cluster # 6972

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Anopheles gambiae
cluster # 6972 cluster # 6972 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6972#0 length = 927 sequences # 5

consensus_6972#1 length = 693 sequences # 1

consensusID : consensus_6972#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 927
fasta sequence

                              [TTCCTCGAGAACTGTTGGCCAACTGGACTGTGCAGTCGTAGATTTGTTATGAAAAGTGCAATTGTTTAGCTTTAGTTCCACACAAATGTATGAAATAAATTAAGGATTTTCACCAGTAAAACACGCACAAACGAAACATTGCGATGGACGCCCTGAACACGTACTACAGCAAGGAGGAGTACGTGGAAACAGCTTCCGGCAACAAGGTGAGCCGCCAGACGGTACTGTGCGGCTCGCAAAACATTGTCCTCCACGGGAAAGTGATCGTGCAGAGCGGGGCCATCATCCGCGGTGATTTGGCCGCCGTCCGCACCGGACGGTACTGCGTCATCTCGAAGGGTTCGGTCGTGCGGCCACCGTACAAGCAGTTCAGCAAGGGTGTTGCATTTTTCCCGCTGCAGATCGGCGATCATGTGTTCATTGGCGAGGGAGCCGTCGTTTCAGCGGCATCGATCGGTTCCTACGTTTACATCGGCAAGAATGCTGTGATAGGACGACGATGCATACTGAAGGATAACTGTATCGTGGAGGACGGTGCCGTTGTGCCGCCGGAAACAACAATTGCAAGTTACATGCGTTACACCGCGGACGGAAGGATCGAGGGTGGACAGGGCAATCCCGATTTTGTGCCCCACGGTATGCTGGATCTGATGATCGAGTTTACCAAATCCTACTACGACCATTTCGTTCCGGCACCCAACTGACGGCAACGTGAACTCTCGGCCGTGCCGAGAGTGCCACGAGTGCAGTGAGAGAAGGAAGGTGCATCACTCCCCCGTTTTCAGCAATTCCACAACTCGTA-TCGTCTGCACTGCGGAAACCGATCATAACCATTACGAGCGCATAGGCATATATTTATTCACAGCA-AGCTAACCAATAAAATCGTGTATCGTCAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCC]

