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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6984#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1406 fasta sequence
[TTCCTATCCAATTAAACAGCCACTGAAAACGACGAAATGTGCGTGCGTGTGATAATTGCTAAGTCACAGTCAAGCTAGAGCGGTAGGCAGTCAGGCAGACAGGCAAAAACTTCACTTCCATGGAGATGGTGCAGCAGTACGCGTGTTGAAGTGTTTGTACCGCACCGCATCGCACCGGTTTTTTGGAGGGTCGAGAAGCGTAGAAGATAACGGGCGCAAACACTGCATATTGAGGTGAGGCCTTATTGCATTAGCTTAGCTAGAGAGTAACAAAAAAAAACAAAATCTATCGATACGAAAACGCAAGCAGAGCACAGGTTACTACACTTCACCCTGCAATCTTGTTTAGTTTTTCTTCCCTTTTGTCCCGAACGGATACGTACCATACCGAAGGGCTTTGAGATAACGTTCCAAATCTATAAAGCAAACCCCGGTGCCGGTGAGTTAAGATATCGGTCAGTACTTTACTCGTAACGACCACCATCCGCTATTCCGGTCAGCAACTAAAACCCCGG-TTCACACCCGCCTCGCGTGGTCCATCCGTTTCGCTTGCGCGGTCAAGTGTTTTTAGTGGTCTAGTGGTGGAAATCCCTGGACAGTTCTTACCTATCGGTTACAGCCACCGTCTCAGATGGAGATTGTTATGTTTGTATG-TGTTTTACTTTTTTTATTTTATTTTTGGATTGTTTTATTGTAATTTTAAGCTCGTTTTAAAACCTCCAAACACCACTCCCTGTTGTGCACCATTGGAGACACAAAACAGACGACACGGAGATAAAGAGATAGATATAGAGAGAGAGAGAAACACACAAACGTTAGTACACATATTCAAAACAAAAGCCAATCATGGACTAGAGCTAGTGCCGCGTTGCTTTCAGAAAATAGTTATAAATACTTAGCGAACAAAACAGTAGTCGTCTCCCGGTTCCTTTCGTTTTTCGGGAGGACGACGATTTGGGCAATATTTAGCATTAGCACGAGTAATTAGAGCCATCGAATGCCGCCAATTGATGCAGTCTATACTGGACGTAGTAGCACCGGTAGCAGCAGCGATCCCTCAACTCCCTATACCCGTTGGTAGTTTTGTTGTTGAAGACGATTTGAATCACCGGAACTTGACATCCCCCAGACCCGTTAGTCTTCGTCTTAATTACAAATAAAAGTAAACCGAGAATTACTTCACTGCTGAATTACTTTATAGCATGATTTTCCCTTAATAGACCCTACTTCTAAGAATGACTCTTTTATGCTATCTTATTACGCCTCACTGACGTCACTACGTTGCCTTACACTGTTCGATTATTTTAAACTAGTTTAGGGAATTTTACGCCTATTGGTCATGTTATTCGACATTTGAAAAAAACACCCACAAACGTAAACACACGTTAATTNCCAGNTCCAATAAN]
[+] EMBL BX627722 [TTCCTATCCAATTAAACAGCCACTGAAAACGACGAAATGTGCGTGCGTGTGATAATTGCTAAGTCACAGTCAAGCTAGAGCGGTAGGCAGTCAGGCAGACAGGCAAAAACTTCACTTCCATGGAGATGGTGCAGCAGTACGCGTGTTGAAGTGTTTGTACCGCACCGCATCGCACCGGTTTTTTGGAGGGTCGAGAAGCGTAGAAGATAACGGGCGCAAACACTGCATATTGAGGTGAGGCCTTATTGCATTAGCTTAGCTAGAGAGTAACAAAAAAAAACAAAATCTATCGATACGAAAACGCAAGCAGAGCACAGGTTACTACACTTCACCCTGCAATCTTGTTTAGTTTTTCTTCCCTTTTGTCCCGAACGGATACGTACCATACCGAAGGGCTTTGAGATAACGTTCCAAATCTATAAAGCAAACCCCGGTGCCGGTGAGTTAAGATATCGGTCAGTACTTTACTCGTAACGACCACCATCCGCTATTCCGGTCAGCAACTAAAACCCCGGTTTCACACCCGCCTCGCGTGGTCCATCCGTTTCGCTTGCGCGGTCAAGT ]
[+] EMBL BX615050 [ ATAACGTTCCAAATCTATAAAGCAAACCCCGGTGCCGGTGAGTTAAGATATCGGACAGTACTTTACTCGTAACGACCACCATCCGCTATTCCGGTCAGCAACTAAAACCCCGG TTCACACCCGCCTCGCGTGGTCCATCCGTTTCGCTTGCGCGGTCAAGTGTTTTTAGTGGTCTAGTGGTGGAAATCCCTGGACAGTTCTTACCTATCGGTTACAGCCACCGTCTCAGATGGAGATTGTTATGTTTGTATG TGTTTTACTTTTTTTATTTTATTTTTGGATTGTTTTATTGTAATTTTAAGCTCGTTTTAAAACCTCCAAACACCACTCCCTGTTGTGCACCATTGGAGACACAAAACAGACGACACGGAGATAAAGAGATAGATATAGAGAGAGAGAGAAACACACAAACGTTAGTACACATATTCAAAACAAAAGCCAATCATGGACTAGAGCTAGTGCCGCGTTGCTTTCAGAAAATAGTTATAAATACTTAGCGAACAAAACAGTAGTCGTCTCCCGGTTCCTTTCGTTTTTCGGGAGGACGACGATTTGGGCAATATTTAGCATTAGCACGAGTAATTAGAGCCATCGAATGCCGCCAATTGATGCAGTCTATACTGGACGTAGTAGCACCGGTAGCAGCAGCGATCCCTCAACTCCCTATACCCGTTGGTAG ]
