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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6969#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1324 fasta sequence
[CCGAGAACAACGACATTTGCCGCGTTTCGGTCGAGCGTGTGAAAAAAAGCGAATTTGGCCAACATTTTCCGCCCGCCAGCTTCCGATTAACCTTTACCGCACAAGAAAACACTCTGACCATCGGTTTGCCGCCCGGAAGTAGCCCATCAGCAGACATCTTGTAGCGAAAATCGGCCCCTCCGATTTCGGTCTGCGCTTGAGGGG-TTTTTTCGGCGAGGGAAGCGGTAGCGTCGTCGGCCCGCGGTGATACCAGATTATTGGTCGCTTGGCTCTGCAAAGTATGTAAACAGTGCTGTTTGCTGACTATTCTCTTGCCATCCAATTCTCCATACCCGCACCACAACGTACAATACACGCGCGCCCCGGTCCGTACGGACACCATCGCACCGTGCCGTCAACGAGCAGTCAAAGATGTCTCGCTACCCGCACGACGCCAAGGTTTACGTCGGTGAGTTAGGTAACAATGCCAGCAAGCAGGACATCGAGGAAGCGTTCGGGTACTACGGGCCGCTGCGCAACGTGTGGGTCGCCCGCAACCCGCCCGGCTTTGCGTTCGTCGAGTTCGAGGATGCGCGCGACGCGGAGGATGCGGTGCGCGGGCTGGACGGCCGCACCATTTCCGGCCGCCGGGCCCGGGTAGAGCTATCGACGGGACGGGGCGGACGCGGTGGCGGTGGTGGTCGTGGTGGGCCACCGCGCGGCGGCGGCAAGGGTGGCC-GGTTCCAGTCCGACGACCGCTGCTACGAGTGTGGCGGCCGGGGCCACTTTGCACGCGATTGCGCACGTTCCGGGCGCAGGGGACGCAAAAGATCGCGCAGCCCCCGGTCGCGATCGCGCGAGCTGCGTACGCGTTCGCGTANCTACAGCCGTTCCCGCAGCCGCTCCCGGGATCGTCGTTCGCGGTCGAANGCAACGCCGAAGCGGGGCGCTGCCGCCAACAATCGCTCGCTGAGCCGCGACGTGAGCAAAACNCCCCGGCGCAACGTGTCGCGCA-NCCGTCCCGCAGCAAGTCCCGCTCGATCAGGCGTTCGCTGTCGCGCTCACAGTCCCGGTCGGTGTCACGATCGCGCTCCCGCCACCGCAACGGAGATCACTAGATGATGATGATGACGACGACGACGCGGAAGACGTGTGCTGTAGGACGCTAAGGACTTTAACAACAGAGAAAACCAACAAACAAACAAACAAAATAACATCAACAGGGTGTAGGAGAGGTGATCCTTTTTTGCCTCTGGACGGCTGCTAGCACGAGCGGGGAAAAAGAGATAAGGAAAGATAAACAGGGAAATAGTAGTGGGGAGGCAGAGAATCCGTATCCTTCATA]
[+] EMBL BM617106 [CCGAGAACAACGACATTTGCCGCGTTTCGGTCGAGCGTGTGAAAAAAAGCGAATTTGGCCAACATTTTCCGCCCGCCAGCTTCCGATTAACCTTTACCGCACAAGAAAACACTCTGACCATCGGTTTGCCGCCCGGAAGTAGCCCATCAGCAGACATCTTGTAGCGAAAATCGGCCCCTCCGATTTCGGTCTGCGCTTGAGGGGTTTTTTTCGGCGAGGGAAGCGGTAGCGTCGTCGGCCCGCGGTGATACCAGATTATTGGTCGCTTGGCTCAGCAAAGTATGTAAACAGTGCTGTTTGCTGACTATTCTCTTGCCATCCAATTCTCCATACCCGCACCACAACGTACAATACACGCGCGCCCCGGTCCGTACGGACACCATCGCACCGTGCCGTCAACGAGCAGTCAAAGATGTCTCGCTACCCGCACGACGCCAAGGTTTACGTCGGTGAGTTAGGTAACAATGCCAGCAAGCAGGACATCGAGGAAGCGTTCGGGTACTACGGGCCGCTGCGCAACGTGTGGGTCGCCCGCAACCCGCCCGGCTTTGCGTTCGTCGAGTTCGAGGATGC ]
