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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6933#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 872 fasta sequence
[ATCGGTAGATTTCGAAAGTTTGTACTGTGGTTTTAGGGAAGAATCCTGAATAGTGGTTGTGCAGCAGTTGTGAAAAGTGCAGTACGATGAATACGGAAACGATCGATACGGGACCAGTGTTGGAGGGTGCACTGAATGTGGCCGAGTTCTATCGTGACGCGACCGTGCTGGTTACCGGTGGCACCGGCTTTATCGGCAAAGTGTTGGTGGAGAAGCTGCTGCGTTGCTTTGAGGTGAAGAAGATCTTTCTGCTGATCCGGCGCAAAGCGAACGTCAGTGCGACGGATCGTCTCCAGCAGATGCTGGAAGGACCGATCTTCGACACAATCCGTAGCACGGCACCGGATGCGAAGGAGCGCTTTGCTAAGGTCGTAGCAATGGATGCCGCATTCGATCGCGAGGACATTGTGGATGACGTCGACAAGACGAAACTTTGTAACGAAGTGCAGATCGTTTTCCACGTGATGGCCTCGATCCGGTTCAACGAGGTGCTGGACGAAGCGATCGCGATCAACGTCACCTCAGCGCAGCGGCTGTACGCCCTCGCCAGCTCGATGGCGGAACTGCGCTCGATCGTGCACGTGTCGACGTTCTACGCGAACTGTGATCGGCCATACATCGAGGAGCGCATCTACGACGACGTACCGTACGGAGGGCTCGAGCACATCCAGCTATTCTTCAAGAGCCTCAGCGTGGAGGAGAAGGAACGCATGACGCGGGTGGTGCTGGGCAATATGCCCAACTCGTACGTGTTTAGCAAAAAGTGTGCGGAGGCCATGGTTGGCCGCGAGTTTGGCCATCTGCCGATTGGGATCTTCCGGCCGCCGATCGTGATCTCGAGCTACCGCGAGCCGGAACCGGGCTGGGTGGAC]
[+] EMBL BX621566 [ATCGGTAGATTTCGAAAGTTTGTACTGTGGTTTTAGGGAAGAATCCTGAATAGTGGTTGTGCAGCAGTTGTGAAAAGTGCAGTACGATGAATACGGAAACGATCGATACGGGACCAGTGTTGGAGGGTGCACTGAATGTGGCCGAGTTCTATCGTGACGCGACCGTGCTGGTTACCGGTGGCACCGGCTTTATCGGCAAAGTGTTGGTGGAGAAGCTGCTGCGTTGCTTTGAGGTGAAGAAGATCTTTCTGCTGATCCGGCGCAAAGCGAACGTCAGTGCGACGGATCGTCTCCAGCAGATGCTGGAAGGACCGATCTTCGACACAATCCGTAGCACGGCACCGGATGCGAAGGAGCGCTTTGCTAAGGTCGTAGCAATGGATGCCGCATTCGATCGCGAGGACATTGTGGATGACGTCGACAAGACGAAACTTTGTAACGAAGTGCAGATCGTTTTCCACGTGATGGCCTCGATCCGGTTCAACGAGGTGCTGGACGAAGCGATCGCGATCAACGTCACCTCAGCGCAGCGGCTGTACGCCCTCGCCAGCTCGATGGCGGAACTGCGCTCGATCGTGCACGTGTCGACGTTCTACGCGAACTGTGATCGGCCATACATCGAGGAGCGCATCTACGACGACGTACCGTACGGAGGGCTCGAGCACATCCAGCTATTCTTCAAGAGCCTCAGCGTGGAGGAGAAGGAACGCATGACGCGGGTGGTGCTGGGCAATATGCCCAACTCGTA ]
[+] EMBL BX622546 [ AGGGAAGAATCCTGAATAGTGGTTGTGCAGCAGTTGTGAAAAGTGCAGTACGATGAATACGGAAACGATCGATACGGGACCAGTGTTGGAGGGTGCACTGAATGTGGCCGAGTTCTATCGTGACGCGACCGTGCTGGTTACCGGTGGCACCGGCTTTATCGGCAAAGTGTTGGTGGAGAAGCTGCTGCGTTGCTTTGAGGTGAAGAAGATCTTTCTGCTGATCCGGCGCAAAGCGAACGTCAGTGCGACGGATCGTCTCCAGCAGATGCTGGAAGGACCGATCTTCGACACAATCCGTAGCACGGCACCGGATGCGAAGGAGCGCTTTGCTAAGGTCGTAGCAATGGATGCCGCATTCGATCGCGAGGACATTGTGGATGACGTCGACAAGACGAAACTTTGTAACGAAGTGCAGATCGTTTTCCACGTGATGGCCTCGATCCGGTTCAACGAGGTGCTGGACGAAGCGATCGCGATCAACGTCACCTCAGCGCAGCGGCTGTACGCCCTCGCCAGCTCGATGGCGGAACTGCGCTCGATCGTGCACGTGTCGACGTTCTACGCGAACTGTGATCGGCCATACATCGAGGAGCGCATCTACGACGACGTACCGTACGGAGGGCTCGAGCACATCCAGCTATTCTTCAAGAGCCTCAGCGTGGAGGAGAANGAACGCATGACGCGGGTGGTGCTGGGCAATATGCCCAACTCGTACGTGTTTAGCAAAAAGTGTGCGGANGCCATGGTTGGCCGCGAGTTTGGNCATCTGCCGATTGGGATCTTCCGGNCGCCGATCGTGATCTCG ]
