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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6982#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 708 fasta sequence
[GAATCGCCCGAGTCAAACAGTGAAGTGTATTACATCCCACGAGTGTAGTACTCGTGTATCTCTGTGTGTTGTGTATCGGTACGTGTGTGTGTGTGTGTGTGTGCAAGCTCGTATGTAGAGTTTGTCTAGTGGGGCCAGAAAAAAAAAGAAACG-GTGTAAG-CGC-TGTGATTAATT-GGGCAACATGACGGTGGGCATTACCAGCACGCTACAGTTCATCGCCGGCAATTCGGCGCAGTACATGAAACCCGGCCCGAATGGTCAATCACAGCACGCTGCGGCTGCGGCTGCGGCCGCTGCAGCCAGCTCCACCGTCCCGGACACGAACAACAACGAGATGGAGGACGATCGTACCGTAAGCGACAAGGATATCGACAGCTATCTCAAGCACTACAACCGTTGGCAGCAGTCCGCCTGGGGCCGCACGCTCTCCGACCTGGTGAAGCGGTACCTCGGCTACGAGTTCGAAGACGAAGTCAAGTGGAACAATGTGTTCATGA-TCGGGATCTTTCACGTGATTGCGGTGTGGTCCTTTCTGCACTACGTATGGCAGGCCACACCGATCCCCTATCTCGGGGGTTCCTCCGTCNGCNNGCTGTGCCGGGGTNCGGGGGTGACCGGGCGGGCGTACCCCCGCCTTCTGGTTGCCCCCCCGGTTCGTTACCAGGGCGAAACCTGCCCGCTGGCGCCTTCCNTCCTGGATGGTGCNTG]
[+] EMBL AL931526 [GAATCGCCCGAGTCAAACAGTGAAGTGTATTACATCCCACGAGTGTAGTACTCGTGTATCTCTGTGTGTTGTGTATCGGTACGTGTGTGTGTGTGTGTGTGTGCAAGCTCGTATGTAGAGTTTGTCTAGTGGGGCCAGAAAAAAAAAGAAACG GTGTAAG CGC TGTGATTAATT GGGCAACATGACGGTGGGCATTACCAGCACGCTACAGTTCATCGCCGGCAATTCGGCGCAGTACATGAAACCCGGCCCGAATGGTCAATCACAGCACGCTGCGGCTGCGGCTGCGGCCGCTGCAGCCAGCTCCACCGTCCCGGACACGAACAACAACGAGATGGAGGACGATCGTACCGTAAGCGACAAGGATATCGACAGCTATCTCAAGCACTACAACCGTTGGCAGCAGTCCGCCTGGGGCCGCACGCTCTCCGACCTGGTGAAGCGGTACCTCGGCTACGAGTTCGAAGACGAAGTCAAGTGGAACAATGTGTTCATGA TCGGGATCTTTCACGTGATTGCGGTGTGGTCCTTTCTGCACTACGTATGGCAGGCCACAC ]
[+] EMBL BX624377 [ tgaggAGAAACGTGTGTAAGNCGCTTGTGATTAATTAGGGCAACATGACGGTGGGCATTACCAGCACGCTACAGTTCATCGCCGGCAATTCGGCCCAGTACATGAAACCCGGCCCGAATGGTCAATCACAGCAAGCGGCGGCGGCGGCTGCGGCCGCTGCAGCCAGCTCCACCGTCCCGGACACGAACAACAACGAGATGGAGGACGATCGTACCGTAAGCGACAAGGATATCGACAGCTATCTCAAGCACTACAACCGTTGGCAGCAGTCGGCCTGGGGCCGCACGCTCTCCGACCTGGTGAAGCGGTACCTCGGCTACGAGTTCAAAGACGAAGTTCAGTGGNNCAATGTGTTCATGATTCGGGATC TTNACGTGATTGCGGTGTGGTCC TTCTGCACTACGTCTGGCCGGGCCCACCGATCCCCTATCTCGGGGGTTCCTCCGTCNGCNNGCTGTGCCGGGGTNCGGGGGTGACCGGGCGGGCGTACCCCCGCCTTCTGGTTGCCCCCCCGGTTCGTTACCAGGGCGAAACCTGCCCGCTGGCGCCTTCCNTCCTGGATGGTGCNTG]
consensusID : consensus_6982#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence
[ATCGCCACGAGGTCTATCATACACAGCTACCTACTCCCGGTGGGTTTCNTTGGGGTGGGTTACAGCGGGCCTGCGGTATTCGGGAGTGTGTTGTGTAAGCGGCAAGAAATCGATTGTTTCTTTCCCGCAGTGGCAGTTTCGGTGGTTTGGTGGAAAGAGAAAGTTCAAACGCTTTTTCGAATCGTAACGGGCCAACAGCAAAAAGTGTCTTGCAAGATCTCGAAATACTTAAGCGAAACAGTTGCCAAACAGTGAAGTGTATTACATCCCACGAGTGTAGTACTCGTGTATCTCTGTGTGTTTGTGTATCGGTACGTGTGTGTGTGTGTGTGTGTGCAAGCTCGTATGTAGAGTTTGTCTAGTGGGGCCAGAAAAAAAAGAAACGGTGTAAGCGCTGTGATTAATTGGGCAACATGACGGTGGGCATTACCAGCACGCTACAGTTCATCGCCGGCAATTCGGCGCAGTACATGAAACCCGGCCGAATGGTCAATCACAGGCACGCTGCGGCTGCGGCTGCGGNCGCATGCAGCCAGGTCCACCGTCCCAGGACACGAACAANAACGAGATGGAGGACGATCGTACCGTAAGCGACAAGGATATCGACAGGTATCTCAAGCACTAACAACCNGTTGGCAGCAGTCCGCACTGGGGCCGGAACGCNCTTCCGAGCCTGGT]
[+] EMBL BX469530 [ATCGCCACGAGGTCTATCATACACAGCTACCTACTCCCGGTGGGTTTCNTTGGGGTGGGTTACAGCGGGCCTGCGGTATTCGGGAGTGTGTTGTGTAAGCGGCAAGAAATCGATTGTTTCTTTCCCGCAGTGGCAGTTTCGGTGGTTTGGTGGAAAGAGAAAGTTCAAACGCTTTTTCGAATCGTAACGGGCCAACAGCAAAAAGTGTCTTGCAAGATCTCGAAATACTTAAGCGAAACAGTTGCCAAACAGTGAAGTGTATTACATCCCACGAGTGTAGTACTCGTGTATCTCTGTGTGTTTGTGTATCGGTACGTGTGTGTGTGTGTGTGTGTGCAAGCTCGTATGTAGAGTTTGTCTAGTGGGGCCAGAAAAAAAAGAAACGGTGTAAGCGCTGTGATTAATTGGGCAACATGACGGTGGGCATTACCAGCACGCTACAGTTCATCGCCGGCAATTCGGCGCAGTACATGAAACCCGGCCGAATGGTCAATCACAGGCACGCTGCGGCTGCGGCTGCGGNCGCATGCAGCCAGGTCCACCGTCCCAGGACACGAACAANAACGAGATGGAGGACGATCGTACCGTAAGCGACAAGGATATCGACAGGTATCTCAAGCACTAACAACCNGTTGGCAGCAGTCCGCACTGGGGCCGGAACGCNCTTCCGAGCCTGGT]
consensusID : consensus_6982#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence
[GCAGAATCGCCCGAGGTTTAAGACAAGCAGACACAGCACGGAGCGTGTGCGCTTCTCCTAATCCGCCTGTTCAAATCGGTCGGTACATACTACGTCGGGCACATCCTACACTTCCTTCATACACAGCTACCCTACTCCCGGTGGGTTTCTATGGGGTGGGTTACAGCCGGGCCTGCGGTATTCGGGAGCTGTGTANGTGTAAGCGGCAACGAAATCGATTGTTCTCTTTCCCGCAGTGGCCAGTTTCGCGTGGTTATTGGTGGAACAGGAGAAAGTTCCAAAACGCTTNTTCGAATCGTAACGGGCACAAACAGGAAAAAAGTGTCTTGCCNGATCTCGAAATACTTAAGCGAAACAGNNTTGGCAAATAGTGCAAGTGTATTACATCCCACGAGTGTAGTACTCGTGGTATCTCTGTGTGTTTAGTAGTATCGGTACGTGTGCTGTGTAGTAGTAGTAGTAGTGCAAGCTCGTATTGTAGAGTTCTGTCTAATGGGGCCAGAAAACACAANAGAAACGGTGTAAGCGCTGTGATTAATNGGGCAACATGACGGTGGGCATTACCAGCCACGCTACAGGTTCATACGCCGGCAATTCGGCGCAGACATGAAACCCGGCCGAATGGTCAATCACAGCACGCTGCGGCTGCGGCTGCGGCGCTGCA]