[+] EMBL BX621938 [ CCGCGTTTCGGTCGAGCGTGTAAAAAAAAGCGAATTTGGCCAACATTTTCCGCCCGCCAGCTTCCGACTAACCTTTACCGCACAAGAAAACACTCTGACCATCGGTTTGCCGCCCGGAAGTTGCCCATCAGCAGACATCTTGTAGCGAAAATCGGCCCCTCCGATTTCGGTCTGCGCTTGAGGGG GTTTTTCGGCGAGGGAAGCGGTAGCGTCGTCGGCCCGCGGTGATACCAGATTATTGGTCGCTTGGCTCTGCAAAGTATGTAAACAGTGCTGTTTGCTGACTATTCTCTTGCCATCCAATTCTCCATACCCGCACCACAACGTACAATACACGCGCGCCCCGGTCCGTACGGACACCATCGCACCGTGCCGTCAACGAGCAGTCAAAGATGTCTCGCTACCCGCACGACGCCAAGGTTTACGTCGGTGAGTTAGGTAACAATGCCAGCAAGCAGGACATCGAGGAAGCGTTCGGGTACTACGGGCCGCTGCGCAACGTGTGGGTCGCCCGCAACCCGCCCGGCTTTGCGTTCGTCGAGTTCGAGGATGCGCGCGACGCGGAGGATGCGGTGCGCGGGCTGGACGGCCGCACCATTTCCGGCCGCCGGGCCCGGGTAGAGCTATCGACGGGACGGGGCGGACGCGGTGGCGGTGGTGGTCGTGGTGGGCCACCGCGCGGCGGCGGCAAGGGTGGCCGGGTTCCAGTCCGACGACCGCTGCTACNAATGTGGCGGCCGGGGCCACTTTGCt ]
[+] EMBL BX622752 [ TTGGCTCTGCAAAGTATGTAAACAGTGCTGTTTGCTGACTATTCTCTTGCCATCCAATTCTCCATACCCGCACCACAACGTACAATACACGCGCGCCCCGGTCCGTACGGACACCATCGCACCGTGCCGTCAACGAGCAGTCAAAGATGTCTCGCTACCCGCACGACGCCAAGGTTTACGTCGGTGAGTTAGGTAACAATGCCAGCAAGCAGGACATCGAGGAAGCGTTCGGGTACTACGGGCCGCTGCGCAACGTGTGGGTCGCCCGCAACCCGCCCGGCTTTGCGTTCGTCGAGTTCGAGGATGCGCGCGACGCGGAGGATGCGGTGCGCGGGCTGGACGGCCGCACCATTTCCGGCCGCCGGGCCCGGGTAGAGCTTTCGACGGGACGGGGCGGCCGCGGTGGCGGTGGTGGTCGTGGTGGGCCACCGCGCGGCGGCGGCAAGGGTGGCC GGTTCCAGTCCGACGACCGCTGCTACGAGTGTGGCGGCCGGGGCCACTTTGCACGCGATTGCGCACGTTCCGGGCGCAGGGGACGCAAAAGATCGCGCAGCCCCCGGTCGCGATCGCGCGAGCTGCGTACGCGTTCGCGTANCTACAGCCGTTCCCGCAGCCGCTCCCGGGATCGTCGTTCGCGGTCGAANGCAACGCCGAAGCGGGGCGCTGCCGCCAACAATCGCTCGCTGAGCCGCGACGTGAGCAAAACNCCCCGGCGCAACGTGTCGCGCA NCCGTCCCGCAGCAAGT ]
[+] EMBL BM583953 [ ccGCGGACGC GTGGGGGTGGTGGTCGTGGTGGGCCACCGCGCGGCGGCGGCAAGGGTGGCC GGTTCCAGTCCGACGACCGCTGCTACGAGTGTGGCGGCCGGGGCCACTTTGCACGCGATTGCGCACGTTCCGGGCGCAGGGGACGCAAAAGATCGCGCAGCCCCCGGTCGCGATCGCGCGAGCTGCGTACGCGTTCGCGCAGCTACAGCCGTTCCCGCAGCCGCTCCCGGGATCGTCGTTCGCGGTCGAAGGCAACGCCGAAGCGGGGCGCTGCCGCCAACAATCGCTCGCTGAGCCGCGACGTGAGCAAAACGCCCCGGCGCAACGTGTCGCGCAGCCCGTCGCGCAGCAAGTCCCGCTCGATCAGGCGTTCGCTGTCGCGCTCACAGTCCCGGTCGGTGTCACGATCGCGCTCCCGCCACCGCAACGGAGATCACTAGATGATGATGATGACGACGACGACGCGGAAGACGTGTGCTGTAGGACGCTAAGGACTTTAACAACAGAGAAAACCAACAAACAAACAAACAAAATAACATCAACAGGGTGTAGGAGAGGTGATCCTTTTTTGCCTCTGGACGGCTGCTAGCACGAGCGGGGAAAAAGAGATAAGGAAAGATAAACAGGGAAATAGTAGTGGGGAGGCAGAGAATCCGTATCCTTCATA]
consensusID : consensus_6969#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 752 fasta sequence
[NCTGCCCGCNNNCTACGANNGTNTGCCGCCCTGGGGCCACCTTTGCCACCCTCGATTGCGCACGTTTCCGGGNCCCAGGGGACGCNATCTAAGATCGCGCAGCCCCCGTGTCGCGATCGCGCGNAGCTGCGTACGCGTTCGCGTAGCTACAGCCGTTCCCGCAGTCCGCTCCTCGGGATCCGTCGCTCGCGGTCGAAGGCAACGCCGAAGCGGGGCGCTGCCGTCCTAACAATCGCTCGCCTGAGCCGCCGACGTGAGCNNAAACGNCCCCGGCGCAACGTATCGCGCAGCCCGTCGCGCAGCAAGTCTCGCTCGATCAGGCGTTCGCTGTCGCGCTCACAGTCCCGGTCGGTGTCACGATCGCGCTCCCGCCACCGCAACGGAGATCACTAGATGATGATGACGAGGACGAGGACGACATGTGCTGTAGGACGCTAAGGACTTTAACAACAGAGAAAACCAACAAACAAACATAACAAAATAACATCAACAGGTGTAGGGGGGTGATCCTTTTTTGCCTCTGGACGCTGCTAGCACGAGCGGGGAAAAAGAGATAAGGAAAGATAAACAGGGAAATAGTAGTGGGGAGGCAGAGCATCCGTATCCTTCATAACAACAAACGTCTAATCGTCTACCCGTGTGCAGCAGCAGCAGCGGTTGGGGTGGCGGTTGAGATGCGGACCAAATGTTTACATGATACTCACAAGGACGAAAGGACAGTAAAAAAAATCAAANACNAAGGCAGGCATGTG]
[-] EMBL BX466712 [NCTGCCCGCNNNCTACGANNGTNTGCCGCCCTGGGGCCACCTTTGCCACCCTCGATTGCGCACGTTTCCGGGNCCCAGGGGACGCNATCTAAGATCGCGCAGCCCCCGTGTCGCGATCGCGCGNAGCTGCGTACGCGTTCGCGTAGCTACAGCCGTTCCCGCAGTCCGCTCCTCGGGATCCGTCGCTCGCGGTCGAAGGCAACGCCGAAGCGGGGCGCTGCCGTCCTAACAATCGCTCGCCTGAGCCGCCGACGTGAGCNNAAACGNCCCCGGCGCAACGTATCGCGCAGCCCGTCGCGCAGCAAGTCTCGCTCGATCAGGCGTTCGCTGTCGCGCTCACAGTCCCGGTCGGTGTCACGATCGCGCTCCCGCCACCGCAACGGAGATCACTAGATGATGATGACGAGGACGAGGACGACATGTGCTGTAGGACGCTAAGGACTTTAACAACAGAGAAAACCAACAAACAAACATAACAAAATAACATCAACAGGTGTAGGGGGGTGATCCTTTTTTGCCTCTGGACGCTGCTAGCACGAGCGGGGAAAAAGAGATAAGGAAAGATAAACAGGGAAATAGTAGTGGGGAGGCAGAGCATCCGTATCCTTCATAACAACAAACGTCTAATCGTCTACCCGTGTGCAGCAGCAGCAGCGGTTGGGGTGGCGGTTGAGATGCGGACCAAATGTTTACATGATACTCACAAGGACGAAAGGACAGTAAAAAAAATCAAANACNAAGGCAGGCATGTG]
consensusID : consensus_6969#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence
[CGAGGTTAAGCGTGTGAAAAAAAGCGAATTTGGCAACATTTTCCGCCCGCCAGCTTCCGATTAACCTTTACCTGCACAAGAAAACACTCTGACCATCGGTTTGCCGCCCGGAAGTAGCCCATCAGCAGACATCTTGTAGCGAAAATCTGGCCCCTCCGATTTCGGTCTGCGCTTGAGTGGGGTTNAANCTGGCGACGGGAAGCGGTAGCGTCGTCGGGGCCGCGGTGATACCAGATNTATTGGGTACGCTTGTGCTCTTGGAAGAGTATTGTACAAAGATGTACTCGGCTGACCCGGACGACGACCATAGGTTNACTGTCGGATGCACGCTTCAGCGTAACAAATGGCCAGACAAGCAGGACATCGGANGNGCAAAGCGGTTCGCGAGATTANCTTGACANGATGCACAGGCTAGACGCCTATAACCGGGTAGGTAGCGNGATTCTGGCCGGCCTANAAGCCCCAGACCCCAGGTGCTATTACGGCCGCTTTGCCGA]
[+] EMBL AL697394 [CGAGGTTAAGCGTGTGAAAAAAAGCGAATTTGGCAACATTTTCCGCCCGCCAGCTTCCGATTAACCTTTACCTGCACAAGAAAACACTCTGACCATCGGTTTGCCGCCCGGAAGTAGCCCATCAGCAGACATCTTGTAGCGAAAATCTGGCCCCTCCGATTTCGGTCTGCGCTTGAGTGGGGTTNAANCTGGCGACGGGAAGCGGTAGCGTCGTCGGGGCCGCGGTGATACCAGATNTATTGGGTACGCTTGTGCTCTTGGAAGAGTATTGTACAAAGATGTACTCGGCTGACCCGGACGACGACCATAGGTTNACTGTCGGATGCACGCTTCAGCGTAACAAATGGCCAGACAAGCAGGACATCGGANGNGCAAAGCGGTTCGCGAGATTANCTTGACANGATGCACAGGCTAGACGCCTATAACCGGGTAGGTAGCGNGATTCTGGCCGGCCTANAAGCCCCAGACCCCAGGTGCTATTACGGCCGCTTTGCCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6969#0 CCGAGAACAACGACATTTGCCGCGTTTCGGTCGAGCGTGTGAAAAAAAGCGAATTTGGCC 60
