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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6934#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1327 fasta sequence
[TATCGTAATGCGATTGCGATTGCGATGCAAATACAATGCTTTCCATTTGCGCGCAGTATCAAAAACCTGGCTATCGAACAATGATGTTTGCTTTAAATAGGTACGAGGTGTGCGAGATACGGCTTGCGCTTTTTCAACCGTTAGTTAGATTCTTTTTGTGTTTTTTTTTCTTTCTTCTTTTAAATATGAAAATAGCAATTGACTGTTGCATCGAAATAAATCACACTTTTAAGCAATGCGCTTCAGGAGCAAACAAAGAGAAAGGAAAACACGAATGAAACTCTCGAATCAAAGTGAAACAAAAGGAAAGTTCAGTCACCGGGGTGAGTGATCAAAAAGCATAATAAACAAATACGAAACATATAACTACCATAAATACGGACGGAGATACGAAAACATACACTATCGTGCGTAATCTATTGCCATGAACTCTGTTCAATTTCGAGGAAAAGATAAACTATAATACAATTATAACACGTTTAATGCAGTGTGTGCGGCGCACGGCTCTAGCAAAGGGGCGGACTATCGTAAAATATCCATTAAACATGATTAGTGGTGGACATTTTATGA-TTAAAAAAAAAGTTTTTAGTTTTTGTGTTGCTCCCTTTCTTATCCATCATTTTTGTCGCTAGTTTTTTTTTTTATTGATGCGAAAGGA-TTTTTTTAAATAGAGCTTCTGTATAATTACTCCTGCGCGCGCGTGTGAGACTATGCACNACGAGGAGTTTAAAGTTGATATCAACACAAAATATCATCCTATTCAAAACATCATCATCGTCATCAATCATTATTGCATTGTTTGGAAGCATCAGCAGCACTACGATGAGTTAAGCAAA-ACAAAAAACAAGCTAGTTTAGATTTAAGAAACTAAATTGGAGCGAAAAAGCGAACGAAAGGCATAAAAA--AACCATAATCTTTCGCTTTTCGCTCAAGTGAAACACAGAAAGGACAGAAAGTGCAAGCAGCAGCAGCAGCAGTGGGCTGTAATAGCTGCTGGGTGGTGTTTAAGTGTATTATTGCTGTGTAATGTAGTAGTGTCCCCTACTCCTTCCGTACTTTCTTCGTCACACATTCGCGTCCACATATAATCTTTACAATTGCGTTGCTTTTCGCGGTGGTGAGCGATTTTTTTCTTCTTCGGANCACCAGCAGTAGGTACTANGCTAGAGCTAGGATTACGGCGCATGTAAGCAATGCGAAACAAATCAAAAACATATACACGTACCGCCCTCTGGTTTCTGGTCGTNCCCATCTCGTCTNGTTTTCNGTCAGTGAAATAGGGGGGAAAAACAGATGTAAATTCACGAACTCTAACATATAAAACCAT]
[+] EMBL BX620611 [TATCGTAATGCGATTGCGATTGCGATGCAAATACAATGCTTTCCATTTGCGCGCAGTATCAAAAACCTGGCTATCGAACAATGATGTTTGCTTTAAATAGGTACGAGGTGTGCGAGATACGGCTTGCGCTTTTTCAACCGTTAGTTAGATTCTTTTTGTGTTTTTTTTTCTTTCTTCTTTTAAATATGAAAATAGCAATTGACTGTTGCATCGAAATAAATCACACTTTTAAGCAATGCGCTTCAGGAGCAAACAAAGAGAAAGGAAAACACGAATGAAACTCTCGAATCAAAGTGAAACAAAAGGAAAGTTCAGTCACCGGGGTGAGTGATCAAAAAGCATAATAAACAAATACGAAACATATAACTACCATAAATACGGACGGAGATACGAAAACATACACTATCGTGCGTAATCTATTGCCATGAACTCTGTTCAATTTCGAGGAAAAGATAAACTATAATACAATTATAACACGTTTAATGCAGTGTGTGCGGCGCACGGCTCTAGCAAAGGGGCGGACTATCGTAAAATATCCATTAAACATGATTAGTGGTGGACATTTTATGA TTAAAAAAAAAGTTTTTAGTTTTTGTGTTGCTCCCTTTCTTATCCATCATTTTTGTCGCTAGTTTTTTTTTTTATTGATGCGAAAGGA TTTTTTTAAATAGAGCTTCTGTATAATTACTCCTGCGCGCGCGTGTGAGACTATGCACNACG ]
