|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6963#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1157 fasta sequence
[ATGCCGGGACTGTTGGGCCTCCGGGGCGGCGGAACTGGTGCACTTATTAGTTAAACCAATCGCCTCCGGGCGCTTTTAGTTTAAATCTGGATAAGGATGCCGATCGTACGGTCGCTTTCGACTTACGACAGATCTTTCAAATGTCTGCCCTATCAACTATTGATGGTAGTGTAGAGGACTACCATGGTTGCGACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACATCCAAGGAAAGCAGCAGGCGCGTAAATTACCCAATCCCGGCACGGGGAGGTAGTGACGAGAAATAACAATATGGACCTCTCTAACGATGGTCCATAATTGGAATGAGTTGAGCATAAATCCCTTTGCAAGGATCAAGTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCACTAGCGTATATTAAAGTTGTTGCGGTTAAAACGTTCGAAGTTGATACCCCGTCCAGACTCGCGTCCCTTTTCGCTAAAGTGCGTTCGCGAGACGTGTTGCGACTTCGGATTTAGTCTGCAAATAAAGAACGATCCCAAGATGAGTACTGCAACGATTCGTACCCGTCGCTACATGAGCAACCGGCTGCTGTGCCGCAAGCAGATGGAAAGCGACGTCCTCCACCCTGGCCTCGCCTCGGTCTCGAAGAAGGAGATCCGCGAGAAGCTCGCCGTCATGTACAAAACCACGCCGGACGTCGTGTTCGTGTTCGGTTTCCGCACGAACTTCGGTGGCGGCAAGTCGACCGGTTTCGCCCTCATCTACGACACCCTGGACCACGCCAAGAAGTTCGAGCCCAAGCACCGTCTCGGCCGCCACGGACTGTACGAGAAGAAGAAGATGACGCGCAA-CAGCGCAAGGAGCGCAAGAACCGTATGAAGAAGGTGCGCGG-ACGAAGAAGGCCAAGGTCGGACAGGCCGTCAAGAAGTAAAACGGCGGAACGGTGATGGTGCCGTAGCTGCTGCTGCTGCTGCCACGGTTGTTGTCGCAGTAGAAGTGGTGGCCGCGTGTCCTCAGGCGGTCCGTGTTTTAAGTTTATATGTTTTCTCTTGTGCGGAAAAATGGAAAACATTCCGCTCAAAAGGAATGAGAATATAAGCAACAATACCATGTAAGGTATCCCG]
[+] EMBL CNS09C7S [ATGCCGGGACTGTTGGGCCTCCGGGGCGGCGGAACTGGTGCACTTATTAGTTAAACCAATCGCCTCCGGGCGCTTTTAGTTTAAATCTGGATAAGGATGCCGATCGTACGGTCGCTTTCGACTTACGACAGATCTTTCAAATGTCTGCCCTATCAAC ]
[+] EMBL CNS092R5 [ gTTGAACCCGGATAAGGATGCCGATCGTACGGTCGCTTGCGACTGACGACAGATCTTTCAAATGTCTGCCCTATCAACTATTGATGGTAGTGTAGAGGACTACCATGGTTGCGACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACATCCAAGGAAAGCAGCAGGCGCGTAAATTACCCAATCCCGGCACGGGGAGGTAGTGACGAGAAATAACAATATGGACCTCTCTAACGATGGTCCATAATTGGAATGAGTTGAGCATAAATCCCTTTGCAAGGATCAAGTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCACTAGCGTATATTAAAGTTGTTGCGGTTAAAACGTTCGAAGTTGATACCCCGTCCAGACTCGCGTCCCTTTTCGCTAAAGTGCGTTCGCGAGACGTGTTGCGACTTCGGATTTAGTCTGCAAATAAAGAACGATCCCAAGATGAGTACTGCAACGATTCGTACCCGTCGCTACATGAGCAACCGGCTGCTGTGCCGCAAGCAGATGGAAAGCGACGTCCTCCACCCTGGCCTCGCCTCGGTCTCGAAGAAGGAGATCCGCGAGAAGCTCGCCGTCATGTACAAAACCACGCCGGACGTCGTGTTCGTGTTCGGTTTCCGCACGAACTTCGGTGGCGGCAAGTCGACCGGTTTCGCCCTCATCTACGACACCCTGGACCACGCCAAGAAGTTCGAGCCCAAGCACCGTCTCGGCCGCCACGGACTGTACGAGAAGAAGAAGATGACGCGCAA CAGCGCAAGGAGCGCAAGAACCGTATGAAGAAGGTGCGCGG ACGAAGAAGGCCAAGGTCGGACAGGCCGTCAAGAAGTAAAACGGCGGAACGGTGATGGTGCCGTAGCTGCTGCTGC ]
