cluster # 6949

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Anopheles gambiae
cluster # 6949 cluster # 6949 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6949#0 length = 984 sequences # 4

consensus_6949#1 length = 666 sequences # 2

consensusID : consensus_6949#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 984
fasta sequence

                              [CCGCCCACGCGTCCGAAAAAAACTACACCGCTCAGACAGCAATTACGGATTCTTGGCCAGCCGTCCAACAGACTCGCAGGAGTGAAATAAATAGCTGAAATGTGTTCCAAACGATGTTGATCGTGGAAGTATATCACCACAGCCGTGCGCACTACGGATCGAACCGTTTAATCGCCACATAGGCACTGATTTTTCCCATAGACTACTGTTGAAGGTACCATACGCAATCGCCCTTGCGCTGCTGGATCGCGGTGATATCGACCAATTCATTCCCGCCCTATTGTCTACGTCAGTACCTTAAAAGTTTTCCCTACCGGGCTTATCAGTTGTGTGGTTCGTAAAAAGGAAAAAAAAGAAGCTTACTACAATGCTACCATTAACGCATAAAGATTCACGTGGATGCGGCTACCGGATACGGGAAAAGTTCAACAGTTGGAGCCGGCTCATTCTGTCGGATCGCAATTCGCGTAATTTATTTCTATTTCTGCTGCTTAATTTAAGCTTTGCCTTCGTCGAACTAATGTATGGCATATGGACGAACAGTTTAGGTTTGATCTCCGATTCGTTCCACATGTTCTTCGACT-GTACCGGGCTGTTGGCTGGTTTGGCTGCGTCCGTTATTACCAAATGGCGTGCAAACGAAAAGTATT-CCTACGGGTACGTT-CGTGCTGAAGTGC-TCGCC-GGGTTTGTCAACAGTCTCTTTTTGCTGTTTATCGCCTTCTTCATTATGTCCGAGGCAGTAGAGCGCGCTATAGAGCCACCGGAAGTGAAACACGAACGATTGTTCGTCGTATCGGTGCTCGGACTGTTGGTAAACTTGGTCGGTATCTATGCATTCCAGCACGGTGGAGCACACGGACATTCGCATGGCGGCGGTGGTGGCCACGGGCATTCGCACGGCGGCGG-AGGTGGTGGAAGTCATGGACATTCCCATGGGGGGTGGTATGAATCATCACAGTCACGATACTCACAGCCTGCTGTCCA]