[-] EMBL CNS0953X             [TTCCTCGAGAACTGTTGGCCAACTGGACTGTGCAGTCGTAGATTTGTTATGAAAAGTGCAATTGTTTAGCTTTAGTTCCACACAAATGTATGAAATAAATTAAGGATTTTCACCAGTAAAAAACGCACAAACGAAACATTGCGATGGACGCCCTGAACACGTACTACAGCAAGGAGGAGTACGTGGAAACAGCTTCCGGCAACAAGGTGAGCCGCCAGACGGTACTGTGCGGCTCGCAAAACATTGTCCTCCACGGGAAAGTGATCGTGCAGAGCGGGGCCATCATCCGCGGTGATTTGGCCGCCGTCCGCACCGGACGGTACTGCGTCATCTCGAAGGGTTCGGTCGTGCGGCCACCGTACAAGCAGTTCAGCAAGGGTGTTGCATTTTTCCCGCTGCAGATCGGCGATCATGTGTTTATTGGCGAGGGAGCCGTCGTTTCAGCGGCATCGATCGGTTCCTACGTTTACATCGGCAAAAATGCTGTGATAGGACGACGATGCATACTGAAGGATAACTGTATCGTGGAGGACGGTGCCGTTGTGCCGCCGGAAACAACAATTGCAAGTTACATGCGTTACACCGCGGACGGAAGGATCGAGGGTGGACAGGGCAATCCCGATTTTGTGCCCCACGGTATGCTGGATCTGATGATCGAGTTTACCAAATCCTACTACGACCATTTCGTTCCGGCACCCAACTGACGGCAACGTGAACTCTCGGCCGTGCCGAGAGTGCCACGAGTGCAGTGAGAGAAGGAAGGTGCATCACTCCCCCGTTTTCAGCAATTCCACAACTCGTATTTGTCTGCACTGCGGAAACCGATCATAACCATTACGAGCGCATAGGCATATATTTATTCACAGCAGAGCTAACCAATAGAATCG                                          ]
[+] EMBL CNS0953W             [                           CTGTG AGTCGTAGATTTGTTATGAAAAGTGCAATTGTTTAGCTTTAGTTCCACACAAATGTATGAAATAAATTAAGGATTTTAACCAGTAAAACACGCACAAACGAAACATTGCGATGGACGCCCTGAACACGTACTACAGCAAGGAGGAGTACGTGGAAACAGCTTCCGGCAACAAGGTGAGCCGCCAGACGGTACTGTGCGGCTCGCAAAACATTGTCCTCCACGGGAAAGTGATCGTGCAGAGCGGGGCCATCATCCGCGGTGATTTGGCCGCCGTCCGCACCGGACGGTACTGCGTCATCTCGAAGGGTTCGGTCGTGCGGCCACCGTACAAGCAGTTCAGCAAGGGTGTTGCATTTTTCCCGCTGCAGATCGGCGATCATGTGTTCATTGGCGAGGGAGCCGTCGTTTCAGCGGCATCGATCGGTTCCTACGTTTACATCGGCAAGAATGCTGTGATAGGACGACGATGCATACTGAAGGATAACTGTATCGTGGAGGACGGTGCCGTTGTGCCGCCGGAAACAACAATTGCAAGTTACATGCGTTACACCGCGGACGGAAGGATCGAGGGTGGACAGGGCAATCCCGATTTTGTGCCCCACGGTATGCTGGATCTGATGATCGAGTTTACCAAATCCTACTACGACCATTTCGTTCCGGCACCCAACTGACGGCAACGTGAACTCTCGGCCGTG CGAGAGTGCCACGAGTGCAGTGAGAGAAGGAAGGTGCATCACTCCCCCGTTTTCAGCAATTCCACAACTCGTA TCGTCTGCACTGCGGAAACCGATCATAACCATTACGAGCGCATAGGCATATATTTATTCACAGCA AGCTAACCAATAAAATCGTGTATCGTC AAAAAAAAAAAAAGGCCACATGTGCCCGAGCC]
[+] EMBL CNS099H3             [                                          TTTGTTATG AAAGTGCAATTGTTT GCTTTAGTTCCACACAAATGTATGAAATAAATTAAGGATTTTCACCAGTAAAACACGCACAAACGAAACATTGCGATGGACGCCCTGAACACGTACTACAGCAAGGAGGAGTACGTGGAAACAGCTTCCGGCAACAAGGTGAGCCGCCAGACGGTACTGTGCGGCTCGCAAAACATTGTCCTCCACGGGAAAGTGATCGTGCAGAGCGGGGCCATCATCCGCGGTGATTTGGCCGCCGTCCGCACCGGACGGTACTGCGTCATCTCGAAGGGTTCGGTCGTGCGGCCACCGTACAAGCAGTTCAGCAAGGGTGTTGCATTTTTCCCGCTGCAGATCGGCGATCATGTGTTCATTGGCGAGGGAGCCGTCGTTTCAGCGGCATCGATCGGTTCCTACGTTTACATCGGCAAGAATGCTGTGATAGGACGACGATGCATACTGAAGGATAACTGTATCGTGGAGGACGGTGCCGTTGTGCCGCCGGAAACAACAATTGCAAGTTACATGCGTTACACCGCGGACGGAAGGATCGAGGGTGGACAGGGCAATCCCGATTTTGTGCCCCACGGTATGCTGGATCTGATGATCGAGTTTACCAAATCCTACTACGACCATTTCGTTCCGGCACCCGACTGACGGCAACGTGAACTCTCGGCCGTG CGAGAGTGCCACGAGTGCAGTGAGAGAAGGAAGGTGCATCACTCCCCCGTTTTCAGCAATTCCACAACTCGTA TCGTCTGCACTGCGGAAACCGATCATAACCATTACGAGCGCATAGGCATATATTTATTCACAGCA AGCTAACCAATAAAATCGTGTATCGTCAAAAAAAAAAAAAAGGGCACATGgtgttct   ]
[+] EMBL BM615480             [                                                          ccgTTGCTTAGTTTTAGTTCCACACAAATGTATGAAATAAATTAAGGATTTTCACTAGTAAAACACGCACAAACGAACCATTGCGATGGACGCCCTGAACACGTACTACAGCAAGGAGGAGTACGTGGAAACAGCTTCCGGCAACAAGGTGAGCCGCCAGACGGTACTATGCGGCTCCCAAAACATTGTCCTCCACGGGAAAGTGATCGTGCAGAGTGGGGCCATCATCCGCGGTGATTTGGCCGCCGTCCGCACCGGACGGTACTGCGTCATCTCGAAGGGTTCCGTCGTGCGGCCACCGTACAAGCAGTTCAGCAAGGGTGTTGCATTTTTCCCGCTGCAGATCGGCGATCATGTGTTCATTGGCGAGGGAGCCGTCGTTTCAGCGGCATCGATCGGTTCCTACGTTTACATTGGCAAGAATGCTGTGATA                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CNS099H4             [                                                                                                                                                                      CAGCAAGGAGGAGTACGTGGAAACAGCTTCCGGCAACAAGGTGAGCCGCCAGACGGTACTGTGCGGCTCGCAAAACATTGTCCTCCACGGGAAAGTGATCGTGCAGAGCGGGGCCATCATCCGCGGTGATTTGGCCGCCGTCCGCACCGGACGGTACTGCGTCATCTCGAAGGGTTCGGTCGTGCGGCCACCGTACAAGCAGTTCAGCAAGGGTGTTGCATTTTTCCCGCTGCAGATCGGCGATCATGTGTTCATTGGCGAGGGAGCCGTCGTTTCAGCGGCATCGATCGGTTCCTACGTTTACATCGGCAAGAATGCTGTGATAGGACGACGATGCATACTGAAGGATCACTGTATCGTGGAGGACGGTGCCGTTGTGCCGCCGGAAACAACAATTGCAAGTTACATGCGTTACACCGCGGACGGAAGGATCGAGGGTGGACAGGGCAATCCCGATTTTGTGCCCCACGGTATGCTGGATCTGATGATCGAGTTTACCAAATCCTACTACGACCATTTCGTTCCGGCACCCGACTGACGGCAACGTGAACTCTCGGCCGTGCCGAGAGTGCCACGAGTGCAGTGAGAGAAGGAAGGTGCATCACTCCCCCGTTTTCAGCAATTCCACAACTCGTA TCGTCTGCACTGCGGAAACCGATCATAACCATTACGAGCGC  AGGCATATATTTATTCACAGCA AGCTAACCAATAAAATCGTGTATCGTCccccc                            ]