[+] EMBL BX626306 [ CTATTCTTCAAGAGCCTCAGCGTGGAGGANAAGGAACGCATGACGCGGGTGGTGCTGGGTAATATGCCCAACTCGTACGTGTTTAGCAAAAAGTGTGCGGAGGCCATGGTTGGCCNCGAGTTTGGCCATCTGCCNATTGGGATCTTCCGGCCGCCGATCGNGATCTCCAGCTACCGC ]
[+] EMBL BX622537 [ ACGCATGACGCGGGTGGTGCTGGGCAATATGCCCAACTCGTACGTGTTTAGCAAAAAGTGTGCGGAGGCCATGGTTGGCCGCGAGTTTGGCCATCTGCCGATTGGGATCTTCCGGCCGCCGATCGTGATCTCNAGCTACCGGGAGCCGGAACCGGGCTGGGTGGAC]
consensusID : consensus_6933#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence
[GAGGCAAGAATCGCCACGAGGTTGTAAACTTTGTAACGAAGTGCAGATCGTTTTCCACGTGATGGGCTCGATCCGGTTCAACGAGGTGCTGGACGAAGCGATCGCGATCAACGTCACCTCAGGCAGCGGNTGTACGCCCTCGCCAGCTCGATGGCGGAACTGCGCTCGATCGTGCACGTGTCGACGTTCTANGCGAACTGTGATCGGCATACATCGAGGAGCGCATCTACGACGACGTACCGTACGGAGGGCTCGAGCACATCCAGTATTCTTCAAGAGCCTCAGCGTGGAGGAGAAGGAACGCATGACGCGGGTGGTGCTGGGCCAATATGNCCAATCGTACGTGTTTAGCAAAAAGTGTGCGGAGGCCATGGTTTGGGCCGCCGAGGTTTTGGCATCTGCCGATTGGGATCTTCCGGCCGCCGATCGTGATCTCGAGCTACCGGGAGCCGGAACCGGGCTGGGTGGACTGTTTCCACGGTGCCACCGGGTTGTAGCGTGCCGGTCAGTCCTGGGCAAGACGATGTGGTACTATGGGAAGCC]
[+] EMBL AL696996 [GAGGCAAGAATCGCCACGAGGTTGTAAACTTTGTAACGAAGTGCAGATCGTTTTCCACGTGATGGGCTCGATCCGGTTCAACGAGGTGCTGGACGAAGCGATCGCGATCAACGTCACCTCAGGCAGCGGNTGTACGCCCTCGCCAGCTCGATGGCGGAACTGCGCTCGATCGTGCACGTGTCGACGTTCTANGCGAACTGTGATCGGCATACATCGAGGAGCGCATCTACGACGACGTACCGTACGGAGGGCTCGAGCACATCCAGTATTCTTCAAGAGCCTCAGCGTGGAGGAGAAGGAACGCATGACGCGGGTGGTGCTGGGCCAATATGNCCAATCGTACGTGTTTAGCAAAAAGTGTGCGGAGGCCATGGTTTGGGCCGCCGAGGTTTTGGCATCTGCCGATTGGGATCTTCCGGCCGCCGATCGTGATCTCGAGCTACCGGGAGCCGGAACCGGGCTGGGTGGACTGTTTCCACGGTGCCACCGGGTTGTAGCGTGCCGGTCAGTCCTGGGCAAGACGATGTGGTACTATGGGAAGCC]
consensusID : consensus_6933#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence
[TGGATCTTCGGCGCGATCGTGATCTCAGCTACGCGAGCCGGAACGGGCTGGTGGACTGTTCACGTGCCACCGGGTTGTGCGTGCCGGTCGTTCTGGGCAAGACGATGTGGTACTATGGGAAGCCGGAGGTAAAAGCCGTTCATGGTCGCCGGTCGATCATACGGTGTCGGGGATGTTGGCGGCGGCGTGCGACATCTATCGCCGACAGTGCACCATTCTGCCGGTGGAAAAGCCGGTCCCGGTGTATAACTTTACGTTCGAGAAGAACCGGTTCGCTTACGGCGATATGGTGGAGCTGGTCTGCTCTGGTTTGCCGAACGTGCTCGATCGATGGCTGAGTCGCATCAAATGCCGCATCAGTCCTTGGAAAATATTTCCCCAAATGCTGCT]
