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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6917#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1223 fasta sequence
[GGAGGTAAGTGTACTGTGGTGCGTCTCGGTTTGTGCACACCACCAAAGTGCATTCTAATGAGGGACAATCGTTGGGGCCGGGCAGGTGGCAATTGTGAAAAATCACGACCCACCGTTTCTGGNAATTTCCATGTCCAACGAGATGATAAGTGTTACGTGCCGCACGTCAGCAGTGTGCGTCGGAAGTGATGGCTTCCAGGCGGGATCGCGAAGTCGTCGCTTCCTGTTTTGCCGGGCCGTGTGCTGCGAGCCGAGAATAGATCGTGGATTGTGTAATTTACATCATGTGCTGGTGCCCGTATTCAGGTGCAGATCACTTGATCGTGTGTCAGCATAAACTCNCCGTTGCGAAATCATATCGGACGGAGCGGGAGAGATCGGGAACGGGGACGTTCATTGGGGGGGTAATCACGAGGATGGACATTTGTCTAGTGTGGTTGTACCGATGAAAACAACCAGTGGCTGGGGTGTCAAACCCACATGCAAGTTTGATTACAGCGTTCGGTACGATCGTGCTCCGTTCGCTGGCACGATGAAGCGCACTTTCGACTACCATCCGCCAACGATTTGCTACGACAAGCCTGCGATGGCCGTCGTCTCCAAAGACGAGTACGAATCCCGTCGGATTCGGGCGCTGGCCGGCACCCGCGTGCTGGAGCTGATCGTGCCGAAACGATCGGCTCGCACGTGGACGATGCAGGCCGGTGATGTGTGCCGCGTGTCCCTTCCGGAAGGGTCGCAGGTCGGCGATTTGAATCTGTGGAACCTGGAGCACCCCCGGCAGGAACGGTTCTATTCGGGCAAAACGCGCCAGATCCATTCGACGCACCTGAAAACGTACGATCGACTGTGGAGCTGCTTTCCGTACCTGCGGCCGATGGCCACGTTAGTGCGGGATTCGCTCGCAGACTACGGCATCGATCGGGATGGCGGATCGCTGCACGATGTGGTCGGGACGAGGTGTGATGACTACATCTACAAGCTTATTACGGGGCAGGATCGGTTCGGCAGCTGCCACAGCTACCTGACCGAGGCCGTGAAGGAGCACGGTTTGGGCGAGGAGGATGTGCACGACACGTGGAACATTTTCATGTGCACCGGGTTTACGCAGGACACTCAGCAGTACTTTTGTAAGCCAAGTCCCGCTCGGAAAGGGGACTGTATTGAGTTTTTGGCGGAAATGAATCTGCTCGTTGCGCTCAGCGCTTGNCCGCAGGGTGATG]
[+] EMBL BX628878 [GGAGGTAAGTGTACTGTGGTGCGTCTCGGTTTGTGCACACCACCAAAGTGCATTCTAATGAGGGACAATCGTTGGGGCCGGGCAGGTGGCAATTGTGAAAAATCACGACCCACCGTTTCTGGNAATTTCCATGTCCAACGAGATGATAAGTGTTACGTGCCGCACGTCAGCAGTGTGCGTCGGAAGTGATGGCTTCCAGGCGGGATCGCGAAGTCGTCGCTTCCTGTTTTGCCGGGCCGTGTGCTGCGAGCCGAGAATAGATCGTGGATTGTGTAATTTACATCATGTGCTGGTGCCCGTATTCAGGTGCAGATCACTTGATCGTGTGTCAGCATAAACTCNCCGTTGCGAAATCATATCGGACGGAGCGGGAGAGATCGGGAACGGGGACGTTCATTGGGGGGGTAATCACGAGGATGGACATTTGTCTAGTGTGGTTGTACCGATGAAAACAACCAGTGGCTGGGGTGTCAAACCCACATGCAAGTTTGATTACAGCGTTCGGTACGATCGTGCTCCGTTCGCTGGCACGATGAAGCGCACTTTCGATTACCNTCCGCCAACGATTTGCTACGACAAGCCAGCGATGGCCGTCGTCTCCAAAGACGAGTACGAATCCCGTCGGATT ]