[+] EMBL BM580931             [CCGCCCACGCGTCCGAAAAAAACTACACCGCTCAGACAGCAATTACGGATTCTTGGCCAGCCGTCCAACAGACTCGCAGGAGTGAAATAAATAGCTGAAATGTGTTCCAAACGATGTTGATCGTGGAAGTATATCACCACAGCCGTGCGCACTACGGATCGAACCGTTTAATCGCCACATAGGCACTGATTTTTCCCATAGACTACTGTTGAAGGTACCATACGCAATCGCCCTTGCGCTGCTGGATCGCGGTGATATCGACCAATTCATTCCCGCCCTATTGTCTACGTCAGTACCTTAAAAGTTTTCCCTACCGGGCTTATCAGTTGTGTGGTTCGTAAAAAGGAAAAAAAAGAAGCTTACTACAATGCTACCATTAACGCATAAAGATTCACGTGGATGCGGCTACCGGATACGGGAAAAGTTCAACAGTTGGAGCCGGCTCATTCTGTCGGATCGCAATTCGCGTAATTTATTTCTATTTCTGCTGCTTAATTTAAGCTTTGCCTTCGTCGAACTAATGTATGGCATATGGACGAACAGTTTAGGTTTGATCTCCGATTCGTTCCACATGTTCTTCGACT GTACCGGGCTGTTGGCTGGTTTGGCTGCGTCCGTTATTACCAAATGGCGTGCAAACGAAAAGTATT CCTACGGGTACGTT CGTGCTGAAGTGC TCGCCGGGGTTTGT                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM581410             [                                  ccgAGCAATTACGGATTCTTGGCCAGCCGTCCAACAGACTCGCAGGAGTGAAATAAATAGCTGAAATGTGTTCCAAACGATGTTGATCGTGGAAGTATATCACCACAGCCGTGCGCACTACGGATCGAACCGTTTAATCGCCACATAGGCACTGATTTTTCCCATAGACTACTGTTGAAGGTACCATACGCAATCGCCCTTGCGCTGCTGGATCGCGGTGATATCGACCAATTCATTCCCGCCCTATTGTCTACGTCAGTACCTTAAAAGTTTTCCCTACCGGGCTTATCAGTTGTGTGGTTCGTAAAAAGGAAAAAAAAGAAGCTTACTACAATGCTACCATTAACGCATAAAGATTCACGTGGATGCGGCTACCGGATACGGGAAAAGTTCAACAGTTGGAGCCGGCTCATTCTGTCGGATCGCAATTCGCGTAATTTATTTCTATTTCTGCTGCTTAATTTAAGCTTTGCCTTCGTCGAACTAATGTATGGCATATGGACGAACAGTTTAGGTTTGATCTCCGATTCGTTCCACATGTTCTTCGACTGGTACCGGGCTGTTGGCTGGTTTGGCTGCGTCCGTTATTACCAAATGGCGTGCAAACGAAAAGTATTCCCTACGGGTACGTTCCGTGCTGAAGTGCTTCGCC GGGTTTGTCAACAGTCTCTTTTTGCTG                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM606576             [                                                                                                                                                                                                                                                               ccgCGACCAATTCATTCCCGCCCTATTGTCTACGTCAGTACCTTAAAAGTTTTCCCTACCGGGCTTATCAGTTGTGTGGTTCGTAAAAAGAAAAAAAAAGAAGCTTACTACAATGCTACCATTAACGCATAAAGATTCACGTGGATGCGGCTACCGGATACGGGAAAAGTTCAACAGTTGGAGCCGGCTCATTCTGTCGGATCGCAATTCGCGTAATTTATTTCTATTTCTGCTGCTTAATTTAAGCTTTGCCTTCGTCGAACTAATGTATGGCATATGGACGAACAGTTTAGGTTTGATCTCCGATTCGTTCCACATGTTCTTCGACT GTACCGGGCTGTTGGCCGGTTTGGCTGCGTCCGTTATTACCAAATGGCGTGCAAACGAAAAGTATT CCTACGGGTACGTT CGTGCTGAAGTGC TCGCC GGGTTTGTCAACAGTCTCTTTTTGCTGTTTATCGCCTTCTTCATTATGTCCGAGGCAGTAGAGCGCGCTATAGAGCCACCGGAAGTGAAACACGAACGATTGTTCGTCGTATCGGTGCTCGGACTGTTGGTAAACTTGGTCGGTATCTATGCATTCCAGCACGGTGGAGCACACGGACATTCGCATGGCGGCGGTGGTGGCCACGGGCATTCGCACGGCGGCGG AGGTGGTGGAAGTCAT                                                              ]
[+] EMBL BM600916             [                                                                                                                                                                                                                                                                                                                                                                 AGAAGCTTACTACAATGCTACCATTAACGCATAAAGATTCACGTGGATGCGGCTACCGGATACGGGAAAAGTTCAACAGTTGGAGCCGGCTCATTCTGTCGGATCGCAATTCGCGTAATTTATTTCTATTTCTGCTGCTTAATTTAAGCTTTGCCTTCGTCGAACTAATGTATGGCATATGGACGAACAGTTTAGGTTTGATCTCCGATTCGTTCCACATGTTCTTCGACT GTACCGGGCTGTTGGCCGGTTTGGCTGCGTCCGTTATTACCAAATGGCGTGCAAACGAAAAGTATT CCTACGGGTACGTT CGTGCTGAAGTGC TCGCC GGGTTTGTCAACAGTCTCTTTTTGCTGTTTATCGCCTTCTTCATTATGTCCGAGGCAGTAGAGCGCGCTATAGAGCCACCGGAAGTGAAACACGAACGATTGTTCGTCGTATCGGTGCTCGGACTGTTGGTAAACTTGGTCGGTATCTATGCATTCCAGCACGGTGGAGCACACGGACATTCGCATGGCGGCGGTGGTGGCCACGGGCATTCGCACGGCGGCGGAAGGTGGTGGAAATCATGGACATTCCCATGGGGGGTGGTATGAATCATCACAGTCACGATACTCACAGCCTGCTGTCCA]