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 AACATTTTCCGCCCGCCAGCTTCCGATTAACCTTTACCGCACAAGAAAACACTCTGACCA 120
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 TCGGTTTGCCGCCCGGAAGTAGCCCATCAGCAGACATCTTGTAGCGAAAATCGGCCCCTC 180
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 CGATTTCGGTCTGCGCTTGAGGGGTTTTTTCGGCGAGGGAAGCGGTAGCGTCGTCGGCCC 240
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 GCGGTGATACCAGATTATTGGTCGCTTGGCTCTGCAAAGTATGTAAACAGTGCTGTTTGC 300
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 TGACTATTCTCTTGCCATCCAATTCTCCATACCCGCACCACAACGTACAATACACGCGCG 360
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 CCCCGGTCCGTACGGACACCATCGCACCGTGCCGTCAACGAGCAGTCAAAGATGTCTCGC 420
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 TACCCGCACGACGCCAAGGTTTACGTCGGTGAGTTAGGTAACAATGCCAGCAAGCAGGAC 480
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 ATCGAGGAAGCGTTCGGGTACTACGGGCCGCTGCGCAACGTGTGGGTCGCCCGCAACCCG 540
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 CCCGGCTTTGCGTTCGTCGAGTTCGAGGATGCGCGCGACGCGGAGGATGCGGTGCGCGGG 600
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 CTGGACGGCCGCACCATTTCCGGCCGCCGGGCCCGGGTAGAGCTATCGACGGGACGGGGC 660
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 GGACGCGGTGGCGGTGGTGGTCGTGGTGGGCCACCGCGCGGCGGCGGCAAGGGTGGCCGG 720
consensus_6969#1 ------------------------------------------------------------
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 TTCCAGTCCGACGACCGCTGCTACGAGTGTGGCGGCC-GGGGCCACTTT----GCACGCG 775
consensus_6969#1 ------NCTGCCCGCNNNCTACGANNGTNTGCCGCCCTGGGGCCACCTTTGCCACCCTCG 54
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 ATTGCGCACGTTCC--GGGCGCAGGGGACGCAA---AAGATCGCGCAGCCCCCG-GTCGC 829
consensus_6969#1 ATTGCGCACGTTTCCGGGNCCCAGGGGACGCNATCTAAGATCGCGCAGCCCCCGTGTCGC 114
consensus_6969#2 ---------------------------------------------------------CGA 3
**
consensus_6969#0 GATCGCGCGA-GCTGCGTACGCGTTCGCGTANCTACAGCCGTTCCCGCAG-CCGCTCC-C 886
consensus_6969#1 GATCGCGCGNAGCTGCGTACGCGTTCGCGTAGCTACAGCCGTTCCCGCAGTCCGCTCCTC 174
consensus_6969#2 GGTTAAGCGT--GTGAAAAAAAGCGAATTTGGCAACATT--TTCCGCCCGCCAGCTTCCG 59
* * *** ** * * * * *** **** * * * *** *
consensus_6969#0 GGGATC-GTCGTTCGCGGTCGAANGCAACGCCGAAGCGGGGCGCTGCCGCC--AACAATC 943
consensus_6969#1 GGGATCCGTCGCTCGCGGTCGAAGGCAACGCCGAAGCGGGGCGCTGCCGTCCTAACAATC 234
consensus_6969#2 ATTAACCTTTACCTGCACAAGAAAACACT--CTGACCATCGGTTTGCCGCCC-GGAAGTA 116
* * * ** *** ** * * * * ***** * * *