[+] EMBL BX466668 [ cATGCTGCTTT TTGTTTAATTTTTTTTCTGGATTGTTTTATTGTAATTTTAAGCTCGTTTTAAAACCTCCAAACACCACTCCCTGTTGTGCACCATTGGAGACACAAAACAGACGACACGGAGATAAAGAGATAGATATAGAGAGAGAGAGAAACACACAAACGTTAGTACACATATTCAAAACAAAAGCCAATCATGGACTAGAGCTAGTGCCGCGTTGCTTTCAGAAAATAGTTATAAATACTTAGCGAACAAAACAGTAGTCGTCTCCCGGTTCCTTTCGTTTTTCGGGAGGACGACGATTTGGGCAATATTTAGCATTAGCACGAGTAATTAGAGCCATCGAATGCCGCCAATTGATGCAGTCTATACTGGACGTAGTAGCACCGGTAGCAGCAGCGATCCCTCAACTCCCTATACCCGTTGGTAGTTTTGTTGTTGAAGACGATTTGAATCACCGGAACTTGACATCCCCCAGACCCGTTAGTCTTCGTCTTAATTACAAATAAAAGTAAACCGAGAATTACTTCACTGCTGAATTACTTTATAGCATGATTTTCCCTTAATAGACCCTACTTCTAAGAATGACTCTTTTATGCTATCTTATTACGCCTCACTGACGTCACTACGTTGCCTTACACTGTTCGATTATTTTAAACTAGTTTAGGGAATTTTACGCCTATTGGTCATGTTATTCGACATTTGAAAAAAACACCCACAAACGTAAACACACGTTAATTNCCAGNTCCAATAAN]
[-] EMBL BX619017 [ GTAGTAGCACCGGTAGCAGCAGCGATCCCTCAACTCCCTATACCCGTTGGTAGTTTTGTTGTTGAAGACGATTTGAATCACCGGAACTTGACATCCCCCAGACCCGTTAGTCTTCGTCTTAATTACAAATAAAAGTAAACCGAGAATTACT ]
consensusID : consensus_6984#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence
[ATTTGGATGGCNAGTTCTTATTACTGGGAACGGTAGGTAGCAACCGGGTAGGCAGCAAGGCGATCCCCTCAACTCNNCTATANCAGTTGGTAGTTTTTGNTGGGTTGAANGAACNGATTTTNGNAATTCACCCNGGGGAANCNTTNGNAACAATTCCCCCCCCCAGAAACCCCCGNNTTAGGTTNNTTCNGTNCGTGGGANTGACGGGGANTGGGGAGTNGANACCGAGAATTACTTCACTGCTGGAATTACTTTATAGCATGATTTTCCCTTAATAGACCCTACTTCTAAGAATGACTCTTTTATGCTATCTTATTACGCCTCACTGACGTCACTACGTTGCCTTACACTGTTCGATTATTTAAACTAGTTTAGGAATTTTACGCCTATTGGTCATGTTATTCGACATTTGAAAAAAACACACACAACGTAGACAACGTTGAATGTCCAGTATCCGAATAAGTAACTACCGCCTATCTAATACTGCGTCTAATATTTACAACCCCCGCCGTAAATGAGGTACCCCAATCGCCCGAAACTGTTCCTACAATTCCTCCAGATATTNCCCCCACGGATTTTTGTTGAGCTTCAAGCGCTCCGGTCCGC]
[-] EMBL BX619638 [ATTTGGATGGCNAGTTCTTATTACTGGGAACGGTAGGTAGCAACCGGGTAGGCAGCAAGGCGATCCCCTCAACTCNNCTATANCAGTTGGTAGTTTTTGNTGGGTTGAANGAACNGATTTTNGNAATTCACCCNGGGGAANCNTTNGNAACAATTCCCCCCCCCAGAAACCCCCGNNTTAGGTTNNTTCNGTNCGTGGGANTGACGGGGANTGGGGAGTNGANACCGAGAATTACTTCACTGCTGGAATTACTTTATAGCATGATTTTCCCTTAATAGACCCTACTTCTAAGAATGACTCTTTTATGCTATCTTATTACGCCTCACTGACGTCACTACGTTGCCTTACACTGTTCGATTATTTAAACTAGTTTAGGAATTTTACGCCTATTGGTCATGTTATTCGACATTTGAAAAAAACACACACAACGTAGACAACGTTGAATGTCCAGTATCCGAATAAGTAACTACCGCCTATCTAATACTGCGTCTAATATTTACAACCCCCGCCGTAAATGAGGTACCCCAATCGCCCGAAACTGTTCCTACAATTCCTCCAGATATTNCCCCCACGGATTTTTGTTGAGCTTCAAGCGCTCCGGTCCGC]
