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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6941#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 909 fasta sequence
[CCGAACGGCTCAAAGAAGTGCTCCTCGTATGCGGCGAGCGGCGAGGAAGCGACGAATCGCAAACCGCCACCCCTGATACCGCTCGACAAGATCGATTCACTGGGCGACGGTGGCAACGCTAGCTTCCTGCAAGAGCATTTGTTTCCAATTTCCATTGCTGCGGGGGCTTTGGTTATAGCTGTAGCAGTAATTTTAGTGATATGCATTGGTCGGCGTCGGGCAAGCTCGGAAACGCAACACCAACACCACCACCAAACCATGACAGCGCAAACGGCTGGCTCGCGACAGGGCACGTTCCGTTCGGCGTCGCTCAATCGCTGCCCGTTCACGCCGGCCGACCGGCGCATCATCTCAAACGCACTGAGCTGGATCAGGGAAGCGTACGGGCCGGACGTTTGGAGCAAAATTAACACACCGATGCAGGAGCTGCTTGCACAGAACGGTGGCAGCGGTGTCGTCGAGGAGAAGGATAAGGTGCGGCTGATCGGCACCATCCTCGACAGCCTGAAGCGCCACGAAATCGGTGGCACACAGATCGTCGCCCTCAATGACGTTCTGTTCCGGCAACTCGGACCACCGGCCGTAGCAGCAGCAGCGCCGGAGCTGGCCGAACGCGAACGACCAAACAGTGATAACAATGACGAGCTGCTCGGACACATCTACGACGAGCTGCAACCGAACAGGGGAGCGCCGCGGCTACTCGGCGACTACGCGGCACCGCTCGATCACGGTGCGGTGACCGTCGTGCCCGAGGGCATCTATTCCGAGCCCGTCCTGCACGGGCAGCGCTTGCCGCAAGCACACCGAGGTGACAATCGAAACCTGATCAGCCCGTACGCGATTGGCGATGCTACGGTGCAGCGCAATCCGGCCGGCGCTGAGGGCAACCTGCCGGACGTGATACGTCCC]
[+] EMBL BM623699 [CCGAACGGCTCAAAGAAGTGCTCCTCGTATGCGGCGAGCGGCGAGGAAGCGACGAATCGCAAACCGCCACCCCTGATACCGCTCGACAAGATCGATTCACTGGGCGACGGTGGCAACGCTAGCTTCCTGCAAGAGCATTTGTTTCCAATTTCCATTGCTGCGGGGGCTTTGGTTATAGCTGTAGCAGTAATTTTAGTGATATGCATTGGTCGGCGTCGGGCAAGCTCGGAAACGCAACACCAACACCACCACCAAACCATGACAGCGCAAACGGCTGGCTCGCGACAGGGCACGTTCCGTTCGGCGTCGCTCAATCGCTGCCCGTTCACGCCGGCCGACCGGCGCATCATCTCAAACGCACTGAGCTGGATCAGGGAAGCGTACGGGCCGGACGTTTGGAGCAAAATTAACACACCGATGCAGGAGCTGCTTGCCCAGAACGGTGGCAGTGGCGTCGTCGAGGAGAAGGATAAGGTGCGGCTGATCGGCACCATCCTCGACAGCCTGAAGCGCCACGAAATCGGTGGCACACAGATCGTCGCCCTCAATGACGTTCTGTTCCGGCAACTCGGACCACCGGCCGTAGCAGCAGCAGCGCCGGAGCTGGCCGAACGCGAACGACCAAACAGTGATAACAATGACGAGCTGCTCGGACACATCTACGACGAGCTGCAA CGAA ]