[-] EMBL CNS092R6 [ ATAACAATATGGACCTCTCTAACGATGGTCCATAATTGGAATGAGTTGAGCATAAATCCCTTTGCAAGGATCAAGTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCACTAGCGTATATTAAAGTTGTTGCGGTTAAAACGTTCGAAGTTGATACCCCGTCCAAACTCGCGTCCCTTTTCGCTAAAGTGCGTTCGCGAGACGTGTTGCGACTTCGGATTTAGTCTGCAAATAAAGAACGATCCCAAGATGAGTACTGCAACGATTCGTACTCGTCGCTACATGAGCAACCGGCTGCTGTGCCGCAAGCAGAT GTCTGCGACGTCCTCCACCCTGGCCTCGCCTCGGTCTCGAAGAAGGAGATCCGCGAGAAGCTCGCCGTCATGTAAAAAACCACGCCGGACGTCGTGTTCGTGTTCGGTTTCCGCACGAACTTCGGTGGCGGCAAGTCGACCGGTTTCGCCCTCATCTACGACACCCTGGACCACGCCAAGAAGTTCGAGCCCAAGCACCGTCTCGGCCGCCACGGACTGTACGAGAAGAAGAAGATGACGCGCAAGCAGCGCAAGGAGCGCAAGAACCGTATGAAGAAGGTGCGCGGCACGAAGAAGGCCAAGGTCGGACAGGCCGTCAAGAAGTAAAACGGCGGAATGGTGATGGTGCCGTAGCTGCTGCTGCTGCTGCCACGGTTGTTGTCGCAGTAGAAGTGGTGGCCGCGTGTCCTCAGGCGGTCCGTGTTTTAAGTTTATATGTTTTCTCTTGTGCGGAAAAATGGAAAACATTCCGCTCAAAAGGAATGAGAATATAAGCAACAATACCATGTAAGGTATCCCG]
consensusID : consensus_6963#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 677 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCAGCATCCGGAAAATTCACTATTTTGGCTCGTCAACTGAGCACCAGCTCGGCCGCCGCTCAGCTGGTCAAGCCACCGGTGCAGGTCTTCGGACTGGAGGGCCGCTATGCCTGTGCGCTCTATTCCGCTGCCTCCAAGACCAAGGCGCTCGATGCGGTCGAGAAGGATCTGAAGGGGCTGCAGAGCCAGATGCGCTCGGATCCGAAGATGCGCGATCTGCTGCGTGACCCGACGACGAAGCGCAACGTAAAGGCCGCCGCACTGAAGGATGTCGCCGCTAAGGTGAAGTTCAACGCTGCCACCGGCAATCTGCTCACCCTGCTGGCGGAGAACGGTCGCCTCGGCCGTCTGGACGGTATCATCAACGCGTACAGCCTGATCATGGCTGCCGAGCGGGGCGAGGTCGTGTGTGAGGTGAAGACTGCCAAACCGCTGGATGATGGCCAGCGCAAGCAGCTGGAAAATGCTCTCAAGGCATTCCTTAAGCCGAACCAAACGATCCAGCTGACGGCTAAGGTTGACCCGGCACTTATTGGCGGCATGGTTGTTTCGATCGGTGATAAGTACGTCGACATGAGCGTTGCCAGCAAAATCAAGAAGTACACCGACGTCATTACGGCGCCCGTCTAAAATGTAAGCAAAATCATCTAC]
[+] EMBL BM627153 [CCGCCCACGCGTCCGCCCACGCGTCCGCAGCATCCGGAAAATTCACTATTTTGGCTCGTCAACTGAGCACCAGCTCGGCCGCCGCTCAGCTGGTCAAGCCACCGGTGCAGGTCTTCGGACTGGAGGGCCGCTATGCCTGTGCGCTCTATTCCGCTGCCTCCAAGACCAAGGCGCTCGATGCGGTCGAGAAGGATCTGAAGGGGCTGCAGAGCCAGATGCGCTCGGATCCGAAGATGCGCGATCTGCTGCGTGACCCGACGACGAAGCGCAACGTAAAGGCCGCCGCACTGAAGGATGTCGCCGCTAAGGTGAAGTTCAACGCTGCCACCGGCAATCTGCTCACCCTGCTGGCGGAGAACGGTCGCCTCGGCCGTCTGGACGGTATCATCAACGCGTACAGCCTGATCATGGCTGCCGAGCGGGGCGAGGTCGTGTGTGAGGTGAAGACTGCCAAACCGCTGGATGATGGCCAGCGCAAGCAGCTGGAAAATGCTCTCAAGGCATTCCTTAAGCCGAACCAAACGATCCAGCTGACGGCTAAGGTTGACCCGGCACTTATTGGCGGCATGGTTGTTTCGATCGGTGATAAGTACGTCGACATGAGCGTTGCCAGCAAAATCAAGAAGTACACCGACGTCATTACGGCGCCCGTCTAAAATGTAAGCAAAATCATCTAC]