>consensus_6949#0
CCGCCCACGCGTCCGAAAAAAACTACACCGCTCAGACAGCAATTACGGATTCTTGGCCAG
CCGTCCAACAGACTCGCAGGAGTGAAATAAATAGCTGAAATGTGTTCCAAACGATGTTGA
TCGTGGAAGTATATCACCACAGCCGTGCGCACTACGGATCGAACCGTTTAATCGCCACAT
AGGCACTGATTTTTCCCATAGACTACTGTTGAAGGTACCATACGCAATCGCCCTTGCGCT
GCTGGATCGCGGTGATATCGACCAATTCATTCCCGCCCTATTGTCTACGTCAGTACCTTA
AAAGTTTTCCCTACCGGGCTTATCAGTTGTGTGGTTCGTAAAAAGGAAAAAAAAGAAGCT
TACTACAATGCTACCATTAACGCATAAAGATTCACGTGGATGCGGCTACCGGATACGGGA
AAAGTTCAACAGTTGGAGCCGGCTCATTCTGTCGGATCGCAATTCGCGTAATTTATTTCT
ATTTCTGCTGCTTAATTTAAGCTTTGCCTTCGTCGAACTAATGTATGGCATATGGACGAA
CAGTTTAGGTTTGATCTCCGATTCGTTCCACATGTTCTTCGACTGTACCGGGCTGTTGGC
TGGTTTGGCTGCGTCCGTTATTACCAAATGGCGTGCAAACGAAAAGTATTCCTACGGGTA
CGTTCGTGCTGAAGTGCTCGCCGGGTTTGTCAACAGTCTCTTTTTGCTGTTTATCGCCTT
CTTCATTATGTCCGAGGCAGTAGAGCGCGCTATAGAGCCACCGGAAGTGAAACACGAACG
ATTGTTCGTCGTATCGGTGCTCGGACTGTTGGTAAACTTGGTCGGTATCTATGCATTCCA
GCACGGTGGAGCACACGGACATTCGCATGGCGGCGGTGGTGGCCACGGGCATTCGCACGG
CGGCGGAGGTGGTGGAAGTCATGGACATTCCCATGGGGGGTGGTATGAATCATCACAGTC
ACGATACTCACAGCCTGCTGTCCA

consensusID : consensus_6949#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 666
fasta sequence

                              [CCGGTGTCGTGATATCGGTCTGTAATACCGCTATGATCGGGCTACCGTCCACTACGTACATGCACAACATTTTGAGGAAATAGAAAAAATAAAATGAGGAATCACTGATTTTTCCCATAGACTACTGTTGAAGGTACCATACGCAATCGCCCTTGCGCTGCTGGATCGCGGTGATATCGACCAATTCATTCCCGCCCTATTGTCTACGTCAGTACCTTAAAAGTTTTCCCTACCGGGCTTATCAGTTGTGTGGTTCGTAAAAAAAAAAAAAAAAGAAGCTTACTACAATGCTACCATTAACGCATAAAGATTCACGTGGATGCGGCTACCGGATACGGGAAAAGTTCAACAGTTGGAGCCGGCTCATTCTGTCGGATCGCAATTCGCGTAATTTATTTCTATTTCTGCTGCTTAATTTAAGCTTTGCCTTCGTCGAACTAATGTATGGCATATGGACGAACAGTTTAGGTTTGATCTCCGATTCGTTCCACATGTTCTTCGACTGATACCGGGCTGTTGGCCGGTTTGGGCTGCGTCCGTTATTACCAAATGGCGTGCAAACGAAAAGTATTCCCTACGGGTACGTTTCGTGCTGAAGTGCTCCGCCGGGTTTGTCAACAGTCCTCTTTTTGCTGGTTATCGCCTTCTTCATTATGTCCGAGGCAG]

