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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6994#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1023 fasta sequence
[GTCTAAAACAATTTGTTCGTGAACTTCGTATACAGGCCATTGTTTCGAAGGTCGACCTGGCCCGACTCCGGACGACTCCGTCTCCAATCAACCCCGGACGACGCCTAACGACTCCGGACGACTCCGAATAATGCTGGGAGGACCTACCTTCCTAAATCGGTTCCGAAATTATCAGAGTCGGATTGGAGTCGACTCAGGATTTTTGCCAACTTTACCCATCACTACTCCTTCGTAATCACTTTCAGACCTTCGTAACTGTAATGATTTATGTACAATGTAGGACTATAACTTAATAGTATAGATATGCGTCGCCCTTTCCGTTTCCCCCACTACAATCCGGGCATTACGTAGGCAATGTTATCCAGCGTGTTCCTAAACAGCTCCCGCAGATGGTCCGAGTTCCGCTCCATGCCGGGTATTTGCAGTGTCAGACACATCAGTGGACCAAGCGAGCAGATTAAACTGTCCAACAGAACGGATAAGCTGCCGGAAACGGTAATTTGTCCCTCATGCTCTTTTAGTCGTTCT-CCAATAATTGTTAGGCTGTCTCCCAGCAGGCTGAGATGCGCAGCACATCCGTGGGCATGCATCCGGCCGGTTTAGTCGGAACCGTTTTATCCTT-CCTTGTCTTGCTCTGTGAGAATGAGTTCGTTTTGGTGCGTTTGGTCGGTTT-CCT-GCG-TTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCTTGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAGCATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCCTCAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTGCGCTTCCGCTCGATCCGTTCGAATGCGAGTCCTCGTGCTCGTCCGACTCCGTGTGCCCATCTTCCTGT-GGGGAAAGCAAATCATCCTGCGAGGAGGACAGCTTGGCCGATTGCCGATGCGAGACGGGCAGCTTCTTGCTCTTCGCTTCAAT]
[+] EMBL CNS08ZXU [GTCTAAAACAATTTGTTCGTGAACTTCGTATACAGGCCATTGTTTCGAAGGTCGACCTGGCCCGACTCCGGACGACTCCGTCTCCAATCAACCCCGGACGACGCCTAACGACTCCGGACGACTCCGAATAATGCTGGGAGGACCTACCTTCCTAAATCGGTTCCGAAATTATCAGAGTCGGATTGGAGTCGACTCAGGATTTTTGCCAACTTTACCCATCACTACTCCTTCGTAATCACTTTCAGACCTTCGTAACTGTAATGATTTATGTACAATGTAGGACTATAACTTAATAGTATAGATATGCGTCGCCCTTTCCGTTTCCCCCACTACAATCCGGGCATTACGTAGGCAATGTTATCCAGCGTGTTCCTAAACAGCTCCCGCAGATGGTCCGAGTTCCGCTCCATGCCGGGTATTTGCAGTGTCAGACACATCAGTGGACCAAGCGAGCAGATTAAACTGTCCAACAGAACGGATAAGCTGCCGGAAACGGTAATTTGTCCCTCATGCTCTTTTAGTCGTTCT CCAATAATTGTTAGGCTGTCTCCCAGCAGGCTGAGATGCGCACCACATCCGTGGGCATGCATCCGGCCGGTTTAGTCGGAACCGTTTTATCCTT CCTTGTCTTGCTCTGTGAGAATGAGTTCGTTTTGGTGCGTTTGGTCGGTTT CCT GCGCTTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCTTGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAGCATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCCTCAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTTCGCTTCCGCTCGATCCGTTCGAATGCGAGTACTCGTGCTCGTCCGACTCCGTGTGCCCATCTTCCTGTGGGGGAAAGCAAATCATCCTGCGAGGAGGACAGCTTGGCCGATTG ]