[+] EMBL BM639532 [ ccgCGAAAACATATACTATCGTGCGTAATCTATTGCCATGAACTCTGTTCAATTTCGAGGAAAAGATAAACTATAATACAATTATAACACGTTTAATGCAGTGTGTGCAGCGCACGGCTCTAGCAAAGGGGCGGACTATCGTAAAATATCCATTAAACATGATTAGTGGTGGACATTTTATGATTTAAAGAAAAAGTTTTTAGTTTTTGTGTTGCTCCCTTTCTT TCCATCATTTTTGTCACTAG TTTTTTTTATTGATGCGAAAGGATTTTTTTTAAATAGAGCTTCTGTATAATTACTCCTGCGCGCGCGTGTGAGACTATGCACAACGAGGAGTTTAAAGTTGATATCAACACAAAATATCATCCTATTCAAAACATCATCATCGTCATCAATCATTATTGCATTGTTTGGAAGCATCAGCAGCACTACGATGAGTTAAGCAAA ACAAAAAACAAGCTAGTTTAGATTTAAGAAACTAAATTGGAGCGAAAAAGCGAACGAAAGGCATAAAAA AACCATAATCTTTCGCTTTTCGCTCAAGTGAAACACAGAAAGGACAGAAAGTGCAAGCAGCAGCAGCAGCAGTGGGCTGTAATAGCTGCTGGGTGGTGTTTAAGTGTATTATTGCTGTGTAATGTAGTAGTGTCCCCTACTCCTTCCGTACTTTCTTCGTCACACATTCGCGTC ]
[+] EMBL BX624249 [ acagatacAGTTAAGCAAANGCAAAAAACAAGCTAGTTTAGATTTAAGCAACTAAATTAGAGCTTAAAAGCGAACGAAAGGCGTAAAAAATAACAATTATCTTTCGCTTTTCGCTCAAGTGAAACACAGAAAGGGCAGAAAGTGCAAGCAGCAGCAGCAGCAGTGGGCTGTAATAGCTGCTGGGTGGTGTTTAAGTGTATTATTGCTGTGTAATGTAGTAGTGTCCCCTACTCCTTCCGTACTTTCTTCGTCACACATTCGCGTCCACATATAATCTTTACAATTGCGTTGCTTTTCGCGGTGGTGAGCGATTTTTTTCTTCTTCGGANCACCAGCAGTAGGTACTANGCTAGAGCTAGGATTACGGCGCATGTAAGCAATGCGAAACAAATCAAAAACATATACACGTACCGCCCTCTGGTTTCTGGTCGTNCCCATCTCGTCTNGTTTTCNGTCAGTGAAATAGGGGGGAAAAACAGATGTAAATTCACGAACTCTAACATATAAAACCAT]
consensusID : consensus_6934#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 639 fasta sequence
[CCGGCGCTTTGCAAGAAAAGGGACATCATTTGGACCACAAAGCCTAGGCGAAACGGGACAGTAAGAATAGAGGATATAATATATGCTACAGTTGCTTGCTCTACTACGCTAAACAATCGTGCAAAGGCCGCACTGGTATGCGGACAGAGAGATAGCAGCAGGA--AAGGGAAAAGCATTCGTATATCATCAGCCTTATGTGTTTCTCCGCTTTGGGTGGATGGTCGTTTAGGAAATTTATGCTACTTTCTTTTTAAAAAGCAAATATCATAATGCGATTGCGATGCAAATACAATGCTTTCCATTTGCCGCGGTATCAAAAATCTGGCTACCGAACAATGATGTTTGCTTTAAATAGGTACGAGGTGTGCGAGATACGGCTTGCGCTTTTTCAACCGTGTTAGTTAGATTCTTTTCTTTTTGAGTTTTTTTTTCTTCTTTTTAATATGAAAATAGCAATTGACTGTTGCGTCGAAATAAATCACACTTTAAAGCAATGCGCTTCAGGAGCAAACAAAGAAAAAGGAAAACACGAATGAAACTCTCGAATCAAAGTGAAAAAAAAGGAAAGTTCAGTCACCGGGGTGAGTGATCCAAAAGCATAATAAACAAATACGAAACATATAACTACCATAACTACGG]
[+] EMBL BM634500 [CCGGCGCTTTGCAAGAAAAGGGACATCATTTGGACCACAAAGCCTAGGCGAAACGGGACAGTAAGAATAGAGGATATAATATATGCTACAGTTGCTTGCTCTACTACGCTAAACAATCGTGCAAAGGCCGCACTGGTATGCGGACAGAGAGATAGCAGCAGGA AAGGGAAAAGCATTCGTATATCATCAGCCTTATGTGTTTCTCCGCTTTGGGTGGATGGTCGTTTAGGAAATTTATGCTACTTTCTTTTTAAAAAGCAAATATCATAATGCGATTGCGATGCAAATACAATGCTTTCCATTTGCCGCGGTATCAAAAATCTGGCTACCGAACAATGATGTTTGCTTTAAATAGGTACGAGGTGTGCGAGATACGGCTTGCGCTTTTTCAACCGTGTTAGTTAGATTCTTTTCTTTTTGAGTTTTTTTTTCTTCTTTTTAATATGAAAATAGCAATTGACTGTTGCGTCGAAATAAATCACACTTTAAAGCAATGCGCTTCAGGAGCAAACAAAGAAAAAGGAAAACACGAATGAAACTCTCGAATCAAAGTGAAAAAAAAGGAAAGTTCAGTCACCGGGGTGAGTGATCCAAAAGCATAATAAACAAATACGAAACATATAACTACCATAACTACGG]
[+] EMBL BM581032 [ CCGCAAAGCCTAGGCAAAACGGGGCAGTAAGAACAGAGGATATAATATATGCTACAGTTGCTTGCTCTACTACGCTAAACAATCGTTCAAAGGCCGCACTGGTATGCGGACAGAGAGACAGCAGCAGGAGGAAGGGAAAAGCATTCGTATATCATCAGCCT ]