>consensus_6972#0
TTCCTCGAGAACTGTTGGCCAACTGGACTGTGCAGTCGTAGATTTGTTATGAAAAGTGCA
ATTGTTTAGCTTTAGTTCCACACAAATGTATGAAATAAATTAAGGATTTTCACCAGTAAA
ACACGCACAAACGAAACATTGCGATGGACGCCCTGAACACGTACTACAGCAAGGAGGAGT
ACGTGGAAACAGCTTCCGGCAACAAGGTGAGCCGCCAGACGGTACTGTGCGGCTCGCAAA
ACATTGTCCTCCACGGGAAAGTGATCGTGCAGAGCGGGGCCATCATCCGCGGTGATTTGG
CCGCCGTCCGCACCGGACGGTACTGCGTCATCTCGAAGGGTTCGGTCGTGCGGCCACCGT
ACAAGCAGTTCAGCAAGGGTGTTGCATTTTTCCCGCTGCAGATCGGCGATCATGTGTTCA
TTGGCGAGGGAGCCGTCGTTTCAGCGGCATCGATCGGTTCCTACGTTTACATCGGCAAGA
ATGCTGTGATAGGACGACGATGCATACTGAAGGATAACTGTATCGTGGAGGACGGTGCCG
TTGTGCCGCCGGAAACAACAATTGCAAGTTACATGCGTTACACCGCGGACGGAAGGATCG
AGGGTGGACAGGGCAATCCCGATTTTGTGCCCCACGGTATGCTGGATCTGATGATCGAGT
TTACCAAATCCTACTACGACCATTTCGTTCCGGCACCCAACTGACGGCAACGTGAACTCT
CGGCCGTGCCGAGAGTGCCACGAGTGCAGTGAGAGAAGGAAGGTGCATCACTCCCCCGTT
TTCAGCAATTCCACAACTCGTATCGTCTGCACTGCGGAAACCGATCATAACCATTACGAG
CGCATAGGCATATATTTATTCACAGCAAGCTAACCAATAAAATCGTGTATCGTCAAAAAA
AAAAAAAAGGCCACATGTGCCCGAGCC

consensusID : consensus_6972#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence

                              [TCCACACAAATCGATGGACGCCCTGAACACGTACTACAGTAAGGAGGAGTACGTGGAAACAGCTTCCGGCAACAAGGTGAGCCGCCAGACGGTACTATGCGGCTCCCAAAACATTGTCCTCCACGGGAAAGTGATCGTGCAGAGTGGGGCCATCATCCGCGGTGATTTGGCCGCCGTCCGCACCGGACGGTACTGCGTCATCTCGAAGGGTTCCGTCGTGCGGCCACCGTACAAGCAGTTCAGCAAGGGTGTTGCATTTTTCCCGCTGCAGATCGGCGATCATGTGTTCATTGGCGAGGGAGCCGTCGTTTCAGCGGCATCGATCGGTTCCTACGTTTACATTGGCAAGAATGCTGTGATAGGACGACGATGCATACTGAAGGATAACTGTATCGTGGAGGACGGTGCCGTTGTGCCGCCGGAAACAACAATTGCAAGTTACATGCGTTACACTGCGGACGGAAGGATCGAGGGTGGACAGGGCAATCCCGATTTTGTGCCCCACGGTATGCTGGATCTGATGATCGAGTTTACCAAATCCTACTACGACCATTTCGTTCCGGCACCCAACTGACGGCAACGTGAACTCTTGGCCGTGCCGAGAGTGCCACGAGTGCAGTGATAGAAGGAANGTGCATCACTCCCCCCGTTTTCAGCAATTCCACAACTCGCATCGTCTGCACTGCGGAAACT]

[+] EMBL BX627709             [TCCACACAAATCGATGGACGCCCTGAACACGTACTACAGTAAGGAGGAGTACGTGGAAACAGCTTCCGGCAACAAGGTGAGCCGCCAGACGGTACTATGCGGCTCCCAAAACATTGTCCTCCACGGGAAAGTGATCGTGCAGAGTGGGGCCATCATCCGCGGTGATTTGGCCGCCGTCCGCACCGGACGGTACTGCGTCATCTCGAAGGGTTCCGTCGTGCGGCCACCGTACAAGCAGTTCAGCAAGGGTGTTGCATTTTTCCCGCTGCAGATCGGCGATCATGTGTTCATTGGCGAGGGAGCCGTCGTTTCAGCGGCATCGATCGGTTCCTACGTTTACATTGGCAAGAATGCTGTGATAGGACGACGATGCATACTGAAGGATAACTGTATCGTGGAGGACGGTGCCGTTGTGCCGCCGGAAACAACAATTGCAAGTTACATGCGTTACACTGCGGACGGAAGGATCGAGGGTGGACAGGGCAATCCCGATTTTGTGCCCCACGGTATGCTGGATCTGATGATCGAGTTTACCAAATCCTACTACGACCATTTCGTTCCGGCACCCAACTGACGGCAACGTGAACTCTTGGCCGTGCCGAGAGTGCCACGAGTGCAGTGATAGAAGGAANGTGCATCACTCCCCCCGTTTTCAGCAATTCCACAACTCGCATCGTCTGCACTGCGGAAACT]




>consensus_6972#1
TCCACACAAATCGATGGACGCCCTGAACACGTACTACAGTAAGGAGGAGTACGTGGAAAC
AGCTTCCGGCAACAAGGTGAGCCGCCAGACGGTACTATGCGGCTCCCAAAACATTGTCCT
CCACGGGAAAGTGATCGTGCAGAGTGGGGCCATCATCCGCGGTGATTTGGCCGCCGTCCG
CACCGGACGGTACTGCGTCATCTCGAAGGGTTCCGTCGTGCGGCCACCGTACAAGCAGTT
CAGCAAGGGTGTTGCATTTTTCCCGCTGCAGATCGGCGATCATGTGTTCATTGGCGAGGG
AGCCGTCGTTTCAGCGGCATCGATCGGTTCCTACGTTTACATTGGCAAGAATGCTGTGAT
AGGACGACGATGCATACTGAAGGATAACTGTATCGTGGAGGACGGTGCCGTTGTGCCGCC
GGAAACAACAATTGCAAGTTACATGCGTTACACTGCGGACGGAAGGATCGAGGGTGGACA
GGGCAATCCCGATTTTGTGCCCCACGGTATGCTGGATCTGATGATCGAGTTTACCAAATC
CTACTACGACCATTTCGTTCCGGCACCCAACTGACGGCAACGTGAACTCTTGGCCGTGCC
GAGAGTGCCACGAGTGCAGTGATAGAAGGAANGTGCATCACTCCCCCCGTTTTCAGCAAT
TCCACAACTCGCATCGTCTGCACTGCGGAAACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6972#0      TTCCTCGAGAACTGTTGGCCAACTGGACTGTGCAGTCGTAGATTTGTTATGAAAAGTGCA 60
consensus_6972#1      ------------------------------------------------------------
                                                                                  

consensus_6972#0      ATTGTTTAGCTTTAGTTCCACACAAATGTATGAAATAAATTAAGGATTTTCACCAGTAAA 120
consensus_6972#1      ------------------------------------------------------------
                                                                                  