[+] EMBL BX621526 [ ACGATCGTGCTCCGTTCGCTGGCACGATGAAGCGCACTTTCGACTACCATCCGCCAACGATTTGCTACGACAAGCCTGCGATGGCCGTCGTCTCCAAAGACGAGTACGAATCCCGTCGGATTCGGGCGCTGGCCGGCACCCGCGTGCTGGAGCTGATCGTGCCGAAACGATCGGCTCGCACGTGGACGATGCAGGCCGGTGATGTGTGCCGCGTGTCCCTTCCGGAAGGGTCGCAGGTCGGCGATTTGAATCTGTGGAACCTGGAGCACCCCCGGCAGGAACGGTTCTATTCGGGCAAAACGCGCCAGATCCATTCGACGCACCTGAAAACGTACGATCGACTGTGGAGCTGCTTTCCGTACCTGCGGCCGATGGCCACGTTAGTGCGGGATTCGCTCGCAGACTACGGCATCGATCGGGATGGCGGATCGCTGCACGATGTGGTCGGGACGAGGTGTGATGACTACATCTACAAGCTTATTACGGGGCAGGATCGGTTCGGCAGCTGCCACAGCTACCTGACCGAGGCCGTGAAGGAGCACGGTTTGGGCGAGGAGGATGTGCACGACACGTGGAACATTTTCATGTGCACCGGGTTTACGCAGGACACTCAGCAGTACTTTTGTAAGCCAAGTCCCGCTCGGAAAGGGGACTGTATTGAGTTTTTGGCGGAAATGAATCTGCTCGTTGCGCTCAGCGCTTGNCCGCAGGGTGATG]
[+] EMBL BM607505 [ ccgGTTCGCTGGCACGATGAAGCGCACTTTCGACTACCATCCGCCAACGATTTGCTACGACAAGCCTGCGATGGCCGTCGTCTCCAAATACGAGTACGAATCCCGTCGGATTCGGGCGCTGGCCGGCACCCGCGTGCTGGAGCTGATCGTGCCGAAGCGATCGGCCCGCACGTGGACGATGCAGGCCGGCGACGTGTGCCGCGTGTCCCTTCCGGAAGGGTCGCAGGTCGGCGATTTGAATCTGTGGAACCTGGAGCACCCCCGGCAGGAACGGTTATATTCGGGCAAAACGCGCCAGATCCATTCGACGCACCTGAAAACGTACGATCGGCTGTGGAGCTGCTTTCCGTACCTGCGGCCGATGGCCACGTTTGTGCGGGATTCGCTCGCAGACTACGGCATCGATCGGGATGGCGGATCGCTGCACGATGTGGTCGGGACGAGGTGTGATGACTACATCTACAAGCTTATTACGGGGCAGGATCGGTTCGGCAGCTGCCACAGCTACCTGACCGAGGCCGTGAAGGAACACGGTTTGAGCGAGGAGGATGTGCACGACACGTGGAACATTTTCATGTGCACCGGGTTTACGCGGGACACTCAGCAGTACTTTTGTAAGCCAAGTCCCGCTCGGAAAGGTGACTGCATCGAGTTT ]
consensusID : consensus_6917#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 832 fasta sequence
[AGGCAGATCGGCACGNGGCGGAGTTGATCACTTGACACAACCGTTGGTTTGTAACAACCGGGCGGCATCGCACCGGCATCACGAAACTAGCTT-TCATTAGTGGGAAGTTGCACCTCGTCCGGACCCAAACCGTTGGCTTCCACCATACGCTGGCCACTAATGGCACTGCTGATTATCGTTCAATTTGCACCATTTAGTAGCGTCGCGAGTAAAGCGAACGGTTTTGGGAGTTTGATTACAGCGTTCGGTACGATCGTGCTCCGTTCGCTGGCACGATGAAGCGCACTTTCGATTACCATCCGCCAACGATTTGCTACGACAAGCCAGCGATGGCCGTCGTCTCCAAAGACGAGTACGAATCCCGTCGGATTCGGGCGCTGGCCGGCACCCGCGTGCTGGAGCTGATCGTGCCGAAACGATCGGCCCGCACGTGGACGATGCAGGCCGGCGATGTGTGCCGCGTGTCCCTTCCCGAAGGGTCGCAGGTCGGCGATTTGAATCTGTGGAACCTGGAGCACCCCCGGCAGGAACGGTTCTTTTACGGGCAAAACGCGCCAGATCCATTCGACGCACCTGAAAACGTACGATCGGCTGTGGAGCTGCTTTCCCGGTAACCTGCGGCCGNATGGGCCACNGTATAGNGCCGGGNATTCCGCTCGCAAGACTACGGCATCGATCGGGATTGGCGGNATTCGCTGGCACGATGTGGGGNCGGGGAACGAAAGGTGGTGCATGACTTACATTCTAACCAAGGCTTATTAACNGGGGCAAGGANCCGGGTTCGGGCAAAAGTTTGGCCACAGGTTAACTTGGACCGAAGGCCCGTTGAAGG]
[+] EMBL BX467187 [AGGCAGATCGGCACGNGGCGGAGTTGATCACTTGACACAACCGTTGGTTTGTAACAACCGGGCGGCATCGCACCGGCATCACGAAACTAGCTT