[+] EMBL BX615159 [ GCTTCCTGCAGGAACATGTGTTTCCAATTTCCATTGCTGCGGGGGCTTTGGTTATAGCTGTAGCAGTAATTTTAGTGATATGCATTGGTCGGCGCCGGGCAAGCTCGGAAACGCAACACCAACACCACCACCAAACCATGACAGCGCAAACGGCCGGCTCGCGACAGGGCACGTTCCGTTCGGCGTCGCTCAATCGCTGCCCGTTCACGCCGGCCGACCGGCGCATTATCTCAAACGCACTGAGCTGGATCAGGGAAGCGTACGGGCCGGACGTTTGGAGCAAAATTAACACACCGATGCAGGAGCTGCTTGCACAGAACGGTGGCAGCGGTGTCGTCGAGGAGAAGGATAAGGTGCGGCTGATCGGCACCATCCTCGACAGCCTGAAGCGCCACGAAATCGGTGGCACACAGATCGTCGCCCTCAATGACGTTCTGTTCCGGCAACTCGGACCACCGGCCGTAGCAGCAGCAGCGCCGGAGCTGGCCGAACGCGAACGACCAAACAGTGATAACAATGACGAGCTGCTCGGACACATCTACGACGAGCTGCAACCGAACAGGGGAGCGCCGCGGCTACTCGGCGACTACGCGGCACCGCTCGATCACGGTGCGGTGACCGTCGTGCCCGAGGGCATCTATTCCGAGCCCGTCCTGCACGGGCAGCGCTTGCCGCAAGCACACCGAGGTGACAATCGAAACCTGATCAGCCCGTACGCGATTGGCGATGCTACGGTGCAGCGCAATCCGGCCGGCGCTGAGGGCAACCTGCCGGACGTGATACGTCCC]
[+] EMBL BX603616 [ TACGGGCCGGACGTTTGGAGCAAAATTAACACACCGATGCAGGAGCTGCTTGCACAGAACGGTGGCAGCGGTGTCGTCGAGGAGAAGGATAAGGTGCGGCTGATCGGCACCATCCTCGACAGCCTGAAGCGCCACGAAATCGGTGGCACACAGATCGTCGCCCTCAATGACGTTCTGTTCCGGCAACTCGGACCACCGGCCGTAGCAGCAGCAGCGCCGGAGCTGGCCGAACGCGAACGACCAAACAGTGATAACAATGACGAGCTGCTCGGACACATCTACGACGAGCTGCAACCGAACAGGGGAGCGCCGCGGCTACTCGGCGACTACGCGGCACCGCTCGATCACGGTGCGGTGACCGTCGTGCCCGAGGGCATCTATTCCGAGCCCGTCCTGCACGGG ]
[+] EMBL BX621794 [ CGGCACCATCCTCNACAGCCTGAAGCGCCACGAAATCGGTGGCACACAGATCGTCGCCCTCAATGACGTNCTGTTNCGGCAACTCGGACCACCGGNCGTAGCAGCAGCAGCGCCGGAGCTGGCCGAACGCGAACGACCAAACAGTGATAACAATGACGAGCTGCTCNGACACATCTACGACNAGCTGCAACCGAACAGGGGAGCGCCGCGGCTGCTCGGNGACTACGCGGNACCGCTCGATCACGGTG ]
consensusID : consensus_6941#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 796 fasta sequence
[CCCCGAGGTTTACACCGGCCGTAGCAGCAGCAGCGCCGGAGCTGGCCGAACGCGAACGACCAAACAGTGATAACAATGACGAGCTGCTCGGACACATCTACGACGAGCTGCAACCGAACAGGGGAGCGCCGCGGCTACTCGGCGACTACGCGGCACCTCTCGATCACGGTGCGGTGACCGTCGTGCCCGAGGGCATCTATTCCGAGCCCGTCCTGCACGGGCAGCGCTTGCCGCAAGCACACCGAGGTGACAATCGAAACCTGATCAGCCCGTACGCGATTGGCGATGCTACGGTGCAGCGCAATCCGGCCGGCGCTGAGGGCAACCTGCCGGACGTGATACGTCCCACTGGGCACGCGTGGAAAGCTAACGCCGAGGAGGACGACCTGGACGATGAGGATGAGGACGACATCGATGGGGAAGCGGAGCGTAAAACGATGCTTCGCCACCGATGATGGATGGCGGCAGCGCTGGGGCGCCCACGTACGCAATATCGCTGAAGCAGCTGAAGCGGCCC--TAGGGGCAACACACCAACTCCCACTCCGCCACCCCCAGTGCCGTCGGGTAGTGGCGGGGAGGACCAACCGGACGGTAACGATGGTAACCGGTCGGAACATTCCGGCAGTAGCATGCAAACGGTTCGCATCGAAGATATGACCCTGGCGGATGACGACGCCCGTGAGCAACGGTAACATATGCTGCACAGAGAGAGAGAGAGTGCGAGCGAGCGAGAGAAAGTGTGTATCTGTGTACTAGAGCAATAAAAACGTCTCATACTTTTTAAAGTCAAAAAAAA]