[+] EMBL BM575064 [ CCGCCCACGCGTCCG GCATCCGGAAAATTCACTATTTTGGCTCGTCAACTGAGCACCAGCTCGGCCGCCGCTCAGCTGGTCAAGCCACCGGTGCAGGTCTTCGGACTGGAGGGCCGCTATGCCTGTGCGCTCTATTCCGCTGCCTCCAAGACCAAGGCGCTCGATGCGGTCGAGAAGGATCTGAAGGGGCTGCAGAGCCAGATGCGCTCGGATCCGAAGATGCGCGATCTGCTGCGTGACCCGACGACGAAGCGCAACGTAAAGGCCGCCGCACTGAAGGATGTCGCCGCTAAGGTGAAGTTCAACGCTGCCACCGGCAATCTGCTCACCCTGCTGGCGGAGAACGGTCGCCTCGGCCGTCTGGACGGTATCATCAACGCGTACAGCCTGATCATGGCTGCCGAGCGGGGCGAGGTCGTGTGTGAGGTGAAGACTGCCAAACCGCTGGATGATGGCCAGCGCAAGCAGCTGGAAAATGCTCTCAAGGCATTCCTTAAGCCGAACCAAACGATCCAGCTGACGG ]
consensusID : consensus_6963#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence
[CCGCGAAAAGGCACACTTTTTCACATCGTTTCCCCGTCGCGTGCAAAAGCATCCACACCAATGGCGTCGCTGTGCGGAAGAATTGTGCTGGCTGCGGCCAAGCGAAACGTGACCTACACGCCCGTTCGATTTTGCAAAATGATGAACGACCCGATCGAGCATGCCACCGGTATCGAGAAGCGTGAGCTGCTGGCGAAGCAGGCAGGCAACCCAGATCCGTTCGATATGCGTGTGTTCAAGCGCGGACCGGGCACCAAGGATAGCCCGAACCTGATTCCATCGGCATTCGATGCTCGTCTAGTCGGCTGTGTTTGCGAGGAAGACCAGACCTATGTCCAGTGGATGTGGCTGCACCAGGGCCAGCCGAAGCGTTGCGAATGCGGACACTGGTTCAAACTGGTCGAGAAGGCTCCAGTCTAAACGGTGGCATACCATCCCACACCTCTTGCTCTGTATCTTA]
[+] EMBL BM645940 [CCGCGAAAAGGCACACTTTTTCACATCGTTTCCCCGTCGCGTGCAAAAGCATCCACACCAATGGCGTCGCTGTGCGGAAGAATTGTGCTGGCTGCGGCCAAGCGAAACGTGACCTACACGCCCGTTCGATTTTGCAAAATGATGAACGACCCGATCGAGCATGCCACCGGTATCGAGAAGCGTGAGCTGCTGGCGAAGCAGGCAGGCAACCCAGATCCGTTCGATATGCGTGTGTTCAAGCGCGGACCGGGCACCAAGGATAGCCCGAACCTGATTCCATCGGCATTCGATGCTCGTCTAGTCGGCTGTGTTTGCGAGGAAGACCAGACCTATGTCCAGTGGATGTGGCTGCACCAGGGCCAGCCGAAGCGTTGCGAATGCGGACACTGGTTCAAACTGGTCGAGAAGGCTCCAGTCTAAACGGTGGCATACCATCCCACACCTCTTGCTCTGTATCTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6963#0 ATGCCGGGACTGTTGGGCCTCCGGGGCGGCGGAACTGGTGCACTTATTAGTTAAACCAAT 60
consensus_6963#2 ------------------------------------------------------------
consensus_6963#1 ------------------------------------------------------------
consensus_6963#0 CGCCTCCGGGCGCTTTTAGTTTAAATCTGGATAAGGATGCCGATCGTACGGTCGCTTTCG 120
consensus_6963#2 ------------------------------------------------------------
consensus_6963#1 ------------------------------------------------------------