consensusID : consensus_6934#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence
[CCGCATAATGCGATTGCGATGCAAATACAATGCTTTCCATTTGCCGCGGTATCAAAAATCTGGCTACCGAACAATGATGTTTGCTTTAAATAGGTACGAGGTGTGCGAGATACGGCTTGCGCTTTTTCAACCGTGTTAGTTAGATTCTTTTCTTTTTGAGTTTTTTTTTCTTCTTTTTAATATGAAAATAGCAATTGACTGTTGCGTCGAAATAAATCACACTTTAAAGCAATGCGCTTCAGGAGCAAACAAAGAAAAAGGAAAACACGAATGAAACTCTCGAATCAAAGTGAAAAAAAAGGAAAGTTCAGTCACCGGGGTGAGTGATCAAAAAGCATAATAAACAAATACGAAACATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCC]
[+] EMBL BM608865 [CCGCATAATGCGATTGCGATGCAAATACAATGCTTTCCATTTGCCGCGGTATCAAAAATCTGGCTACCGAACAATGATGTTTGCTTTAAATAGGTACGAGGTGTGCGAGATACGGCTTGCGCTTTTTCAACCGTGTTAGTTAGATTCTTTTCTTTTTGAGTTTTTTTTTCTTCTTTTTAATATGAAAATAGCAATTGACTGTTGCGTCGAAATAAATCACACTTTAAAGCAATGCGCTTCAGGAGCAAACAAAGAAAAAGGAAAACACGAATGAAACTCTCGAATCAAAGTGAAAAAAAAGGAAAGTTCAGTCACCGGGGTGAGTGATCAAAAAGCATAATAAACAAATACGAAACATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6934#1 CCGGCGCTTTGCAAGAAAAGGGACATCATTTGGACCACAAAGCCTAGGCGAAACGGGACA 60
consensus_6934#2 ------------------------------------------------------------
consensus_6934#0 ------------------------------------------------------------
consensus_6934#1 GTAAGAATAGAGGATATAATATATGCTACAGTTGCTTGCTCTACTACGCTAAACAATCGT 120
consensus_6934#2 ------------------------------------------------------------
consensus_6934#0 ------------------------------------------------------------
consensus_6934#1 GCAAAGGCCGCACTGGTATGCGGACAGAGAGATAGCAGCAGGAAAGGGAAAAGCATTCGT 180
consensus_6934#2 ------------------------------------------------------------
consensus_6934#0 ------------------------------------------------------------
consensus_6934#1 ATATCATCAGCCTTATGTGTTTCTCCGCTTTGGGTGGATGGTCGTTTAGGAAATTTATGC 240
consensus_6934#2 ------------------------------------------------------------
consensus_6934#0 ------------------------------------------------------------
consensus_6934#1 TACTTTCTTTTTAAAAAGCAAATATCATAATGCGATTGCGATGCAAATACAATGCTTTCC 300
consensus_6934#2 ----------------------CCGCATAATGCGATTGCGATGCAAATACAATGCTTTCC 38
consensus_6934#0 --------------TATCGTAATGCGAT--TGCGATTGCGATGCAAATACAATGCTTTCC 44
** ******************************
consensus_6934#1 ATTTGC-CGCGGTATCAAAAATCTGGCTACCGAACAATGATGTTTGCTTTAAATAGGTAC 359
consensus_6934#2 ATTTGC-CGCGGTATCAAAAATCTGGCTACCGAACAATGATGTTTGCTTTAAATAGGTAC 97
consensus_6934#0 ATTTGCGCGCAGTATCAAAAACCTGGCTATCGAACAATGATGTTTGCTTTAAATAGGTAC 104
****** *** ********** ******* ******************************
consensus_6934#1 GAGGTGTGCGAGATACGGCTTGCGCTTTTTCAACCGTGTTAGTTAGATTCTTTTCTTTTT 419
consensus_6934#2 GAGGTGTGCGAGATACGGCTTGCGCTTTTTCAACCGTGTTAGTTAGATTCTTTTCTTTTT 157