consensus_6972#0      ACACGCACAAACGAAACATTGCGATGGACGCCCTGAACACGTACTACAGCAAGGAGGAGT 180
consensus_6972#1      ----------TCCACACAAATCGATGGACGCCCTGAACACGTACTACAGTAAGGAGGAGT 50
                                 * * ***   **************************** **********

consensus_6972#0      ACGTGGAAACAGCTTCCGGCAACAAGGTGAGCCGCCAGACGGTACTGTGCGGCTCGCAAA 240
consensus_6972#1      ACGTGGAAACAGCTTCCGGCAACAAGGTGAGCCGCCAGACGGTACTATGCGGCTCCCAAA 110
                      ********************************************** ******** ****

consensus_6972#0      ACATTGTCCTCCACGGGAAAGTGATCGTGCAGAGCGGGGCCATCATCCGCGGTGATTTGG 300
consensus_6972#1      ACATTGTCCTCCACGGGAAAGTGATCGTGCAGAGTGGGGCCATCATCCGCGGTGATTTGG 170
                      ********************************** *************************

consensus_6972#0      CCGCCGTCCGCACCGGACGGTACTGCGTCATCTCGAAGGGTTCGGTCGTGCGGCCACCGT 360
consensus_6972#1      CCGCCGTCCGCACCGGACGGTACTGCGTCATCTCGAAGGGTTCCGTCGTGCGGCCACCGT 230
                      ******************************************* ****************

consensus_6972#0      ACAAGCAGTTCAGCAAGGGTGTTGCATTTTTCCCGCTGCAGATCGGCGATCATGTGTTCA 420
consensus_6972#1      ACAAGCAGTTCAGCAAGGGTGTTGCATTTTTCCCGCTGCAGATCGGCGATCATGTGTTCA 290
                      ************************************************************

consensus_6972#0      TTGGCGAGGGAGCCGTCGTTTCAGCGGCATCGATCGGTTCCTACGTTTACATCGGCAAGA 480
consensus_6972#1      TTGGCGAGGGAGCCGTCGTTTCAGCGGCATCGATCGGTTCCTACGTTTACATTGGCAAGA 350
                      **************************************************** *******

consensus_6972#0      ATGCTGTGATAGGACGACGATGCATACTGAAGGATAACTGTATCGTGGAGGACGGTGCCG 540
consensus_6972#1      ATGCTGTGATAGGACGACGATGCATACTGAAGGATAACTGTATCGTGGAGGACGGTGCCG 410
                      ************************************************************

consensus_6972#0      TTGTGCCGCCGGAAACAACAATTGCAAGTTACATGCGTTACACCGCGGACGGAAGGATCG 600
consensus_6972#1      TTGTGCCGCCGGAAACAACAATTGCAAGTTACATGCGTTACACTGCGGACGGAAGGATCG 470
                      ******************************************* ****************

consensus_6972#0      AGGGTGGACAGGGCAATCCCGATTTTGTGCCCCACGGTATGCTGGATCTGATGATCGAGT 660
consensus_6972#1      AGGGTGGACAGGGCAATCCCGATTTTGTGCCCCACGGTATGCTGGATCTGATGATCGAGT 530
                      ************************************************************

consensus_6972#0      TTACCAAATCCTACTACGACCATTTCGTTCCGGCACCCAACTGACGGCAACGTGAACTCT 720
consensus_6972#1      TTACCAAATCCTACTACGACCATTTCGTTCCGGCACCCAACTGACGGCAACGTGAACTCT 590
                      ************************************************************

consensus_6972#0      CGGCCGTGCCGAGAGTGCCACGAGTGCAGTGAGAGAAGGAAGGTGCATCACTCCCCC-GT 779
consensus_6972#1      TGGCCGTGCCGAGAGTGCCACGAGTGCAGTGATAGAAGGAANGTGCATCACTCCCCCCGT 650
                       ******************************* ******** *************** **

consensus_6972#0      TTTCAGCAATTCCACAACTCGTATCGTCTGCACTGCGGAAACCGATCATAACCATTACGA 839
consensus_6972#1      TTTCAGCAATTCCACAACTCGCATCGTCTGCACTGCGGAAACT----------------- 693
                      ********************* ********************                  

consensus_6972#0      GCGCATAGGCATATATTTATTCACAGCAAGCTAACCAATAAAATCGTGTATCGTCAAAAA 899
consensus_6972#1      ------------------------------------------------------------
                                                                                  

consensus_6972#0      AAAAAAAAAGGCCACATGTGCCCGAGCC 927
consensus_6972#1      ----------------------------