consensus_6963#0 ACTTACGACAGATCTTTCAAATGTCTGCCCTATCAACTATTGATGGTAGTGTAGAGGACT 180
consensus_6963#2 ------------------------------------------------------------
consensus_6963#1 ------------------------------------------------------------
consensus_6963#0 ACCATGGTTGCGACGGGTAACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAA 240
consensus_6963#2 ------------------------------------------------------------
consensus_6963#1 ------------------------------------------------------------
consensus_6963#0 ATGGCTACCACATCCAAGGAAAGCAGCAGGCGCGTAAATTACCCAATCCCGGCACGGGGA 300
consensus_6963#2 ------------------------------------------------------------
consensus_6963#1 ------------------------------------------------------------
consensus_6963#0 GGTAGTGACGAGAAATAACAATATGGACCTCTCTAACGATGGTCCATAATTGGAATGAGT 360
consensus_6963#2 ------------------------------------------------------------
consensus_6963#1 ------------------------------------------------------------
consensus_6963#0 TGAGCATAAATCCCTTTGCAAGGATCAAGTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGG 420
consensus_6963#2 ------------------------------------------------------------
consensus_6963#1 ------------------------------------------------------------
consensus_6963#0 TAATTCCAGCTCCACTAGCGTATATTAAAGTTGTTGCGGTTAAAACGTTCGAAGTTGATA 480
consensus_6963#2 ------------------------------------------------------------
consensus_6963#1 --------------------------------------------------CCGCCCACGC 10
consensus_6963#0 CCCCGTCCAGACTCGCGTCCCTTTTCGCTAAAGTGCGTTCGCGAGACGTGTTGCGACTTC 540
consensus_6963#2 ------------------------------------------------------------
consensus_6963#1 GTCCGCCCACGCGTCCGCAGCATCCGGAAAATTCACTATTTTGGCTCGTCAACTGAGCAC 70
consensus_6963#0 GGATTTAGTCTGCAAATAAAGAACGATCCCAAGATGAGTACTGCAACGATTCGTACCCGT 600
consensus_6963#2 ------------------------------------------------------------
consensus_6963#1 CAGCTCGGCCGCCGCTCAGCTGGTCAAGCCACCGGTGCAGGTCTTCGGACTGGAGGGCCG 130
consensus_6963#0 CGCTACATGAGCAACCGGCTGCTGTGCCGCAAGCAGATGGAAAGCGACGTCCTCCACCCT 660
consensus_6963#2 ------------------------------------------------------------
consensus_6963#1 CTATGCCTGTGCGCTCTATTCCGCTGCCTCCAAGACCAAGGCGCTCGATGCGGTCGAGAA 190
consensus_6963#0 GGCCTCGCCTCGGTCTCGAAG--AAGGAGATCCGCGAGAAGC---TCGCCGTCATGTACA 715
