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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6935#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 763 fasta sequence
[GGCCAGTTGTCGCACGAAGAAGAAGCAGCAAGGAAAGCGGAAAAAAGCAAGAATAAGTATGCGTAGTGCAATCTGTGATTTTTCTCTGCGCACAGCAGCATAAGCGTCGTAAGCGTGTGTGTGTGTGTGTGTTTGTGTGGAACGATTTGCTTGATTTGAAATCATCTCCTCCACCCGACAGCATCGCAAGCAGCGCACACACACAAAACCCCCCCTTCGAACTGTGATTATGTGATTATGATATGCGCTCGAATCGAATTGTTTTGTTTGTGAATGGAGAAGAAGAAGAGGAAGAAGAAGAATACGAAGCAGAAGAAAGCCAAATATGCCATCGAACCGGANAGCTGGGGAAAGGAAGTTCTCTTGGCGAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTTATTTGGCGGGCCCATCGCGTGTGGCTCCCCGTGGTCGTGGGTGGTGGTGGTGGTGGTGGTGGTACGTGGAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCACGGGCAGCCGCTATCTCNCTCTCTGCATCGTTATCATCATCGTAGTCGTCACCATCATCGCCTCCCGTNCCCACGTCGGTCGCAAAAGGGGTCGAGCGATGCGGGCAAANCCCTTCGTTCGGGGCTTCGNAAAGGGAATAACTCCCCCCCGGGCAGCCAGGCAGGACACCNAGGCATTGGAGGCNAAANCAATTGGGGGGAAGGANGGTTGAGCNNGCCGGATAGATCTGGGGTTCTCA]
[+] EMBL BX467601 [GGCCAGTTGTCGCACGAAGAAGAAGCAGCAAGGAAAGCGGAAAAAAGCAAGAATAAGTATGCGTAGTGCAATCTGTGATTTTTCTCTGCGCACAGCAGCATAAGCGTCGTAAGCGTGTGTGTGTGTGTGTGTTTGTGTGGAACGATTTGCTTGATTTGAAATCATCTCCTCCACCCGACAGCATCGCAAGCAGCGCACACACACAAAACCCCCCCTTCGAACTGTGATTATGTGATTATGATATGCGCTCGAATCGAATTGTTTTGTTTGTGAATGGAGAAGAAGAAGAGGAAGAAGAAGAATACGAAGCAGAAGAAAGCCAAATATGCCATCGAACCGGANAGCTGGGGAAAGGAAGTTCTCTTGGCGAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTTATTTGGCGGGCCCATCGCGTGTGGCTCCCCGTGGTCGTGGGTGGTGGTGGTGGTGGTGGTGGTACGTGGAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCACGGGCAGCCGCTATCTCNCTCTCTGCATCGTTATCATCATCGTAGTCGTCACCATCATCGCCTCCCGTNCCCACGTCGGTCGCAAAAGGGGTCGAGCGATGCGGGCAAANCCCTTCGTTCGGGGCTTCGNAAAGGGAATAACTCCCCCCCGGGCAGCCAGGCAGGACACCNAGGCATTGGAGGCNAAANCAATTGGGGGGAAGGANGGTTGAGCNNGCCGGATAGATCTGGGGTTCTCA]
consensusID : consensus_6935#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 641 fasta sequence
[CCGCGGACGCGTGGGTGTTTGTGTGGAACGATTTGCTTGATTTGAAATCATCTCCTCCACCCGACAGCATCGCAAGCAGCGCACACACACAAAACCCCCCCTTCGAACTGTGATTATGTGATTATGATATGCGCTCGAATCGAATTGTTTTGTTTGTGAATGGAGAAGAAGAAGAGGAAGAAGAAGAATACGAAGCAGAAGAAAGCCAAAATGCCATCGAACCGGAAGCTGGGGAAAGGAAGTTCTCTTGGGAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTTTTTGGCGGGCCCATCGCGTGTGGCTCCCCGTGGTCGTGGTGGGGTGGGTGGGTGGTTGTTGATTATGAAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCACGGGCAGCCGCTATCTCTCTCTCTGCATCGTTAATCATCATCGTAGTCGTCACCATCATCGCCTCCCCTCCCCACGTCGTCGCAAAAGGTCGGCGTGGGCAACCCTCGTCGGCTCGAAGGATACTCCCCCGGCAGCAGCAGCACCAGCTGAGCAAACATGGGGGAGGA-GTTGGGGGCGGTGATCTGCGTTCTTCAAATCATCCTGTGATCGTCCCTCCGTTTGTTTTCTCCGTTT]