[+] EMBL AL932825 [TGGATCTTCGGCGCGATCGTGATCTCAGCTACGCGAGCCGGAACGGGCTGGTGGACTGTTCACGTGCCACCGGGTTGTGCGTGCCGGTCGTTCTGGGCAAGACGATGTGGTACTATGGGAAGCCGGAGGTAAAAGCCGTTCATGGTCGCCGGTCGATCATACGGTGTCGGGGATGTTGGCGGCGGCGTGCGACATCTATCGCCGACAGTGCACCATTCTGCCGGTGGAAAAGCCGGTCCCGGTGTATAACTTTACGTTCGAGAAGAACCGGTTCGCTTACGGCGATATGGTGGAGCTGGTCTGCTCTGGTTTGCCGAACGTGCTCGATCGATGGCTGAGTCGCATCAAATGCCGCATCAGTCCTTGGAAAATATTTCCCCAAATGCTGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6933#0 ATCGGTAGATTTCGAAAGTTTGTACTGTGGTTTTAGGGAAGAATCCTGAATAGTGGTTGT 60
consensus_6933#1 ------------------------------------------------------------
consensus_6933#2 ------------------------------------------------------------
consensus_6933#0 GCAGCAGTTGTGAAAAGTGCAGTACGATGAATACGGAAACGATCGATACGGGACCAGTGT 120
consensus_6933#1 ------------------------------------------------------------
consensus_6933#2 ------------------------------------------------------------
consensus_6933#0 TGGAGGGTGCACTGAATGTGGCCGAGTTCTATCGTGACGCGACCGTGCTGGTTACCGGTG 180
consensus_6933#1 ------------------------------------------------------------
consensus_6933#2 ------------------------------------------------------------
consensus_6933#0 GCACCGGCTTTATCGGCAAAGTGTTGGTGGAGAAGCTGCTGCGTTGCTTTGAGGTGAAGA 240
consensus_6933#1 ------------------------------------------------------------
consensus_6933#2 ------------------------------------------------------------
consensus_6933#0 AGATCTTTCTGCTGATCCGGCGCAAAGCGAACGTCAGTGCGACGGATCGTCTCCAGCAGA 300
consensus_6933#1 ------------------------------------------------------------
consensus_6933#2 ------------------------------------------------------------
consensus_6933#0 TGCTGGAAGGACCGATCTTCGACACAATCCGTAGCACGGCACCGGATGCGAAGGAGCGCT 360
consensus_6933#1 ------------------------------------------------------------
consensus_6933#2 ------------------------------------------------------------
consensus_6933#0 TTGCTAAGGTCGTAGCAATGGATGCCGCATTCGATCGCGAGGACATTGTGGATGACGTCG 420
consensus_6933#1 --------------------------------------------GAGGCAAGAATCGCCA 16
consensus_6933#2 ------------------------------------------------------------
consensus_6933#0 ACAAGACG-AAACTTTGTAACGAAGTGCAGATCGTTTTCCACGTGATGGCCTCGATCCGG 479
consensus_6933#1 CGAGGTTGTAAACTTTGTAACGAAGTGCAGATCGTTTTCCACGTGATGGGCTCGATCCGG 76