[+] EMBL CNS08GIJ [ TTGTTCGTGAACTTCGTATACAGGCCATTGTTTCGAAGGTCGACCTGGCCCGACTCCGGACGACTCCGTCTCCAATCAACCCCGGACGACGCCTAACGACTCCGGACGACTCCGAATAATGCTGGGAGGACCTACCCCCCACAATCGGTTCCGAAATTATCAGAGTCGGATTGGAGTCGACTCAGGATTTTTGCCAACTTTACCCATCACTACTCCTTCGTAATCACTTTCAGACCTTCGTAACTGTAATGATTTATGTACAATGTAGGACTATAACTTAATAGTATAGATATGCGTCGCCCTTTCCGTTTCCCCCACTACAATCCGGGCATTACGTAGGCAATGTTATCCAGCGTGTTCCTAAACAGCTCCCGCAGATGGTCCGAGTTCCGCTCCATGCCGGGTATTTGCAGTGTCAGACACATCAGTGGACCAAGCGAGCAGATTAAACTGTCCAACAGAACGGATAAGCTGCCGGAAACGGTAATTTGTCCCTCATGCTCTTTTAGTCGTTCT CCAATAATTGTTAGGCTGTCTCCCAGCAGGCTGAGATGCGC ]
[-] EMBL CNS08ZXT [ TCGGATTGGAGTCGACTCAGGATTTTTGCCAACTTTACCCATCACTACTCCTTCGTAATCACTTTCAGACCTTCGTAACTGTAATGATTTATGTACAATGTAGGACTATAACTTAATAGTATAGATATGCGTCGCCCTTTCCGTTTCCCCTACTACAATCCGGGCATTACGTAGGCAATGTTATCCAGCGTGTTCCTAAACAGCTCCCGCAGATGGTCCGAGTTCCGCTCCATGCCGGGTATTTGCAGTGTCAGACACATCAGTGGACCAAGCGAGCAGATTAAACTGTCCAACAGAACGGATAAGCTGCCGGAAACGGTAATTTGTCCCTCATGCTCTTTTAGTCGTTCT CCAATAATTGTTAGGCTGTCTCCCAGCAGGCTGAGATGCGCAGCACATCCGTGGGCATGCATCCGGCCGGTTTAGTCGGAACCGTTTTATCCTT CCTTGTCTTGCTCTGTGAGAATGAGTTCGTTTTGGTGCGTTTGGTCGGTTT CCTCGCG TTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCTTGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAGCATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCCTCAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTGCGCTTCCGCTCGATCCGTTCGAATGCGAGTCCTCGTGCTCGTCCGACTCCGTGTGCCCATCTTCCTGT GGGGAAAGCAAATCATCCTGCGAGGAGGACAGCTTGGCCGATTGCCGATGCGAGACGGGCAGCTTCTTGCTCTTCGCTTCAAT]
[-] EMBL CNS08OR8 [ TTGTCCCTCATGCTCTTTTAGTCGTTCTCCCAATAATTGTTAGGCTGTCTCCCAGCAGGCTGAGATGCGCAGCACATCCGTGGGCATGCATCCGGCCGGTTTAGTCGGAACCGTTTTATCCTTCCCTTGTCTTGCTCTGTGAGAATGAGTTCGTTTTGGTGCGTTTGGTCGGTTTCCCT GCG TTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCTTGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAGCATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCGTCAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTGTG TTCCGCTCGATCCGTTCGAATGCCCCCCCCCCCCCCCGTCCGACTCCGTGTGCCCATC ]
[-] EMBL CNS08GII [ agGCACAGCCGTGGGCATGCATCCGGCCGGTTTAGTCGGAACCGTTTTATCCTT CCTTGTCTTGCTCTGTGAGAATGAGTTCGTTTTGGTGCGTTTGGTCGGTTT CCT GGC TTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCTTGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAGCATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCCTCAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTGTGCTTCCGCTCGATCCGTTCGAATGCGAGTCCTCGTGCTCGTCCGACTCCGTGTGCCCATCTTCCTGT GGGGAAAGCAAATCATCCTGCGAGGAGGACAGCTTGGCCGATTGCCGATGCGAGACGGGCAGCTTCTTG GGGTGGCTTCAAT]
consensusID : consensus_6994#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence
[TTTCGAGACCTTGGGGGGGGGGGGGGGGGTATGTACAATGTAGGACTATAACTTAATAGTATAGATATGCGTCGCCCTTTCCGTTTCCCCCACTACAATCCGGGCATTACGTAGGCAATGTTATCCAGCGTGTTCCTAAACAGCTCCCGCAGATGGTCCGAGTTCCGCTCCATGCCGGGTATTTGCAGTGTCAGACACATCAGTGGACCAAGCGAGCAGATTAAACTGTCCAACAGAACGGATAAGCTGCCGGAAACGGTAATTTGTCCCTCATGCTCTTTTAGTCGTTCTCCAATAATTGTTAGGCTGTCTCCCAGCAGGCTGAGATGCGCACCACATCCGTGGGCATGCATCCGGCCGGTTTAGTCGGAACCGTTTTATCCTTCCTTGTCTTGTCTCTGTGAGAATGGAGTTCGTTTTGGTGCGTTTGGTCGGTTTCCTGCGCTTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCTTGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAGCATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCCTCAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTTCGCTTCCGCTCGATCCGTTCGAATGCGAGTTCTCGTGCTCGTCCGACTCCGTGTGCCCATCTTCCTGGTGGGGAAAGCAAATCATCCTGC]
[+] EMBL CNS08OR9 [TTTCGAGACCTTGGGGGGGGGGGGGGGGGTATGTACAATGTAGGACTATAACTTAATAGTATAGATATGCGTCGCCCTTTCCGTTTCCCCCACTACAATCCGGGCATTACGTAGGCAATGTTATCCAGCGTGTTCCTAAACAGCTCCCGCAGATGGTCCGAGTTCCGCTCCATGCCGGGTATTTGCAGTGTCAGACACATCAGTGGACCAAGCGAGCAGATTAAACTGTCCAACAGAACGGATAAGCTGCCGGAAACGGTAATTTGTCCCTCATGCTCTTTTAGTCGTTCTCCAATAATTGTTAGGCTGTCTCCCAGCAGGCTGAGATGCGCACCACATCCGTGGGCATGCATCCGGCCGGTTTAGTCGGAACCGTTTTATCCTTCCTTGTCTTGTCTCTGTGAGAATGGAGTTCGTTTTGGTGCGTTTGGTCGGTTTCCTGCGCTTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCTTGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAGCATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCCTCAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTTCGCTTCCGCTCGATCCGTTCGAATGCGAGTTCTCGTGCTCGTCCGACTCCGTGTGCCCATCTTCCTGGTGGGGAAAGCAAATCATCCTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6994#0 GTCTAAAACAATTTGTTCGTGAACTTCGTATACAGGCCATTGTTTCGAAGGTCGACCTGG 60
consensus_6994#1 ------------------------------------------------------------
consensus_6994#0 CCCGACTCCGGACGACTCCGTCTCCAATCAACCCCGGACGACGCCTAACGACTCCGGACG 120
consensus_6994#1 ------------------------------------------------------------
consensus_6994#0 ACTCCGAATAATGCTGGGAGGACCTACCTTCCTAAATCGGTTCCGAAATTATCAGAGTCG 180
consensus_6994#1 ------------------------------------------------------------
consensus_6994#0 GATTGGAGTCGACTCAGGATTTTTGCCAACTTTACCCATCACTACTCCTTCGTAATCACT 240
consensus_6994#1 ----------------------------------------------------------TT 2
*
consensus_6994#0 TTCAGACCTTCGTAACTGTAATGATT-TATGTACAATGTAGGACTATAACTTAATAGTAT 299
consensus_6994#1 TCGAGACCTTGGGGGGGGGGGGGGGGGTATGTACAATGTAGGACTATAACTTAATAGTAT 62
* ******* * * * *********************************
consensus_6994#0 AGATATGCGTCGCCCTTTCCGTTTCCCCCACTACAATCCGGGCATTACGTAGGCAATGTT 359
consensus_6994#1 AGATATGCGTCGCCCTTTCCGTTTCCCCCACTACAATCCGGGCATTACGTAGGCAATGTT 122
************************************************************
consensus_6994#0 ATCCAGCGTGTTCCTAAACAGCTCCCGCAGATGGTCCGAGTTCCGCTCCATGCCGGGTAT 419