[+] EMBL BM591247 [CCGCGGACGCGTGGGTGTTTGTGTGGAACGATTTGCTTGATTTGAAATCATCTCCTCCACCCGACAGCATCGCAAGCAGCGCACACACACAAAACCCCCCCTTCGAACTGTGATTATGTGATTATGATATGCGCTCGAATCGAATTGTTTTGTTTGTGAATGGAGAAGAAGAAGAGGAAGAAGAAGAATACGAAGCAGAAGAAAGCCAAAATGCCATCGAACCGGAAGCTGGGGAAAGGAAGTTCTCTTGGGAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTTTTTGGCGGGCCCATCGCGTGTGGCTCCCCGTGGTCGTGGTGGGGTGGGTGGGTGGTTGTTGATTATGAAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCACGGGCAGCCGCTATCTCTCTCTCTGCATCGTTAATCATCATCGTAGTCGTCACCATCATCGCCTCCCCTCCCCACGTCGTCGCAAAAGGTCGGCGTGGGCAACCCTCGTCGGCTCGAAGGATACTCCCCCGGCAGCAGCAGCACCAGCTGAGCAAACATGGGGGAGGA GTTGGGGGCGGTGATCTGCGTTC ]
[+] EMBL BM644034 [ ccgATCGTAGTCGTCACCATCATCGCCTCCCCTCCCCACGTCGTCGCAAAAGGTCGGCGTGGGCAACCCTCGTCGGCTCGAAGGATACTCCCCCGGCAGCAG CAGCTGAGCAAAAATGGGGGAGGAGGTTGGGGGCGGTGATCTGCGTTCTTCAAATCATCCTGTGATCGTCCCTCCGTTTGTTTTCTCCGTTT]
consensusID : consensus_6935#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence
[CAGAATCGCACGAGGTNATAGTGCAATCTGTGATTTTTCTCTGCGCACAGCAGCTATAAGCGTCGTAAGTGTGTGTGTGTGTGTTTGTGTGGAACGATTTGCTTGATTTGAAATCATCTCCTCCACCCGACAGCATCGCAAGCAGCGCGCACACACACACACAACACCCCCCCCCTTCGAACTGTGATTATGTGATTATGATATGCGCTCGAATCGAATTGTTTTGTTTGTGAATGAAGAAGAAGAAGAGGAATAAGAAGAATACGAAGCAGAAGAAAGCCAAAATGCCATCGAACCGGAAGCTGGAGAAAGGAAGTTCTCTTGGGAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTTTTTGGCGGGCCCATCGCGTGTGGCTCCCCGTGGTCGTGGGTGGTGGTGGTGGTGGTGGTGGTAGTGGAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCA]
[+] EMBL AL697015 [CAGAATCGCACGAGGTNATAGTGCAATCTGTGATTTTTCTCTGCGCACAGCAGCTATAAGCGTCGTAAGTGTGTGTGTGTGTGTTTGTGTGGAACGATTTGCTTGATTTGAAATCATCTCCTCCACCCGACAGCATCGCAAGCAGCGCGCACACACACACACAACACCCCCCCCCTTCGAACTGTGATTATGTGATTATGATATGCGCTCGAATCGAATTGTTTTGTTTGTGAATGAAGAAGAAGAAGAGGAATAAGAAGAATACGAAGCAGAAGAAAGCCAAAATGCCATCGAACCGGAAGCTGGAGAAAGGAAGTTCTCTTGGGAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTTTTTGGCGGGCCCATCGCGTGTGGCTCCCCGTGGTCGTGGGTGGTGGTGGTGGTGGTGGTGGTAGTGGAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCA]
consensusID : consensus_6935#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence
[ATCCGCACGAGNGTCAAAATGCCATCGAACCGGAAGCTGGGGAAAGGAAGTTCTCCTGAGAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTTTTTGGCGGGCCCATCGCGTGTGGCTCCTCGTGGTCGTGGGTGGTGGTGGTGGTAGTGGAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCACGGGCAGCCGCTATCTCTCTCTCTGCATCGTTAATCATCATCGTAGTCGTCACCATCATCGCCTCCCCTCCCCACGTCGTCGCAAAAGGTCGGCGTGGGCAACCCTCGTCGGCTCGAAGGATACTCCCCCGGCAGCAGCAGCACCAGCTGAGCAAACATGGGGGANGAGGTTGGGGGCGGTGATCTGCGTTCTTCAAATCATCCTGCTGATCGTCCCTCCGGTTTGTTTTCTCCGNTTTGGACAAACCCCCGGCTCATTGTCGGCTCATAC]