consensus_6963#2 -------------CCGCGAAA--AGGCACACTTTTTCACATCGTTTCCCCGTCGCGTGCA 45
consensus_6963#1 GGATCTGAAGGGGCTGCAGAGCCAGATGCGCTCGGATCCGAAGATGCGCGATCTGCTGCG 250
* * * * * ** * *
consensus_6963#0 AAACC--ACGCCGGACGTCGTGTTCGTGTTCGGTTTCCGCACGAACTTCGGTGGCGGCAA 773
consensus_6963#2 AAAGC--ATCC---ACACCAATGGCGT---CGCTGTGCGGAAGAATTGTGCTGGCTGCG- 96
consensus_6963#1 TGACCCGACGACGAAGCGCAACGTAAAGGCCGCCGCACTGAAGGATGTCGCCGCTAAGGT 310
* * * * * ** * * * * * *
consensus_6963#0 GTCGACCGGTTTCGCCCTCATCTACG-ACACCCTGGACCACGCCAAGAAGTTCGAGCCCA 832
consensus_6963#2 GCCAAGCGA----AACGTGACCTACACGCCCGTTCGATTTTGCAAAATGAT--GAAC--- 147
consensus_6963#1 GAAGTTCAA---CGCTGCCACCGGCA-ATCTGCTC-ACCCTGCTGGCGGA---GAACGGT 362
* * * * * * * ** ** *
consensus_6963#0 AGCACCGTCTCGGCCGCCACGGACTGTACGAGAAGAAGAAGATGACG-CGCAACAGCGCA 891
consensus_6963#2 GACCCGATCGAGCATGCCACCGG-TAT-CGAGAAGCGTGAGCTGCTGGCGAAGCAG-GCA 204
consensus_6963#1 CGCCTCGGC-CGTCTGG-ACGGTATCATCAACGCGTACAGCCTGAT--CATGGCTG-CCG 417
* * * * ** * * * * * ** * * * *
consensus_6963#0 AGGAGCGCAAGAAC-CGTATGAAGAAGGTGCG--CGGAC----GAAGAAGGCCAAGGTCG 944
consensus_6963#2 GGCAAC-CCAGATC-CGTTCGATATGCGTGTGTTCAAGC----GCGGACCGGGCACCAAG 258
consensus_6963#1 AGCGGGGCGAGGTCGTGTGTGAGGTGAAGACTGCCAAACCGCTGGATGATGGCCAGCGCA 477
* * ** * ** ** * * * * *
consensus_6963#0 GACAGGCCGTCAAGAAGTAAAACGGCGGAACGGTGATGGTGCCGT-AGCTGCTGCTGCTG 1003
consensus_6963#2 GATAGCCCGAACCTGATTCCATCGGCATT-CGATGCTCGTCTAGTCGGCTGTGTTTGCGA 317
consensus_6963#1 AGCAGCTGGAAAATGCTCTCAAGGCATTCCTTAAGCCGAACCAAACGATCCAGCTGACGG 537
** * * * * *
consensus_6963#0 CTGCCAC--GGTTGTTG-TCGCAGTAGAAGTGGTGGCCGCGTGTCCTCAGGCGGTCCGTG 1060
consensus_6963#2 GGAAGACCAGACCTATG-TC-CAGTGGATGTGGCTGCACCAGGGCC--AGCCGAAGCGT- 372
consensus_6963#1 CTAAGGTTGACCCGGCACTTATTGGCGGCATGGTTGTTTCG-ATCGGTGATAAGTACGTC 596
* * * *** * * * ***
consensus_6963#0 TTTTAAGTTTATATGTTTTCTCTTGTGCGGAAAAATGGAA-AACATTCCGCTCAAAAGGA 1119
consensus_6963#2 -------TGCGAATGCGGACACTGGTTCAAACTGGTCGAG-AAGGCTCCAGTCTAAACGG 424
consensus_6963#1 -----GACATGAGCGTTGCCAGCAAAATCAAGAAGTACACCGACGTCATTACGGCGCCCG 651
* * * * * *
consensus_6963#0 ATGAGAATATAAGCAACAATACCATGTAAGGTATCCCG 1157
consensus_6963#2 T--GGCATACCATCCCACACCTCTTGCTCTGTATCTTA 460
consensus_6963#1 TCTAAAATGTAAGCAAAATCATCTAC------------ 677
** * * *
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||