[+] EMBL BM594227             [CCGGTGTCGTGATATCGGTCTGTAATACCGCTATGATCGGGCTACCGTCCACTACGTACATGCACAACATTTTGAGGAAATAGAAAAAATAAAATGAGGAATCACTGATTTTTCCCATAGACTACTGTTGAAGGTACCATACGCAATCGCCCTTGCGCTGCTGGATCGCGGTGATATCGACCAATTCATTCCCGCCCTATTGTCTACGTCAGTACCTTAAAAGTTTTCCCTACCGGGCTTATCAGTTGTGTGGTTCGTAAAAAAAAAAAAAAAAGAAGCTTACTACAATGCTACCATTAACGCATAAAGATTCACGTGGATGCGGCTACCGGATACGGGAAAAGTTCAACAGTTGGAGCCGGCTCATTCTGTCGGATCGCAATTCGCGTAATTTATTTCTATTTCTGCTGCTTAATTTAAGCTTTGCCTTCGTCGAACTAATGTATGGCATATGGACGAACAGTTTAGGTTTGATCTCCGATTCGTTCCACATGTTCTTCGACTGATACCGGGCTGTTGGCCGGTTTGGGCTGCGTCCGTTATTACCAAATGGCGTGCAAACGAAAAGTATTCCCTACGGGTACGTTTCGTGCTGAAGTGCTCCGCCGGGTTTGTCAACAGTCCTCTTTTTGCTGGTTATCGCCTTCTTCATTATGTCCGAGGCAG]
[+] EMBL BM592480             [CCGGTGTCGTGATATCGGTCTGTAATACCGCTATGATCGGGCTACCGTCCACTACGTACATGCACAACATTTTGAGGAAATAGAAAAAATAAAATGAGGAATCACTGATTTTTCCCATAGACTACTGTTGAAGGTACCATACGCAATCGCCCTTGCGCTGCTGGATCGCGGTGATATCGACCAATTCATTCCCGCCCTATTGTCTACGTCAGTACCTTAAAAGTTTTCCCTACCGGGCTTATCAGTTGTGTGGTTCGTAAAAAAAAAAAAAAAAGAAGCTTACTACAATGCTACCATTAACGCATAAAGATTCACGTGGATGCGGCTACCGGATACGGGAAAAGTTCAACAGTTGGAGCCGGCTCATTCTGTCGGATCGCAATTCGCGTAATTTATTTCTATTTCTGCTGCTTAATTTAAGCTTTGCCTTCGTCGAACTAATGTATGGCATATGGACGAACAGTTTAGGTTTGATC                                                                                                                                                                                              ]




>consensus_6949#1
CCGGTGTCGTGATATCGGTCTGTAATACCGCTATGATCGGGCTACCGTCCACTACGTACA
TGCACAACATTTTGAGGAAATAGAAAAAATAAAATGAGGAATCACTGATTTTTCCCATAG
ACTACTGTTGAAGGTACCATACGCAATCGCCCTTGCGCTGCTGGATCGCGGTGATATCGA
CCAATTCATTCCCGCCCTATTGTCTACGTCAGTACCTTAAAAGTTTTCCCTACCGGGCTT
ATCAGTTGTGTGGTTCGTAAAAAAAAAAAAAAAAGAAGCTTACTACAATGCTACCATTAA
CGCATAAAGATTCACGTGGATGCGGCTACCGGATACGGGAAAAGTTCAACAGTTGGAGCC
GGCTCATTCTGTCGGATCGCAATTCGCGTAATTTATTTCTATTTCTGCTGCTTAATTTAA
GCTTTGCCTTCGTCGAACTAATGTATGGCATATGGACGAACAGTTTAGGTTTGATCTCCG
ATTCGTTCCACATGTTCTTCGACTGATACCGGGCTGTTGGCCGGTTTGGGCTGCGTCCGT
TATTACCAAATGGCGTGCAAACGAAAAGTATTCCCTACGGGTACGTTTCGTGCTGAAGTG
CTCCGCCGGGTTTGTCAACAGTCCTCTTTTTGCTGGTTATCGCCTTCTTCATTATGTCCG
AGGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6949#0      CCGCCCACGCGTCCGAAAAAAACTACACCGCTCAGACAGCAATTACGGATTCTTGGCCAG 60
consensus_6949#1      ------------------------------------------------------------
                                                                                  

consensus_6949#0      CCGTCCAACAGACTCGCAGGAGTGAAATAAATAGCTGAAATGTGTTCCAAACGATGTTGA 120
consensus_6949#1      -------------CCGGTGTCGTGATATCGGT--CTGTAAT---------ACCGCTATGA 36
                                    **  *  **** **   *  *** ***         **     ***

consensus_6949#0      TCGTGGAAGTATATCACCACAGCCGTGCGCACTACG--GATCGAACCGTTTAATCGCCAC 178
consensus_6949#1      TCGGGCTACCGT-CCACTACGTACATGCACAACATTTTGAGGAAATAGAAAAAATAAAAT 95
                      *** *  *   *  *** **   * *** **  *    **   **  *   **     * 