[+] EMBL AL692190 [CCCCGAGGTTTACACCGGCCGTAGCAGCAGCAGCGCCGGAGCTGGCCGAACGCGAACGACCAAACAGTGATAACAATGACGAGCTGCTCGGACACATCTACGACGAGCTGCAACCGAACAGGGGAGCGCCGCGGCTACTCGGCGACTACGCGGCACCTCTCGATCACGGTGCGGTGACCGTCGTGCCCGAGGGCATCTATTCCGAGCCCGTCCTGCACGGGCAGCGCTTGCCGCAAGCACACCGAGGTGACAATCGAAACCTGATCAGCCCGTACGCGATTGGCGATGCTACGGTGCAGCGCAATCCGGCCGGCGCTGAGGGCAACCTGCCGGACGTGATACGTCCCACTGGGCACGCGTGGAAAGCTAACGCCGAGGAGGACGACCTGGACGATGAGGATGAGGACGACATCGATGGGGAAGCGGAGCGTAAAACGATGCTTCGCCACCGATGATGGATGGCGGCAGCGCTGGGGCGCCCACGTACGCAATATCGCTGAAGCAGCTGAAGCGGCCC TAGGGGCAACACACCAACTCCCA ]
[-] EMBL AGA283327 [ CGCCCACGAACGCAATATCGCTGAAGCAGCTGAAGCGGCCCCATAGGGGCAACACACCACCTCCCACTCCGCCACCCCCAGTGCCGTCGGGTAGTGGCGGGGAGGACCAACCGGACGGTAACGATGGTAACCGGTCGGAACATTCCGGCAGTAGCATGCAAACGGTTCGCATCGAAGATATGACCCTGGCGGATGACGACGCCCGTGAGCAACGGTAACATATGCTGCACAGAGAGAGAGAGAGTGCGAGCGAGCGAGAGAAAGTGTGTATCTGTGTACTAGAGCAATAAAAACGTCTCATACTTTTTAAAGTCAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6941#0 CCGAACGGCTCAAAGAAGTGCTCCTCGTATGCGGCGAGCGGCGAGGAAGC-GACGAATCG 59
consensus_6941#1 --------CCCCGAGGTTTACACCGGCCGTAGCAGCAGCAGCGCCGGAGCTGGCCGAACG 52
* * ** * * ** * *** *** * *** * * * **
consensus_6941#0 CAAACCGCCACCCC-TGATACCGCTCGACAAGATCGATTCACTGGGCGACGGTGGCAACG 118
consensus_6941#1 CGAACGACCAAACAGTGATAACAAT-GACGAGCTGCTCGGACACATCTACGACG--AGCT 109
* *** *** * ***** * * *** ** * ** * *** * * *
consensus_6941#0 CTAGCTTCCTGCAAGAGCATTTGTTTCCAATTTCCATTGCTGCGGGGGCTTTGGTTATAG 178
consensus_6941#1 GCAACCGAACAGGGGAGCGCC-GCGGCTACTCGGCGACTACGCGGCACCTCTCGATCACG 168
* * **** * * * * * **** ** * * * *
consensus_6941#0 CTGTAGCAGTAATTTTAGTGATATGCAT-TGGTCGGCGTCGGGCAAGCTCGGA-AACGC- 235
consensus_6941#1 GTGCGGTGACCGTCGTGCCCGAGGGCATCTATTCCGAGCCCGTCCTGCACGGGCAGCGCT 228
** * * * **** * ** * * * * * ** *** * ***
consensus_6941#0 -AACACCAACACCACCACCAAACCATGACAGCGCAAACGGCTGGCTCGCGACAGGGCACG 294
consensus_6941#1 TGCCGCAAGCACACCGAGGTGACAATCGAAACCTGATCAGCCCGTACGCGATTGGCGATG 288
* * * *** * * ** ** * * * * ** * ***** ** * *
consensus_6941#0 TTCCGTT-CGGCGTCGCTCAATCGCTGCCCGTTCACGCCGGCCGACCG----GCGCATCA 349