consensus_6933#2 ---------------TGGATCTTCGGCGCGATCGTGATCTCAGCTACG----CGAGCCGG 41
** * * * ****** ** * * * *** ****
consensus_6933#0 TTCAACGAGGTGCTGGACGAAGCGATCGCGATCAACGTCACCTCAGCGCAGCGGCTGTAC 539
consensus_6933#1 TTCAACGAGGTGCTGGACGAAGCGATCGCGATCAACGTCACCTCAG-GCAGCGGNTGTAC 135
consensus_6933#2 ---AACGGGCTGGTGGAC----TGTTCACG-----TGCCACCGGGTTGTGCGTGCCGGTC 89
**** * ** ***** * ** ** * **** * * * *
consensus_6933#0 GCCCTCGCCAGCTCGATGGCGGAACTGCGCTCGATCGTGCACGTGTCGACGTTCTACGCG 599
consensus_6933#1 GCCCTCGCCAGCTCGATGGCGGAACTGCGCTCGATCGTGCACGTGTCGACGTTCTANGCG 195
consensus_6933#2 GTTCTGGGCAAGACGATG-TGGTACTATGGGAAGCCGGAG----GTAAAAGCCGTTCATG 144
* ** * ** ***** ** *** * ** ** * * * *
consensus_6933#0 AACTGTGATCGGCCATACATCGAGGAGCGCATCTACGACGACGTACCGTACGGAGGGCTC 659
consensus_6933#1 AACTGTGATCGGC-ATACATCGAGGAGCGCATCTACGACGACGTACCGTACGGAGGGCTC 254
consensus_6933#2 GTCGCCGGTCGATCATACGGTGTCGGGGATGTTGGCGGCGGCGTGCGACATCTATCGCCG 204
* * *** **** * * * * ** ** *** * * * **
consensus_6933#0 G-AGCACATCCAGCTATTCTTCAAGA-----GCCTCAGCGTGGAGGAGAAGGAACGCATG 713
consensus_6933#1 G-AGCACATCCAG-TATTCTTCAAGA-----GCCTCAGCGTGGAGGAGAAGGAACGCATG 307
consensus_6933#2 ACAGTGCACCATTCTGCCGGTGGAAAAGCCGGTCCCGGTGTATAACTTTACGTTCGAGAA 264
** ** * * * * * * * * * ** * * * **
consensus_6933#0 ACGCGGGTGGTGCTGGGC-AATATGCCCAACTCGTACGTGTTTAGCAAA--AAGTGTGCG 770
consensus_6933#1 ACGCGGGTGGTGCTGGGCCAATATGNCCAA-TCGTACGTGTTTAGCAAA--AAGTGTGCG 364
consensus_6933#2 GAACCGGTTCGCTTACGGCGATATGGTGGAGCTGGTCTGCTCTGGTTTGCCGAACGTGCT 324
* *** * * ***** * * * * * * * ****
consensus_6933#0 GAGGCCATGGTT--GGCCGC--GAGTTTGGCCATCTGCCGATTGGGATCTTCCGGCCGCC 826
consensus_6933#1 GAGGCCATGGTTTGGGCCGCCGAGGTTTTGGCATCTGCCGATTGGGATCTTCCGGCCGCC 424
consensus_6933#2 CGATCGATGGCT-GAGTCGCATCAAATGCCGCATCAGTCCTTGGAAAATATTT--CCCCA 381
* **** * * *** * **** * * * * * * ** *
consensus_6933#0 GATCGTGATCTCGAGCTACCGCGAGCCGGAACCGGGCTGGGTGGAC-------------- 872
consensus_6933#1 GATCGTGATCTCGAGCTACCGGGAGCCGGAACCGGGCTGGGTGGACTGTTTCCACGGTGC 484
consensus_6933#2 AATGCTGCT--------------------------------------------------- 390
** ** *
consensus_6933#0 -----------------------------------------------------------
consensus_6933#1 CACCGGGTTGTAGCGTGCCGGTCAGTCCTGGGCAAGACGATGTGGTACTATGGGAAGCC 543
consensus_6933#2 -----------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||