consensus_6994#1 ATCCAGCGTGTTCCTAAACAGCTCCCGCAGATGGTCCGAGTTCCGCTCCATGCCGGGTAT 182
************************************************************
consensus_6994#0 TTGCAGTGTCAGACACATCAGTGGACCAAGCGAGCAGATTAAACTGTCCAACAGAACGGA 479
consensus_6994#1 TTGCAGTGTCAGACACATCAGTGGACCAAGCGAGCAGATTAAACTGTCCAACAGAACGGA 242
************************************************************
consensus_6994#0 TAAGCTGCCGGAAACGGTAATTTGTCCCTCATGCTCTTTTAGTCGTTCTCCAATAATTGT 539
consensus_6994#1 TAAGCTGCCGGAAACGGTAATTTGTCCCTCATGCTCTTTTAGTCGTTCTCCAATAATTGT 302
************************************************************
consensus_6994#0 TAGGCTGTCTCCCAGCAGGCTGAGATGCGCAGCACATCCGTGGGCATGCATCCGGCCGGT 599
consensus_6994#1 TAGGCTGTCTCCCAGCAGGCTGAGATGCGCACCACATCCGTGGGCATGCATCCGGCCGGT 362
******************************* ****************************
consensus_6994#0 TTAGTCGGAACCGTTTTATCCTTCCTTGTCTTG-CTCTGTGAGAATG-AGTTCGTTTTGG 657
consensus_6994#1 TTAGTCGGAACCGTTTTATCCTTCCTTGTCTTGTCTCTGTGAGAATGGAGTTCGTTTTGG 422
********************************* ************* ************
consensus_6994#0 TGCGTTTGGTCGGTTTCCTGCG-TTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCT 716
consensus_6994#1 TGCGTTTGGTCGGTTTCCTGCGCTTCGCTGCCGAGCTTCTGCCACCTGCTTTAGGGCTCT 482
********************** *************************************
consensus_6994#0 TGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAG 776
consensus_6994#1 TGTTGCTTTGGCGTCTACTTTTATCGGCCCTTTTCTTCGTCGGCCTTTTCTTCGAGCCAG 542
************************************************************
consensus_6994#0 CATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCCT 836
consensus_6994#1 CATCAATCACCAGCTCACCCTCGCTCCGATCACCATCGTTCAGCCCAGTGTACACTTCCT 602
************************************************************
consensus_6994#0 CAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTGCGCTTCCGCTCGATCCGTTCGAAT 896
consensus_6994#1 CAATGTCCATTGCGTCCTCATCGCTGCTGTACGTTTCGCTTCCGCTCGATCCGTTCGAAT 662
*********************************** ************************
consensus_6994#0 GCGAGTCCTCGTGCTCGTCCGACTCCGTGTGCCCATCTTCCTG-TGGGGAAAGCAAATCA 955
consensus_6994#1 GCGAGTTCTCGTGCTCGTCCGACTCCGTGTGCCCATCTTCCTGGTGGGGAAAGCAAATCA 722
****** ************************************ ****************
consensus_6994#0 TCCTGCGAGGAGGACAGCTTGGCCGATTGCCGATGCGAGACGGGCAGCTTCTTGCTCTTC 1015
consensus_6994#1 TCCTGC------------------------------------------------------ 728
******
consensus_6994#0 GCTTCAAT 1023
consensus_6994#1 --------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||