[+] EMBL AL697601 [GCAGAATCGCCCGAGGTTTAAGACAAGCAGACACAGCACGGAGCGTGTGCGCTTCTCCTAATCCGCCTGTTCAAATCGGTCGGTACATACTACGTCGGGCACATCCTACACTTCCTTCATACACAGCTACCCTACTCCCGGTGGGTTTCTATGGGGTGGGTTACAGCCGGGCCTGCGGTATTCGGGAGCTGTGTANGTGTAAGCGGCAACGAAATCGATTGTTCTCTTTCCCGCAGTGGCCAGTTTCGCGTGGTTATTGGTGGAACAGGAGAAAGTTCCAAAACGCTTNTTCGAATCGTAACGGGCACAAACAGGAAAAAAGTGTCTTGCCNGATCTCGAAATACTTAAGCGAAACAGNNTTGGCAAATAGTGCAAGTGTATTACATCCCACGAGTGTAGTACTCGTGGTATCTCTGTGTGTTTAGTAGTATCGGTACGTGTGCTGTGTAGTAGTAGTAGTAGTGCAAGCTCGTATTGTAGAGTTCTGTCTAATGGGGCCAGAAAACACAANAGAAACGGTGTAAGCGCTGTGATTAATNGGGCAACATGACGGTGGGCATTACCAGCCACGCTACAGGTTCATACGCCGGCAATTCGGCGCAGACATGAAACCCGGCCGAATGGTCAATCACAGCACGCTGCGGCTGCGGCTGCGGCGCTGCA]
consensusID : consensus_6982#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 434 fasta sequence
[CCGCGCGAGACAAGCAGACAACAGCACGGAGCGTGTGCGCTTCTCCTAA--CGCCTGTTCAAATCGGTCGG------TACGCCGGGCACATCCTACACTTCCTTCATACACAGCTACCCTACTCCCGGTGGGTTTCTTGGGGAGGGTTACAGCGGGCCTGCGGTATTCGGGAGTGTGTTGTGTAAGCGGCAAGAAATCGATTGTTTCTTTCCCGCAGTGGCTGTTTCGGTGGTTTGGTGGAAAGAGAAAGTTCAAACGCTTTTTCGAATCGTAACGGGCCAACGGCAAAAAGGGTCTTGCAAGATCTCGAAATACTTAAGCGAAACAGTTGCCAAACAGTGAAGTGTATTACATCCCGCGAGTGTTTAGTGCTCGTGTATCGCTGTGTGTTTGTGTATCGATACGTGTGTGTGTGTGTGTGCAAGCTCGTATGTAGAGTTTG]
[+] EMBL BM594362 [CCGCGCGAGACAAGCAGACAACAGCACGGAGCGTGTGCGCTTCTCCTAA CGCCTGTTCAAATCGGTCGG TACGCCGGGCACATCCTACACTTCCTTCATACACAGCTACCCTACTCCCGGTGGGTTTCTTGGGGAGGGTTACAGCGGGCCTGCGGTATTCGGGAGTGTGTTGTGTAAGCGGCAAGAAATCGATTGTTTCTTTCCCGCAGTGGCTGTTTCGGTGGTTTGGTGGAAAGAGAAAGTTCAAACGCTTTTTCGAATCGTAACGGGCCAACGGCAAAAAGGGTCTTGCAAGATCTCGAAATACTTAAGCGAAACAGTTGCCAAACAGTGAAGTGTATTACATCCCGCGAGTGTTTAGTGCTCGTGTATCGCTGTGTGTTTG ]
[+] EMBL BX627993 [ TTCTCCTAATCCGCCTGTTCAAATCGGTCGGTACATCTACGCCGGGCACATCCTACACTTCCTTCATACACAGCTACCCTACTCCCGGTGGGTTTCTTGGGGAGGGTTACCGCGGGCCTGCGGTATTCGGGAGTGTGTTGTGTAAGCGGCAAGAAATCGATTGCTTCTTTCCCGCAGTGGCAGTTTCGGTGGTTTGGTGGAAAGAGAAAGTTCAAACGCTTTTTCGAATCGTAACGGGCCGACAGCAAAAAGGGTCTTACTAGATCTCGAAATACTTAAGCGAAACAGTTGCCAAACAGTGAAGTGTATTACATCCCGCGAGTGTGTAGTGCTCGTGTATCTCTGTGTGTTTGTGTATCGATACGTGTGTGTGTGTGTGTGCAAGCTCGTATGTAGAGTTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6982#2 ---------------------GCAGAATCGCCCGAGGTTTAAGACAAGCAGACA--CAGC 37
consensus_6982#3 ----------------------------------CCGCGCGAGACAAGCAGACAA-CAGC 25
consensus_6982#1 ------------------------------------------------------------
consensus_6982#0 GAATCGCCCGAGTCAAACAGTGAAGTGTATTACATCCCACGAGTGTAGTACTCGTGTATC 60
consensus_6982#2 ACGGAGCGT-GTGCGCTTCTCCTAATCCGCCTGTTCAAATCGGTCGGTACATACTACGTC 96