[+] EMBL BX466091 [ATCCGCACGAGNGTCAAAATGCCATCGAACCGGAAGCTGGGGAAAGGAAGTTCTCCTGAGAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTTTTTGGCGGGCCCATCGCGTGTGGCTCCTCGTGGTCGTGGGTGGTGGTGGTGGTAGTGGAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCACGGGCAGCCGCTATCTCTCTCTCTGCATCGTTAATCATCATCGTAGTCGTCACCATCATCGCCTCCCCTCCCCACGTCGTCGCAAAAGGTCGGCGTGGGCAACCCTCGTCGGCTCGAAGGATACTCCCCCGGCAGCAGCAGCACCAGCTGAGCAAACATGGGGGANGAGGTTGGGGGCGGTGATCTGCGTTCTTCAAATCATCCTGCTGATCGTCCCTCCGGTTTGTTTTCTCCGNTTTGGACAAACCCCCGGCTCATTGTCGGCTCATAC]
consensusID : consensus_6935#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 411 fasta sequence
[CGCCCGAGGTTAAATTTGAAATCATCTCCTCCACCCGACAGCATCGCAAGCAGCGCACACGCACACACAAAACCCCCCCCTTCGAACTGTGATTATGTGATTATGATATGCGCTCGAATCGAATTGTTTGTTTGTGAATGAAGAAGAAGAGGAAGAAGAAGAAGAATACGAAGCAGAAGAAAGCCAAAATGCCATCGAACCGGAAGCTGGGGAAAGGAAGTTCTCCTGAGAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTTTTTGGCGGGCCCATCGCGTGTGGCTCCTCGTGGTCGTGGGTGGTGGTGGTGGTACGTGGAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCACGGGCAGCCGCTATCTCTCTCTCTGCATCGTTAATC]
[+] EMBL AL933528 [CGCCCGAGGTTAAATTTGAAATCATCTCCTCCACCCGACAGCATCGCAAGCAGCGCACACGCACACACAAAACCCCCCCCTTCGAACTGTGATTATGTGATTATGATATGCGCTCGAATCGAATTGTTTGTTTGTGAATGAAGAAGAAGAGGAAGAAGAAGAAGAATACGAAGCAGAAGAAAGCCAAAATGCCATCGAACCGGAAGCTGGGGAAAGGAAGTTCTCCTGAGAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTTTTTGGCGGGCCCATCGCGTGTGGCTCCTCGTGGTCGTGGGTGGTGGTGGTGGTACGTGGAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCACGGGCAGCCGCTATCTCTCTCTCTGCATCGTTAATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6935#0 GGCCAGTTGTCGCACGAAGAAGAAGCAGCAAGGAAAGCGGAAAAAAGCAAGAATAAGTAT 60
consensus_6935#2 ---------------------------------------------CAGAATCGCACGAGG 15
consensus_6935#4 ------------------------------------------------------------
consensus_6935#1 ------------------------------------------------------------
consensus_6935#3 ------------------------------------------------------------
consensus_6935#0 GCGTAGTGCAATCTGTGATTTTTCTCTGCGCACAGCAGC-ATAAGCGTCGTAAGCGTGTG 119
consensus_6935#2 TNATAGTGCAATCTGTGATTTTTCTCTGCGCACAGCAGCTATAAGCGTCGTAAG----TG 71
consensus_6935#4 ------------------------------------------------------------
consensus_6935#1 -------------------------------------------------------CCGCG 5
consensus_6935#3 ------------------------------------------------------------
consensus_6935#0 TGTGTGTGTGTGTTTGTGTGGAACGATTTGCTTGATTTGAAATCATCTCCTCCACCCGAC 179