consensus_6949#0      ATAGG--CACTGATTTTTCCCATAGACTACTGTTGAAGGTACCATACGCAATCGCCCTTG 236
consensus_6949#1      GAGGAATCACTGATTTTTCCCATAGACTACTGTTGAAGGTACCATACGCAATCGCCCTTG 155
                         *   *****************************************************

consensus_6949#0      CGCTGCTGGATCGCGGTGATATCGACCAATTCATTCCCGCCCTATTGTCTACGTCAGTAC 296
consensus_6949#1      CGCTGCTGGATCGCGGTGATATCGACCAATTCATTCCCGCCCTATTGTCTACGTCAGTAC 215
                      ************************************************************

consensus_6949#0      CTTAAAAGTTTTCCCTACCGGGCTTATCAGTTGTGTGGTTCGTAAAAAGGAAAAAAAA-G 355
consensus_6949#1      CTTAAAAGTTTTCCCTACCGGGCTTATCAGTTGTGTGGTTCGTAAAAAAAAAAAAAAAAG 275
                      ************************************************  ******** *

consensus_6949#0      AAGCTTACTACAATGCTACCATTAACGCATAAAGATTCACGTGGATGCGGCTACCGGATA 415
consensus_6949#1      AAGCTTACTACAATGCTACCATTAACGCATAAAGATTCACGTGGATGCGGCTACCGGATA 335
                      ************************************************************

consensus_6949#0      CGGGAAAAGTTCAACAGTTGGAGCCGGCTCATTCTGTCGGATCGCAATTCGCGTAATTTA 475
consensus_6949#1      CGGGAAAAGTTCAACAGTTGGAGCCGGCTCATTCTGTCGGATCGCAATTCGCGTAATTTA 395
                      ************************************************************

consensus_6949#0      TTTCTATTTCTGCTGCTTAATTTAAGCTTTGCCTTCGTCGAACTAATGTATGGCATATGG 535
consensus_6949#1      TTTCTATTTCTGCTGCTTAATTTAAGCTTTGCCTTCGTCGAACTAATGTATGGCATATGG 455
                      ************************************************************

consensus_6949#0      ACGAACAGTTTAGGTTTGATCTCCGATTCGTTCCACATGTTCTTCGACTG-TACCGGGCT 594
consensus_6949#1      ACGAACAGTTTAGGTTTGATCTCCGATTCGTTCCACATGTTCTTCGACTGATACCGGGCT 515
                      ************************************************** *********

consensus_6949#0      GTTGGCTGGTTTGG-CTGCGTCCGTTATTACCAAATGGCGTGCAAACGAAAAGTATTCC- 652
consensus_6949#1      GTTGGCCGGTTTGGGCTGCGTCCGTTATTACCAAATGGCGTGCAAACGAAAAGTATTCCC 575
                      ****** ******* ******************************************** 

consensus_6949#0      TACGGGTACGTT-CGTGCTGAAGTGCTC-GCCGGGTTTGTCAACAGTC-TCTTTTTGCTG 709
consensus_6949#1      TACGGGTACGTTTCGTGCTGAAGTGCTCCGCCGGGTTTGTCAACAGTCCTCTTTTTGCTG 635
                      ************ *************** ******************* ***********

consensus_6949#0      TTTATCGCCTTCTTCATTATGTCCGAGGCAGTAGAGCGCGCTATAGAGCCACCGGAAGTG 769
consensus_6949#1      GTTATCGCCTTCTTCATTATGTCCGAGGCAG----------------------------- 666
                       ******************************                             

consensus_6949#0      AAACACGAACGATTGTTCGTCGTATCGGTGCTCGGACTGTTGGTAAACTTGGTCGGTATC 829
consensus_6949#1      ------------------------------------------------------------
                                                                                  

consensus_6949#0      TATGCATTCCAGCACGGTGGAGCACACGGACATTCGCATGGCGGCGGTGGTGGCCACGGG 889
consensus_6949#1      ------------------------------------------------------------
                                                                                  

consensus_6949#0      CATTCGCACGGCGGCGGAGGTGGTGGAAGTCATGGACATTCCCATGGGGGGTGGTATGAA 949
consensus_6949#1      ------------------------------------------------------------
                                                                                  

consensus_6949#0      TCATCACAGTCACGATACTCACAGCCTGCTGTCCA 984
consensus_6949#1      -----------------------------------