consensus_6982#3 ACGGAGCGT-GTGCGCTTCTCCTAA--CGCCTGTTCAAATCGGTCGGTAC-------GCC 75
consensus_6982#1 ------------------------------------------------------------
consensus_6982#0 TCTGTGTGTTGTGTATCGGTACGTGTGTGTGTGTGTGTGTGTGCAAGCTCGT---ATGTA 117
consensus_6982#2 GGGCACATCCTACACTTCCTTCATACACA-GCTACCCTACTCCCGGTGGGTTTCTATGGG 155
consensus_6982#3 GGGCACATCCTACACTTCCTTCATACACA-GCTACCCTACTCCCGGTGGGTTTCT-TGGG 133
consensus_6982#1 ----ATCGCCACGAGGTCTATCATACACA-GCTACC-TACTCCCGGTGGGTTTCNTTGGG 54
consensus_6982#0 GAGTTTGTCTAGTGGGGCCAGAAAAAAAAAGAAACGGTGTAAGCGCTGTGATTAATTGGG 177
* * * * * * * ** * ** ** * ** ****
consensus_6982#2 GTGGGTTACAGCCGGGCCTGC-GGTATTCGGGAGCTGTGTANGTGTAAGCGGCAACGAAA 214
consensus_6982#3 GAGGGTTACAGC-GGGCCTGC-GGTATTCGGGAG-TGTGT-TGTGTAAGCGGCAA-GAAA 188
consensus_6982#1 GTGGGTTACAGC-GGGCCTGC-GGTATTCGGGAG-TGTGT-TGTGTAAGCGGCAA-GAAA 109
consensus_6982#0 CAACATGACGGTGGGCATTACCAGCACGCTACAGTTCATCGCCGGCAATT--CGGCGCAG 235
* ** * ** * * * * * ** * * ** * * *
consensus_6982#2 TCGATTGTTCTCTTTCCCGCAGTGGCCAGTTTCGCGTGGTTATTGGTGGAACAGGAGAAA 274
consensus_6982#3 TCGATTGTT-TCTTTCCCGCAGTGGCT-GTTTCG-GTGGTT--TGGTGGAA--AGAGAAA 241
consensus_6982#1 TCGATTGTT-TCTTTCCCGCAGTGGCA-GTTTCG-GTGGTT--TGGTGGAA--AGAGAAA 162
consensus_6982#0 TACATGAAA-CCCGGCCCG-AATGGTCAATCACAGCACGCTG-CGGCTGCGGCTGCGGCC 292
* ** * **** * *** * * * * ** * * *
consensus_6982#2 GTTCCAAAACGCTTNTTCGAATCGTA-ACGGGCACAAACAGGAAAAAAGT--GTCTTGC- 330
consensus_6982#3 GTTC--AAACGCTTTTTCGAATCGTA-ACGGGCC--AACGGCAAAAAGG---GTCTTGC- 292
consensus_6982#1 GTTC--AAACGCTTTTTCGAATCGTA-ACGGGCC--AACAGCAAAAAGT---GTCTTGC- 213
consensus_6982#0 GCTGCAGCCAGCTCCACCGTCCCGGACACGAACAACAACGAGATGGAGGACGATCGTACC 352
* * *** ** ** * *** * *** * * ** * *
consensus_6982#2 ----------CNGATCTCGAAA--TA-CTTAAGCGAAACAGNNTTGGCAAATAGTGC--- 374
consensus_6982#3 ----------AAGATCTCGAAA--TA-CTTAAGCGAAACAGTT--GCCAAACAGTG---- 333
consensus_6982#1 ----------AAGATCTCGAAA--TA-CTTAAGCGAAACAGTT--GCCAAACAGTG---- 254
consensus_6982#0 GTAAGCGACAAGGATATCGACAGCTATCTCAAGCACTACAACCGTTGGCAGCAGTCCGCC 412
*** **** * ** ** **** *** * ***
consensus_6982#2 AAGTGTATTACATCCCACGAGTG--TAGTACTCGTGGTATCTCTGTGTGTTTAGTAGTAT 432
consensus_6982#3 AAGTGTATTACATCCCGCGAGTGTTTAGTGCTCGTG-TATCGCTGTGTGTTTGT--GTAT 390
consensus_6982#1 AAGTGTATTACATCCCACGAGTG--TAGTACTCGTG-TATCTCTGTGTGTTTGT--GTAT 309