consensus_6969#0 GCTCGC-TGAGCCGC-GACGTG-AGCAAAACN--CCCCGGCGCAACGTGTCGCGCANCC- 997
consensus_6969#1 GCTCGCCTGAGCCGCCGACGTG-AGCNNAAACGNCCCCGGCGCAACGTATCGCGCAGCCC 293
consensus_6969#2 GCCCA--TCAGCAGACATCTTGTAGCGAAAATCTGGCCCCTCCGATTTCGGTCTGCGCTT 174
** * * *** * * ** *** ** ** * * * * *
consensus_6969#0 GTCCCGCAGCAAGTCCCGCTCGATCAGGCGTT--CGCTGTCGCGCTCACAGT----CCCG 1051
consensus_6969#1 GTCGCGCAGCAAGTCTCGCTCGATCAGGCGTT--CGCTGTCGCGCTCACAGT----CCCG 347
consensus_6969#2 GAGTGGGGTTNAANCTGGCGACGGGAAGCGGTAGCGTCGTCGGGGCCGCGGTGATACCAG 234
* * * * ** * *** * ** **** * * * ** ** *
consensus_6969#0 GTCGGT--GTCACGATCGCGCTCCCGCCACCGCAACGGAGATCACTAGATGATGATGATG 1109
consensus_6969#1 GTCGGT--GTCACGATCGCGCTCCCGCCACCGCAACGGAGATCACTAGATGATGATGACG 405
consensus_6969#2 ATNTATTGGGTACGCTTGTGCTCTTGGAAGAGTATTGTACAAAGATGTACTCGGCTGACC 294
* * * *** * * **** * * * * * * * * * * ***
consensus_6969#0 ACGACGACGACGCGGAAGACGTGTGCTGTAGGACGCTAAGGACTTTAACAACAGAGAAAA 1169
consensus_6969#1 AGGACGAGGAC------GACATGTGCTGTAGGACGCTAAGGACTTTAACAACAGAGAAAA 459
consensus_6969#2 CGGACGACGACC----ATAGGTTNACTGTCGGATGC---ACGCTT---CAGCGTAACAAA 344
***** *** * * **** *** ** *** ** * * ***
consensus_6969#0 CCAACAAACAAACA-AACAAAATAACATCAACAGGGTGTAGGAGAGGTGATCCTTTTTTG 1228
consensus_6969#1 CCAACAAACAAACATAACAAAATAACATCAACAGG-TGTAGG-GGGGTGATCCTTTTTTG 517
consensus_6969#2 TGGCCAGACAAGCAGGACATCGGANGNGCAAAGCG--GTTCGCGAGATTANC-----TTG 397
** **** ** *** * *** * ** * * * * * * ***
consensus_6969#0 CCTCTGGACGGCTGCTAGCACGAGCGGGGAAAAAGAGATAAGGAAAGATAAACAGGGAAA 1288
consensus_6969#1 CCTCTGGACG-CTGCTAGCACGAGCGGGGAAAAAGAGATAAGGAAAGATAAACAGGGAAA 576
consensus_6969#2 ACANGATGCACAGGCTAG-ACGCCTATAACCGGGTAGGTAGCGNGATTCTGGCCGGCCTA 456
* * ***** *** ** ** * * * ** *
consensus_6969#0 TAGTAGTGGGGAGGCAGA-GAATCCGTATCCTTCATA----------------------- 1324
consensus_6969#1 TAGTAGTGGGGAGGCAGA-GCATCCGTATCCTTCATAACAACAAACGTCTAATCGTCTAC 635
consensus_6969#2 NAAGCCCCAGACCCCAGGTGCTATTACGGCCGCTTTGCCGA------------------- 497
* * *** * ** *
consensus_6969#0 ------------------------------------------------------------
consensus_6969#1 CCGTGTGCAGCAGCAGCAGCGGTTGGGGTGGCGGTTGAGATGCGGACCAAATGTTTACAT 695
consensus_6969#2 ------------------------------------------------------------
consensus_6969#0 ---------------------------------------------------------
consensus_6969#1 GATACTCACAAGGACGAAAGGACAGTAAAAAAAATCAAANACNAAGGCAGGCATGTG 752
consensus_6969#2 ---------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||