consensusID : consensus_6984#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[GCCCGAGGTTAGGCGTTGTTGTAGTGAACAAATACACGGTCCCACTGTTCGTCGTGATGGGCACCATCTGGACGGTGATGGCGGTGACGTACTACGCGACGTACGATCTGCCAATCTTCTACGACATACTGTTCGGCTTTCAGGGGCATCCTGATGTTCGTCATCTTCGTCTGCATGCCGCGCCCGTACGAAACGATCCGCCAGTGGCTCAACGAGCGGCGGTACTGCGCCTGGATGTGTCGGGTCGATCAGGTCGACGACGGTGAGGAGGCACCGATGAAGCGCCAGATGATCGCACCGATGATGGCGCGGGCGGCACCACGGGTGGCTTGCGTCCCGGACGCCGCCCAGTACAACGCCTACATGGGCGGACCGGAGCGCTTGAAGCTCAACAAAAATCCGTTTAAATATCTAGAGGAATTTTAGGAACTGTTTCGGGCGATTGGGGCACTTTACGGCGGGGTTTGTAAATATTAGACGCACGTATTAGATANGCGGTAGTTACTTATTCGGATACTGGACATTCAACGTTGTCTACGCTNTGTGTGTGTANATCAAATGTCGAATAACATGACCAATAGGTGTA]
[+] EMBL AL697609 [GCCCGAGGTTAGGCGTTGTTGTAGTGAACAAATACACGGTCCCACTGTTCGTCGTGATGGGCACCATCTGGACGGTGATGGCGGTGACGTACTACGCGACGTACGATCTGCCAATCTTCTACGACATACTGTTCGGCTTTCAGGGGCATCCTGATGTTCGTCATCTTCGTCTGCATGCCGCGCCCGTACGAAACGATCCGCCAGTGGCTCAACGAGCGGCGGTACTGCGCCTGGATGTGTCGGGTCGATCAGGTCGACGACGGTGAGGAGGCACCGATGAAGCGCCAGATGATCGCACCGATGATGGCGCGGGCGGCACCACGGGTGGCTTGCGTCCCGGACGCCGCCCAGTACAACGCCTACATGGGCGGACCGGAGCGCTTGAAGCTCAACAAAAATCCGTTTAAATATCTAGAGGAATTTTAGGAACTGTTTCGGGCGATTGGGGCACTTTACGGCGGGGTTTGTAAATATTAGACGCACGTATTAGATANGCGGTAGTTACTTATTCGGATACTGGACATTCAACGTTGTCTACGCTNTGTGTGTGTANATCAAATGTCGAATAACATGACCAATAGGTGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6984#0 TTCCTATCCAATTAAACAGCCACTGAAAACGACGAAATGTGCGTGCGTGTGATAATTGCT 60
consensus_6984#1 ------------------------------------------------------------
consensus_6984#2 ------------------------------------------------------------
consensus_6984#0 AAGTCACAGTCAAGCTAGAGCGGTAGGCAGTCAGGCAGACAGGCAAAAACTTCACTTCCA 120
consensus_6984#1 ------------------------------------------------------------
consensus_6984#2 ------------------------------------------------------------
consensus_6984#0 TGGAGATGGTGCAGCAGTACGCGTGTTGAAGTGTTTGTACCGCACCGCATCGCACCGGTT 180
consensus_6984#1 ------------------------------------------------------------
consensus_6984#2 ------------------------------------------------------------
consensus_6984#0 TTTTGGAGGGTCGAGAAGCGTAGAAGATAACGGGCGCAAACACTGCATATTGAGGTGAGG 240
consensus_6984#1 ------------------------------------------------------------
consensus_6984#2 ------------------------------------------------------------
consensus_6984#0 CCTTATTGCATTAGCTTAGCTAGAGAGTAACAAAAAAAAACAAAATCTATCGATACGAAA 300
consensus_6984#1 ------------------------------------------------------------
consensus_6984#2 ------------------------------------------------------------
consensus_6984#0 ACGCAAGCAGAGCACAGGTTACTACACTTCACCCTGCAATCTTGTTTAGTTTTTCTTCCC 360
consensus_6984#1 ------------------------------------------------------------
consensus_6984#2 ------------------------------------------------------------