consensus_6935#2 TGTGTGTGTGTGTTTGTGTGGAACGATTTGCTTGATTTGAAATCATCTCCTCCACCCGAC 131
consensus_6935#4 -------------------CGCCCGAG--GTTAAATTTGAAATCATCTCCTCCACCCGAC 39
consensus_6935#1 GACGCGTGGGTGTTTGTGTGGAACGATTTGCTTGATTTGAAATCATCTCCTCCACCCGAC 65
consensus_6935#3 ------------------------------------------------------------
consensus_6935#0 AGCATCGCAAGCAGCGCACACACACAAAA--------CCCCCCCTTCGAACTGTGATTAT 231
consensus_6935#2 AGCATCGCAAGCAGCGCGCACACACACACACAACACCCCCCCCCTTCGAACTGTGATTAT 191
consensus_6935#4 AGCATCGCAAGCAGCGCACACGCACACACAAAAC---CCCCCCCTTCGAACTGTGATTAT 96
consensus_6935#1 AGCATCGCAAGCAGCGCACACACACAAAA--------CCCCCCCTTCGAACTGTGATTAT 117
consensus_6935#3 ------------------------------------------------------------
consensus_6935#0 GTGATTATGATATGCGCTCGAATCGAATTGTTTTGTTTGTGAATGGAGAAGAAGAAGAGG 291
consensus_6935#2 GTGATTATGATATGCGCTCGAATCGAATTGTTTTGTTTGTGAATGAAGAAGAAGAAGAGG 251
consensus_6935#4 GTGATTATGATATGCGCTCGAATCGAATTGTTT-GTTTGTGAATGAAGAAGAAGAGGAAG 155
consensus_6935#1 GTGATTATGATATGCGCTCGAATCGAATTGTTTTGTTTGTGAATGGAGAAGAAGAAGAGG 177
consensus_6935#3 ------------------------------------------------------------
consensus_6935#0 AAGAAGAAGAATACGAAGCAGAAGAAAGCCAAATATGCCATCGAACCGGANAGCTGGGGA 351
consensus_6935#2 AATAAGAAGAATACGAAGCAGAAGAAAGCCAAA-ATGCCATCGAACCGGAA-GCTGGAGA 309
consensus_6935#4 AAGAAGAAGAATACGAAGCAGAAGAAAGCCAAA-ATGCCATCGAACCGGAA-GCTGGGGA 213
consensus_6935#1 AAGAAGAAGAATACGAAGCAGAAGAAAGCCAAA-ATGCCATCGAACCGGAA-GCTGGGGA 235
consensus_6935#3 ---------------ATCCGCACGAGNGTCAAA-ATGCCATCGAACCGGAA-GCTGGGGA 43
* * * ** * **** **************** ***** **
consensus_6935#0 AAGGAAGTTCTCTTGGCGAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTTAT 411
consensus_6935#2 AAGGAAGTTCTCTTGG-GAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTT-T 367
consensus_6935#4 AAGGAAGTTCTCCTGA-GAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTT-T 271
consensus_6935#1 AAGGAAGTTCTCTTGG-GAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTT-T 293
consensus_6935#3 AAGGAAGTTCTCCTGA-GAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTT-T 101
************ ** ***************************************** *
consensus_6935#0 TTGGCGGGCCCATCGCGTGTGGCTCCCCGTGGTCGTGGGTGGTGGTGGTGGTGGTGGTGG 471
consensus_6935#2 TTGGCGGGCCCATCGCGTGTGGCTCCCCGTGGTCGTGGGTGGTGGTGGTGGTGGTGGTGG 427
consensus_6935#4 TTGGCGGGCCCATCGCGTGTGGCTCCTCGTGGTCGTGGGTGGTGGTGGTGGT-------- 323
consensus_6935#1 TTGGCGGGCCCATCGCGTGTGGCTCCCCGTGGTCGTGGTGGGGTGGGTGGGTGGTTGTTG 353