consensus_6934#0 GAGGTGTGCGAGATACGGCTTGCGCTTTTTCAACCGT--TAGTTAGATTCTTTTTGTGTT 162
************************************* *************** * **
consensus_6934#1 GAGTTTTTTTTTCTTCTTTTTAATATGAAAATAGCAATTGACTGTTGCGTCGAAATAAAT 479
consensus_6934#2 GAGTTTTTTTTTCTTCTTTTTAATATGAAAATAGCAATTGACTGTTGCGTCGAAATAAAT 217
consensus_6934#0 TT-TTTTTCTTTCTTCTTTTAAATATGAAAATAGCAATTGACTGTTGCATCGAAATAAAT 221
***** *********** *************************** ***********
consensus_6934#1 CACACTTTAAAGCAATGCGCTTCAGGAGCAAACAAAGAAAAAGGAAAACACGAATGAAAC 539
consensus_6934#2 CACACTTTAAAGCAATGCGCTTCAGGAGCAAACAAAGAAAAAGGAAAACACGAATGAAAC 277
consensus_6934#0 CACACTTTTAAGCAATGCGCTTCAGGAGCAAACAAAGAGAAAGGAAAACACGAATGAAAC 281
******** ***************************** *********************
consensus_6934#1 TCTCGAATCAAAGTGAAAAAAAAGGAAAGTTCAGTCACCGGGGTGAGTGATCCAAAAGCA 599
consensus_6934#2 TCTCGAATCAAAGTGAAAAAAAAGGAAAGTTCAGTCACCGGGGTGAGTGATCAAAAAGCA 337
consensus_6934#0 TCTCGAATCAAAGTGAAACAAAAGGAAAGTTCAGTCACCGGGGTGAGTGATCAAAAAGCA 341
****************** ********************************* *******
consensus_6934#1 TAATAAACAAATACGAAACATATAACTACCATAACTACGG-------------------- 639
consensus_6934#2 TAATAAACAAATACGAAACATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC 397
consensus_6934#0 TAATAAACAAATACGAAACATATAACTACCATAAATACGGACGGAGATACGAAAACATAC 401
************************* * * ** *
consensus_6934#1 ------------------------------------------------------------
consensus_6934#2 CC---------------------------------------------------------- 399
consensus_6934#0 ACTATCGTGCGTAATCTATTGCCATGAACTCTGTTCAATTTCGAGGAAAAGATAAACTAT 461
consensus_6934#1 ------------------------------------------------------------
consensus_6934#2 ------------------------------------------------------------
consensus_6934#0 AATACAATTATAACACGTTTAATGCAGTGTGTGCGGCGCACGGCTCTAGCAAAGGGGCGG 521
consensus_6934#1 ------------------------------------------------------------
consensus_6934#2 ------------------------------------------------------------
consensus_6934#0 ACTATCGTAAAATATCCATTAAACATGATTAGTGGTGGACATTTTATGATTAAAAAAAAA 581
consensus_6934#1 ------------------------------------------------------------
consensus_6934#2 ------------------------------------------------------------
consensus_6934#0 GTTTTTAGTTTTTGTGTTGCTCCCTTTCTTATCCATCATTTTTGTCGCTAGTTTTTTTTT 641
consensus_6934#1 ------------------------------------------------------------
consensus_6934#2 ------------------------------------------------------------
consensus_6934#0 TTATTGATGCGAAAGGATTTTTTTAAATAGAGCTTCTGTATAATTACTCCTGCGCGCGCG 701