consensus_6984#0 TTTTGTCCCGAACGGATACGTACCATACCGAAGGGCTTTGAGATAACGTTCCAAATCTAT 420
consensus_6984#1 ------------------------------------------------------------
consensus_6984#2 ------------------------------------------------------------
consensus_6984#0 AAAGCAAACCCCGGTGCCGGTGAGTTAAGATATCGGTCAGTACTTTACTCGTAACGACCA 480
consensus_6984#1 ------------------------------------------------------------
consensus_6984#2 ------------------------------------------------------------
consensus_6984#0 CCATCCGCTATTCCGGTCAGCAACTAAAACCCCGGTTCACACCCGCCTCGCGTGGTCCAT 540
consensus_6984#1 ------------------------------------------------------------
consensus_6984#2 ------------------------------------------------------------
consensus_6984#0 CCGTTTCGCTTGCGCGGTCAAGTGTTTTTAGTGGTCTAGTGGTGGAAATCCCTGGACAGT 600
consensus_6984#1 ------------------------------------------------------------
consensus_6984#2 ------------------------------------------------------------
consensus_6984#0 TCTTACCTATCGGTTACAGCCACCGTCTCAGATGGAGATTGTTATGTTTGTATGTGTTTT 660
consensus_6984#1 ------------------------------------------------------------
consensus_6984#2 ------------------------------------------------------------
consensus_6984#0 ACTTTTTTTATTTTATTTTTGGATTGTTTTATTGTAATTTTAAGCTCGTTTTAAAACCTC 720
consensus_6984#1 ------------------------------------------------------------
consensus_6984#2 ------------------------------------------------------------
consensus_6984#0 CAAACACCACTCCCTGTTGTGCACCATTGGAGACACAAAACAGACGACACGGAGATAAAG 780
consensus_6984#1 ------------------------------------------------------------
consensus_6984#2 ------------------------------------------------------------
consensus_6984#0 AGATAGATATAGAGAGAGAGAGAAACACACAAACGTTAGTACACATATTCAAAACAAAAG 840
consensus_6984#1 ------------------------------------------------------------
consensus_6984#2 ------------------------------------------------------------
consensus_6984#0 CCAATCATGGACTAGAGCTAGTGCCGCGTTGCTTTCAGAAAATAGTTATAAATACTTAGC 900
consensus_6984#1 ------------------------------------------------------------
consensus_6984#2 ------------------------------------------------------------
consensus_6984#0 GAACAAAACAGTAGTCGTCTCCCGGTTCCTTTCGTTTTTCGGGAGGACGACGATTTGG-G 959
consensus_6984#1 ------------------------------------------------ATTTGGATGG-C 11
consensus_6984#2 ------GCCCGAGGTTAGGCGTTGTTGTAGTGAACAAATACACGGTCCCACTGTTCGTCG 54
*
consensus_6984#0 CAATATTTAGCATTAGCACGAGTA-ATTAGAGCCATCGAATGCCGCCAATTGATGCAGTC 1018
consensus_6984#1 NAGTTCTTATTACTGGGAACGGTA-GGTAGCAACCGGGTAGGCAGCAAGGCGATCCCCTC 70
consensus_6984#2 TGATGGGCACCATCTGGACGGTGATGGCGGTGACGTACTACGCGACGTA-CGAT-CTGCC 112