consensus_6935#3 TTGGCGGGCCCATCGCGTGTGGCTCCTCGTGGTCGTGGGTGGTGGTGGTGGTA------- 154
************************** *********** ** * * ***
consensus_6935#0 TACGTGGAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCACGGGCAG 531
consensus_6935#2 TA-GTGGAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCA------- 479
consensus_6935#4 -ACGTGGAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCACGGGCAG 382
consensus_6935#1 ATTATGAAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCACGGGCAG 413
consensus_6935#3 ---GTGGAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCACGGGCAG 211
** **********************************************
consensus_6935#0 CCGCTATCTCNCTCTCTGCATCGTTATCA-TCATCGTAGTCGTCACCATCATCGCCTCCC 590
consensus_6935#2 ------------------------------------------------------------
consensus_6935#4 CCGCTATCTCTCTCTCTGCATCGTTAATC------------------------------- 411
consensus_6935#1 CCGCTATCTCTCTCTCTGCATCGTTAATCATCATCGTAGTCGTCACCATCATCGCCTCCC 473
consensus_6935#3 CCGCTATCTCTCTCTCTGCATCGTTAATCATCATCGTAGTCGTCACCATCATCGCCTCCC 271
consensus_6935#0 GTNCCCACGTCGGTCGCAAAAGGGGTCGAGCGATGCGGGCAAANCCCTTCGTTCGGGGCT 650
consensus_6935#2 ------------------------------------------------------------
consensus_6935#4 ------------------------------------------------------------
consensus_6935#1 CTCCCCACGTCGTCGCAAAAGGTCGGCGTGGGCAACCCTCG--TCGGCTCGAAGGATACT 531
consensus_6935#3 CTCCCCACGTCGTCGCAAAAGGTCGGCGTGGGCAACCCTCGTCGGCTCGAAGGATACTCC 331
consensus_6935#0 TCGNAAAGGGAATAACTCCCCCCCGGGCAGCCAGGCAGGACACCNAGGCATTGGAGGCNA 710
consensus_6935#2 ------------------------------------------------------------
consensus_6935#4 ------------------------------------------------------------
consensus_6935#1 CCCCCGGCAGCAGCAGCACCAGCTGAGCAAACATGGGGGAGGAGTTGGGGGCGGTGATCT 591
consensus_6935#3 CCCGGCAGCAGCAGCACCAGCTGAGCAAACATGGGGGANGAGGTTGGGGGCGGTGATCTG 391
consensus_6935#0 AANCAATTGGGGGGAAGGANGGTTGAGCNNGCCGGATAGATCTGGGGTTCTCA------- 763
consensus_6935#2 ------------------------------------------------------------
consensus_6935#4 ------------------------------------------------------------
consensus_6935#1 GCGTTCTTCAAATCATCCTGTGATCGTCCCTCCGTTTGTTTTCTCCGTTT---------- 641
consensus_6935#3 CGTTCTTCAAATCATCCTGCTGATCGTCCCTCCGGTTTGTTTTCTCCGNTTTGGACAAAC 451
consensus_6935#0 ------------------------
consensus_6935#2 ------------------------
consensus_6935#4 ------------------------
consensus_6935#1 ------------------------
consensus_6935#3 CCCCGGCTCATTGTCGGCTCATAC 475
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||