consensus_6934#1 ------------------------------------------------------------
consensus_6934#2 ------------------------------------------------------------
consensus_6934#0 TGTGAGACTATGCACNACGAGGAGTTTAAAGTTGATATCAACACAAAATATCATCCTATT 761
consensus_6934#1 ------------------------------------------------------------
consensus_6934#2 ------------------------------------------------------------
consensus_6934#0 CAAAACATCATCATCGTCATCAATCATTATTGCATTGTTTGGAAGCATCAGCAGCACTAC 821
consensus_6934#1 ------------------------------------------------------------
consensus_6934#2 ------------------------------------------------------------
consensus_6934#0 GATGAGTTAAGCAAAACAAAAAACAAGCTAGTTTAGATTTAAGAAACTAAATTGGAGCGA 881
consensus_6934#1 ------------------------------------------------------------
consensus_6934#2 ------------------------------------------------------------
consensus_6934#0 AAAAGCGAACGAAAGGCATAAAAAAACCATAATCTTTCGCTTTTCGCTCAAGTGAAACAC 941
consensus_6934#1 ------------------------------------------------------------
consensus_6934#2 ------------------------------------------------------------
consensus_6934#0 AGAAAGGACAGAAAGTGCAAGCAGCAGCAGCAGCAGTGGGCTGTAATAGCTGCTGGGTGG 1001
consensus_6934#1 ------------------------------------------------------------
consensus_6934#2 ------------------------------------------------------------
consensus_6934#0 TGTTTAAGTGTATTATTGCTGTGTAATGTAGTAGTGTCCCCTACTCCTTCCGTACTTTCT 1061
consensus_6934#1 ------------------------------------------------------------
consensus_6934#2 ------------------------------------------------------------
consensus_6934#0 TCGTCACACATTCGCGTCCACATATAATCTTTACAATTGCGTTGCTTTTCGCGGTGGTGA 1121
consensus_6934#1 ------------------------------------------------------------
consensus_6934#2 ------------------------------------------------------------
consensus_6934#0 GCGATTTTTTTCTTCTTCGGANCACCAGCAGTAGGTACTANGCTAGAGCTAGGATTACGG 1181
consensus_6934#1 ------------------------------------------------------------
consensus_6934#2 ------------------------------------------------------------
consensus_6934#0 CGCATGTAAGCAATGCGAAACAAATCAAAAACATATACACGTACCGCCCTCTGGTTTCTG 1241
consensus_6934#1 ------------------------------------------------------------
consensus_6934#2 ------------------------------------------------------------
consensus_6934#0 GTCGTNCCCATCTCGTCTNGTTTTCNGTCAGTGAAATAGGGGGGAAAAACAGATGTAAAT 1301
consensus_6934#1 --------------------------
consensus_6934#2 --------------------------
consensus_6934#0 TCACGAACTCTAACATATAAAACCAT 1327
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||