consensus_6941#1 CTACGGTGCAGCGCAATCCGGCCGGCGCTGAGGGCAACCTGCCGGACGTGATACGTCCCA 348
* ** * * *** * ** ** ** **** ** ** **
consensus_6941#0 TCTCAAACGCACTGAGCTGGATCAGGGAAGCGTACGGGCCGGACGTTTGGAGCAAAATTA 409
consensus_6941#1 CTGGGCACGCGTGGAAAGCTAACGCCGAGGAGGACGACCTGGACGATGAGGATGAGGACG 408
**** ** * * ** * * *** * ***** * * *
consensus_6941#0 ACACACCGATGCAGGAGCTGCTTGCACAGAACGGTGGCAGCGGTGTCGTCGAGGAGAAGG 469
consensus_6941#1 ACA--TCGATGGGGAAGCGGA--GCGTAAAACGATG----CTTCGCCACCGATGATGGAT 460
*** ***** * *** * ** * **** ** * * * *** **
consensus_6941#0 ATAAGGTGCGGCTGATCGGCACCATCCTCGACAGC-CTGAAGCGCCACGAAATCGGTGGC 528
consensus_6941#1 GGCGGCAGCGCTGGGGCGCCCACGTACGCAATATCGCTGAAGCAGC-TGAA----GCGGC 515
* *** * ** * * * * * * * * ******* * *** * ***
consensus_6941#0 ACACAGATCGTCGCCCTCAATGACGTTCTGTTCCGGCAACTCGGACCACCGGCCGTAGCA 588
consensus_6941#1 CCTAGGGGCAACACAC-CAAC----TCCCACTCCGCCA-CCCCCAGTGCCGTCGG--GTA 567
* * * * * * *** * * **** ** * * * *** * * * *
consensus_6941#0 GCAGCAGCGCCGGAGCTGGCCGAACGCGAACGAC--CAAACAGTGATAACAATGACG-AG 645
consensus_6941#1 GTGGCGGGG--AGGACCAACCGGACGGTAACGATGGTAACCGGTCGGAACATTCCGGCAG 625
* ** * * * * *** *** ***** ** * ** **** * * **
consensus_6941#0 CTGCTCGGACACA-TCTACGACGA-GCTGCAACCGAACAGGGGAGCGCCGCGGCTACTCG 703
consensus_6941#1 TAGCATGCAAACGGTTCGCATCGAAGATATGACCCTGGCGGATGACGACGCCCGTGAGCA 685
** * * ** * * *** * * *** ** ** *** * *
consensus_6941#0 GCGACTACGCGGCACCGCTCGATCACGGTGCGGTGACCGTCGTGCCCGAGGGCATCTATT 763
consensus_6941#1 ACGGTAACATA-TGCTGCACAGAGAGAGAGAGAGTGCGAGCGAGCGAGAGAAAGTGTGTA 744
** ** * ** * * * * * * ** ** *** * * *
consensus_6941#0 CCGAGCCCGTCCTGCACGGGCAGCGCTTGCCGCAAGCACACCGAGGTGACAATCGAAACC 823
consensus_6941#1 TCTGTGTACTAGAGCAATAAAAACGTCT----CATACTTTTTAAAGTCAAAAAAAA---- 796
* * *** * ** * ** * * ** * ** *
consensus_6941#0 TGATCAGCCCGTACGCGATTGGCGATGCTACGGTGCAGCGCAATCCGGCCGGCGCTGAGG 883
consensus_6941#1 ------------------------------------------------------------
consensus_6941#0 GCAACCTGCCGGACGTGATACGTCCC 909
consensus_6941#1 --------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||