consensus_6982#0 TGGGGCCGCACGCTCTCCGACCTGGTGAAGCG-GTACCTCGGCTACGAGTTCGAAGACGA 471
* * ** * *** * * ** ** * ***
consensus_6982#2 CGGTACGTGTGC---TGTGTA-GTAGTAGTAGTAGTGCAAGCTCGTATTGTAGAGTTCTG 488
consensus_6982#3 CGATACGTGTG----TGTGT--GTGT--------GTGCAAGCTCGTAT-GTAGAGTTTG- 434
consensus_6982#1 CGGTACGTGTG----TGTGT--GTGTGTGT----GTGCAAGCTCGTAT-GTAGAGTTTG- 357
consensus_6982#0 AGTCAAGTGGAACAATGTGTTCATGATCGGGATCTTTCACGTGATTGCGGTGTGGTCCTT 531
* * *** ***** * * ** * * ** **
consensus_6982#2 TCTAATGGGGCCAGAAAACACAANAGAAACGGTGTAAGCGCTGTGATTAATNGGGCAACA 548
consensus_6982#3 ------------------------------------------------------------
consensus_6982#1 TCTAGTGGGGCCAGAAAA---AAAAGAAACGGTGTAAGCGCTGTGATTAATTGGGCAACA 414
consensus_6982#0 TCTGCACTACGTATGGCAGGCCACACCGATCCCCTAT-CTCGGGGGTTCCTCCGTCNGCN 590
consensus_6982#2 TGACGGTGGGCATTACCAGCCACGCTACAGGTTCATACGCCGGCAATTCGGCGCAG-ACA 607
consensus_6982#3 ------------------------------------------------------------
consensus_6982#1 TGACGGTGGGCATTACCAGC-ACGCTACAG--TTCATCGCCGGCAATTCGGCGCAGTACA 471
consensus_6982#0 NGCTGTGCCGGGGTNCGGGGGTGACCGGGCGGGCGTACCCCCGCCTTCTGGTTGCCCCCC 650
consensus_6982#2 TGAAACCCGGCCGAATGGTCAATCACAG-CACGCTGCGGCTGCGGCTGCGGCGCTGCA-- 664
consensus_6982#3 ------------------------------------------------------------
consensus_6982#1 TGAAACCCGGCCGAATGGTCAATCACAGGCACGCTGCGGCTGCGGCTGCGGNCGCATGCA 531
consensus_6982#0 CGGTTCGTTACCAGGGCGAAACCTGCCCGCTGGCGCCTTCCNTCCTGGATGGTGCNTG-- 708
consensus_6982#2 ------------------------------------------------------------
consensus_6982#3 ------------------------------------------------------------
consensus_6982#1 GCCAGGTCCACCGTCCCAGGACACGAACAANAACGAGATGGAGGACGATCGTACCGTAAG 591
consensus_6982#0 ------------------------------------------------------------
consensus_6982#2 ------------------------------------------------------------
consensus_6982#3 ------------------------------------------------------------
consensus_6982#1 CGACAAGGATATCGACAGGTATCTCAAGCACTAACAACCNGTTGGCAGCAGTCCGCACTG 651
consensus_6982#0 ------------------------------------------------------------
consensus_6982#2 ---------------------------
consensus_6982#3 ---------------------------
consensus_6982#1 GGGCCGGAACGCNCTTCCGAGCCTGGT 678
consensus_6982#0 ---------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||