TCATTAGTGGGAAGTTGCACCTCGTCCGGACCCAAACCGTTGGCTTCCACCATACGCTGGCCACTAATGGCACTGCTGATTATCGTTCAATTTGCACCATTTAGTAGCGTCGCGAGTAAAGCGAACGGTTTTGGGAGTTTGATTACAGCGTTCGGTACGATCGTGCTCCGTTCGCTGGCACGATGAAGCGCACTTTCGATTACCATCCGCCAACGATTTGCTACGACAAGCCAGCGATGGCCGTCGTCTCCAAAGACGAGTACGAATCCCGTCGGATTCGGGCGCTGGCCGGCACCCGCGTGCTGGAGCTGATCGTGCCGAAACGATCGGCCCGCACGTGGACGATGCAGGCCGGCGATGTGTGCCGCGTGTCCCTTCCCGAAGGGTCGCAGGTCGGCGATTTGAATCTGTGGAACCTGGAGCACCCCCGGCAGGAACGGTTCTTTTACGGGCAAAACGCGCCAGATCCATTCGACGCACCTGAAAACGTACGATCGGCTGTGGAGCTGCTTTCCCGGTAACCTGCGGCCGNATGGGCCACNGTATAGNGCCGGGNATTCCGCTCGCAAGACTACGGCATCGATCGGGATTGGCGGNATTCGCTGGCACGATGTGGGGNCGGGGAACGAAAGGTGGTGCATGACTTACATTCTAACCAAGGCTTATTAACNGGGGCAAGGANCCGGGTTCGGGCAAAAGTTTGGCCACAGGTTAACTTGGACCGAAGGCCCGTTGAAGG]
[+] EMBL BX624359 [ TCGCACCGGCATCACGAAACTAGCTTATCATTAGTGGGAAGTTGCACCTCGTCCGGACCCAAACCGTTGGCTTCCACCATACGCTGGCCACTAATGGCACTGCTGATTATCGTTCAATTTGCACCATTTAGTAGCGTCGCGAGTAAAGCGAACGGTTTTGGGAGTNTG ]
consensusID : consensus_6917#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence
[GCAAGAATCGCACGAGGTGNGNATTACGCGGGACACTCAGCAGTACTTTTGTAAGCCAAGTCCCGCTCGGAAAGGGGACTGCATTGAGTTTTTGGCGGAAATGAATCTGCTCGTTGCGCTCAGCGCTTGCCCGCAAGGTGATGTTTCGATACAGGTCGGCCAGAAAGTGCCGGACGAAAAGTGTTTCCCATTGCTGGTGGAGGTTTAATCGAGCGAATTGATGCGCTGTGCGATAGAATCAAGACCATAACACATTAATACAGCGCTTTATGAACATTAAATGTTTGCNAACGCTATTTATTCAGCCATTGTTTGGCTGTTAAAACTTGGTATGGGTTGNGGTCTCTTTGATCGTTTACGTGCCGATGTGACACACATGTGCTCAAGATTCTGCATCAGATTAACGCTCAATTTGTAACACTTCGAAAACGATACACCTTGGAACGTTACGCAGGCCAGACTATATCCAGGCAGGACCTAAAACTCGGCAACGCGTCCAAATCCGAGTGCCGAATTTCCACTT]
[+] EMBL AL696693 [GCAAGAATCGCACGAGGTGNGNATTACGCGGGACACTCAGCAGTACTTTTGTAAGCCAAGTCCCGCTCGGAAAGGGGACTGCATTGAGTTTTTGGCGGAAATGAATCTGCTCGTTGCGCTCAGCGCTTGCCCGCAAGGTGATGTTTCGATACAGGTCGGCCAGAAAGTGCCGGACGAAAAGTGTTTCCCATTGCTGGTGGAGGTTTAATCGAGCGAATTGATGCGCTGTGCGATAGAATCAAGACCATAACACATTAATACAGCGCTTTATGAACATTAAATGTTTGCNAACGCTATTTATTCAGCCATTGTTTGGCTGTTAAAACTTGGTATGGGTTGNGGTCTCTTTGATCGTTTACGTGCCGATGTGACACACATGTGCTCAAGATTCTGCATCAGATTAACGCTCAATTTGTAACACTTCGAAAACGATACACCTTGGAACGTTACGCAGGCCAGACTATATCCAGGCAGGACCTAAAACTCGGCAACGCGTCCAAATCCGAGTGCCGAATTTCCACTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6917#0 GGAGGTAAGTGTACTGTGGTGCGTCTCGGTTTGTGCACACCACCAAAGTGCATTCTAATG 60
consensus_6917#1 ------------------------------------------------------------
consensus_6917#2 ------------------------------------------------------------
consensus_6917#0 AGGGACAATCGTTGGGGCCGGGCAGGTGGCAATTGTGAAAAATCACGACCCACCGTTTCT 120
consensus_6917#1 ------------------------------------------------------------
consensus_6917#2 ------------------------------------------------------------
consensus_6917#0 GGNAATTTCCATGTCCAACGAGATGATAAGTGTTACGTGCCGCACGTCAGCAGTGTGCGT 180