* * * * * * * * * ** * *** * *
consensus_6984#0 TATACTGGACGTAGTAGC-ACCGGTAGCAGCAGCGATCCCTCAACTCCCTATACCCGTTG 1077
consensus_6984#1 AACTCNNC-TATANCAGTTGGTAGTTTTTGNTGGGTTGAANGAACNGATTTTNGNAATTC 129
consensus_6984#2 AATCTTCTACGACATACTGTTCGGCTTTCAGGGGCATCCTGATGTTCGTCATCTTCGTCT 172
* * * * * * *
consensus_6984#0 GT--AGTTTTGTTGTTGAAGACGATTTGAA-----TCACCGGAA---CTTGACATCCCCC 1127
consensus_6984#1 ACCCNGGGGAANCNTTNGNAACAATTCCCC-----CCCCCAGAAACCCCCGNNTTAGGTT 184
consensus_6984#2 GCATGCCGCGCCCGTACGAAACGATCCGCCAGTGGCTCAACGAGCGGCGGTACTGCGCCT 232
* ** ** ** *
consensus_6984#0 AGACCCGTTAG-TCTTCGTCTTAATTACAAATAAAAGTAAACCGA-GAATTACTTCACTG 1185
consensus_6984#1 NNTTCNGTNCG-TGGGANTGACGGGGANTGGGGAGTNGANACCGA-GAATTACTTCACTG 242
consensus_6984#2 GGATGTGTCGGGTCGATCAGGTCGACGACGGTGAGGAGGCACCGATGAAGCGCCAGATGA 292
** * * * ***** *** * *
consensus_6984#0 CTG-AATTACTTTATAGCATGATTTTCCCTTAATAGACCCTACTTCTAAGAATGACTCTT 1244
consensus_6984#1 CTGGAATTACTTTATAGCATGATTTTCCCTTAATAGACCCTACTTCTAAGAATGACTCTT 302
consensus_6984#2 TCGCACCGA--TGATGGCGCGGGCGGCACCACGGGTGGCTTGCGTCCCGGACGCCGCCCA 350
* * * * ** ** * * * * * * ** ** *
consensus_6984#0 TTATGCTATCTTATTACGCCTCACTGACGTCACTACGTTGCCTTACA--CTGTTCGATTA 1302
consensus_6984#1 TTATGCTATCTTATTACGCCTCACTGACGTCACTACGTTGCCTTACA--CTGTTCGATTA 360
consensus_6984#2 GTACAACGCCTACATGGGCGGACCGGAGCGCTTGAAGCTCAACAAAAATCCGTTTAAATA 410
** ** * ** * ** * * * * * * * *** * **
consensus_6984#0 TTTTAAACTAGTTTAGGGA--ATTTTACGCCTATTGGTCATGTTATT-CGACATTTGAAA 1359
consensus_6984#1 TTT-AAACTAGTTTAGG-A--ATTTTACGCCTATTGGTCATGTTATT-CGACATTTGAAA 415
consensus_6984#2 TCTAGAGGAATTTTAGGAACTGTTTCGGGCGATTGGGGCACTTTACGGCGGGGTTTGTAA 470
* * * * ****** * *** ** * ** ** *** ** **** **
consensus_6984#0 AAAACACCCACAAACGT-AAACACACGTT-AATTNCCAGNTCC--AATAAN--------- 1406
consensus_6984#1 AAAACACACACAA-CGT-AGACA-ACGTTGAATGTCCAGTATCCGAATAAGTAACTACCG 472
consensus_6984#2 ATATTAGACGCACGTATTAGATANGCGGTAGTTACTTATTCGGATACTGGACATTCAACG 530
* * * * ** * * * * ** * * * * *
consensus_6984#0 ------------------------------------------------------------
consensus_6984#1 CCTATCTAATACTGCGTCTAATATTTACAACCCCCGCCGTAAATGAGGTACCCCAATCGC 532
consensus_6984#2 TTGTCTACGCTNTGTGTGTGTANATCAAATGTCGAATAACATGACCAATAGGTGTA---- 586
consensus_6984#0 ------------------------------------------------------------
consensus_6984#1 CCGAAACTGTTCCTACAATTCCTCCAGATATTNCCCCCACGGATTTTTGTTGAGCTTCAA 592
consensus_6984#2 ------------------------------------------------------------
consensus_6984#0 --------------
consensus_6984#1 GCGCTCCGGTCCGC 606
consensus_6984#2 --------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||