTCAAGCTCATTTAGTACGATCGCACAAAATTAAT 1012
consensus_6901#1      ------------------------------------------------------------
consensus_6901#2      ------------------------------------------------------------
                                                                                  

consensus_6901#0      CGTGGAGGGAATGCATCTATGGATGGACGATGTGTGTAGTAAGGTATGCNAATGCTAGTT 1072
consensus_6901#1      ------------------------------------------------------------
consensus_6901#2      ------------------------------------------------------------
                                                                                  

consensus_6901#0      AGGAAGTGACAATTGGGATTGTATTTGCTGCACTAGTGCGTGTGTGTGTGTTTGTCCATT 1132
consensus_6901#1      ------------------------------------------------------------
consensus_6901#2      ------------------------------------------------------------
                                                                                  

consensus_6901#0      GTATCGAAGGAGCCAACCACACCAACCATAATAGAATTTCATCGATAAAAGTAA 1186
consensus_6901#1      ------------------------------------------------------
consensus_6901#2      ------------------------------------------------------