consensus_6917#1 ------------------------------------------------------------
consensus_6917#2 ------------------------------------------------------------
consensus_6917#0 CGGAAGTGATGGCTTCCAGGCGGGATCGCGAAGTCGTCGCTTCCTGTTTTGCCGGGCCGT 240
consensus_6917#1 ------------------------------------------------------------
consensus_6917#2 ------------------------------------------------------------
consensus_6917#0 GTGCTGCGAGCCGAGAATAGATCGTGGATTGTGTAATTTACATCATGTGCTGGTGCCCG- 299
consensus_6917#1 ---AGGCAGATCG-GCACGNGGCG-GAGTTGATCACTTGACA-CAACCGTTGGTTTGTAA 54
consensus_6917#2 ------------------------------------------------------------
consensus_6917#0 TATTCAGGTGCAGATCACTTGATCGTGTGTCAGCATAAACTCNCCGTTGCGAAATCATAT 359
consensus_6917#1 CAACCGGGCG-GCATCGCACCGGCATCACGAAACTAGCTTTCATTAGTGGGAAGTTGCAC 113
consensus_6917#2 --------------------------------GCAAGAATCGCACGAGGTGNGNATTACG 28
* * *
consensus_6917#0 CG-GACGGAGCGGGAGAGATCGGGAACGGGGACGTTCATTGGGGGGGTAATCACGAGGAT 418
consensus_6917#1 CTCGTCCGGACCCAAACCGTTGGCTTCCAC--CATACGCTGGCCAC-TAATGGCACTGCT 170
consensus_6917#2 CGGGACACTCAGCAGTACTTTTGTAAGCCAAGTCCCGCTCGGAAAGGGGACTGCATTGA- 87
* * * * * ** * * *
consensus_6917#0 GGACATTTGTCTAGTGTGGTTGTACCGATGAAAACAACCAGTGGCTGGGGTGTCAAACCC 478
consensus_6917#1 GATTATC-GTTCAAT----TTGCACCATTTAG--TAGC--GTCGCGAGTAAAGCGAACGG 221
consensus_6917#2 -GTTTTTGGCGGAAATGAATCTGCTCGTTGCGCTCAGCGCTTGCCCGCAAGGTGATGTTT 146
* * * * * * * * * *
consensus_6917#0 ACATGCAAGTTTGATTACAGCGTTCGGTACGATC-GTGCTCCGT-TCGCTGGC--ACGAT 534
consensus_6917#1 TTTTGGGAGTTTGATTACAGCGTTCGGTACGATC-GTGCTCCGT-TCGCTGGC--ACGAT 277
consensus_6917#2 CGATACAGGTC-GGCCAGAAAGTGCCGGACGAAAAGTGTTTCCCATTGCTGGTGGAGGTT 205
* ** * * * ** * * **** *** * * * ***** * * *
consensus_6917#0 GAAGCGCACTTTCGACTACCATCCGCCAACGATTTGCTACGACAAGCCTGCGATGGCCGT 594
consensus_6917#1 GAAGCGCACTTTCGATTACCATCCGCCAACGATTTGCTACGACAAGCCAGCGATGGCCGT 337
consensus_6917#2 TAATCGAGCGAATTGATGCGCTGTGCGATAGAATCAAGACCATAACACATTAATACAGCG 265
** ** * * * * ** * ** * ** * ** * **
consensus_6917#0 CGTCTCCAA----AGACGAGTACGAATCCCGTCGGATTCGGGCGCTGGCCGGCACCCGCG 650
consensus_6917#1 CGTCTCCAA----AGACGAGTACGAATCCCGTCGGATTCGGGCGCTGGCCGGCACCCGCG 393
consensus_6917#2 CTTTATGAACATTAAATGTTTGCNAACGCTATTT-ATTCAGCCATTGTTTGGCTGTTAAA 324
* * ** * * * * * ** * * **** * * ** ***
consensus_6917#0 TGCTGGAGCTGATCGTG-CCGAAACGATCGGCTCGCACGTGGACGATGCAGGCCGGTGAT 709
consensus_6917#1 TGCTGGAGCTGATCGTG-CCGAAACGATCGGCCCGCACGTGGACGATGCAGGCCGGCGAT 452
consensus_6917#2 ACTTGGTATGGGTTGNGGTCTCTTTGATCG-TTTACGTGCCGATGTGACACACATGTGCT 383
*** * * * * * ***** * * ** * ** * * * *
consensus_6917#0 GTGTGCCGCGTGTCCCTTCCGGAAGGGTCGCAGGTCGGCGATTTGAATCTG-TGGAACCT 768
consensus_6917#1 GTGTGCCGCGTGTCCCTTCCCGAAGGGTCGCAGGTCGGCGATTTGAATCTG-TGGAACCT 511
consensus_6917#2 CAAGATTCTGCATCAGATT---AACGCTCAATTTGTAACACTTCGAAAACGATACACCTT 440
* ** * ** * ** * ** *** * * * * *
consensus_6917#0 GGAGCACCCCCGGCAGGAACGGTTCTATT-CGGGCAAAACGCGCCAGATCCATTCGACGC 827
consensus_6917#1 GGAGCACCCCCGGCAGGAACGGTTCTTTTACGGGCAAAACGCGCCAGATCCATTCGACGC 571
consensus_6917#2 GGAACGTTAC--GCAGGCCAGACTATATC-CAGGCAGGAC---CTAAAACTCGGCAACGC 494
*** * * ***** * * * * * **** ** * * * * * ****
consensus_6917#0 ACCTGAAAACGTACGATCGACTGTGGAGCTGCTTTCC--GTA-CCTGCGGCCGAT--GGC 882
consensus_6917#1 ACCTGAAAACGTACGATCGGCTGTGGAGCTGCTTTCCCGGTAACCTGCGGCCGNATGGGC 631
consensus_6917#2 GTCCAAATCCGAGTG-CCGAATTTCCACTT------------------------------ 523
* ** ** * ** * * * *
consensus_6917#0 CACGTTA--GTGC--GGGATTC-GCTCGCA-GACTACGGCATCGATCGGGAT-GGCGGA- 934
consensus_6917#1 CACNGTATAGNGCCGGGNATTCCGCTCGCAAGACTACGGCATCGATCGGGATTGGCGGNA 691
consensus_6917#2 ------------------------------------------------------------
consensus_6917#0 -TCGCTG-CACGATGTGG--TCGGG--ACGAGGTGTGATGACTACATCTACAAGCTTATT 988
consensus_6917#1 TTCGCTGGCACGATGTGGGGNCGGGGAACGAAAGGTGGTGCATG-ACTTACATTCTAACC 750
consensus_6917#2 ------------------------------------------------------------
consensus_6917#0 ACGGGGCAGGATCGGTTCGGCAGCTGCCACAGCTACCTGACCGAGGCCGTGAAGGAGCAC 1048
consensus_6917#1 AAGGCTTATTAACNGG--GGCAAGGANCCGGGTT--CGGGCAAAAGTTTGGCCACAGGTT 806
consensus_6917#2 ------------------------------------------------------------
consensus_6917#0 GGTTTGGGCGAGGAGGATGTGCACGACACGTGGAACATTTTCATGTGCACCGGGTTTACG 1108
consensus_6917#1 AACTTGGACCGAAGGCCCGTTGAAGG---------------------------------- 832
consensus_6917#2 ------------------------------------------------------------
consensus_6917#0 CAGGACACTCAGCAGTACTTTTGTAAGCCAAGTCCCGCTCGGAAAGGGGACTGTATTGAG 1168
consensus_6917#1 ------------------------------------------------------------
consensus_6917#2 ------------------------------------------------------------
consensus_6917#0 TTTTTGGCGGAAATGAATCTGCTCGTTGCGCTCAGCGCTTGNCCGCAGGGTGATG 1223
consensus_6917#1 -------------------------------------------------------
consensus_6917#2 -------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||