These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6999#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1058 fasta sequence [AGATGGCGGCCGCACTGTTCAGTGCCGGTTTCGAGGTGCACGACGTGGTCATGAACGATCTGCTGCAGGGCCGCACAACGCTCGATCGCTACCGTGTTATCGTGTTTCCGGGTGGATTCAGTTACGCCGACACGCTCGGTTCGGCCAAGGGCTGGGCGGCCTGCATCCAGTACAACGGTACGATCGCACCACAGTTCGAGCACTTCCGGCAACGCGAGGACACGTTCTCGCTCGGTGTCTGCAACGGCTGCCAGCTGATGGGACTGATCGGGTGGGTCGAGACGGGCCTGACACCGACGGCCGCCACGCCGACCGTGCCGGAAGTAGTGCTGGTCGGCAATCGGTCGGAGAAGTTCGAAAGCCGCTGGGTGACGCTGCGTGTTCCGGCGAGCCGGTCGATCATGCTACGCCGCCTGGCGGGCAGTGTGCTCGGCTGCTGGGTGGCCCATGGTGAGGGTCGGTTCTCGTTCCGTACCGATGCGAGCCGCGACCGGCTGGTGATGAGCCAGTGCGTTACGATGCAGTACGTGGACGATGCGAGCAATCCGACCGAGCAGTACCCGATGAATCCGAACGGCAGCCCGATGGGCATTGCGGGCGTTTGCTCGCCGGACGGGCGCCACCTGGCCATCATGCCCCACCCGGAGCGTTGCGTGCAGATGTGGCAGTGGCCGTACGTAACCGCCGATTTCCCGTGCAAAAACGCCGCCCCCT-GGATGTCGATGTTCCAGGAGGCGTACCTGTGGTGCAGTGGGCAGCAACAGTAAAGCAATACCCTTCCACACACACACACACACACACACACACACCCGAAAAGAACATTCCCCAGCGGGCACGGAGCGCAAGGTGTGGTGGCAGCACTAATCCTTTGCTTTCACCTTTCGATCCGATCATCGCTGTTGCCTTTTGCAAATTTAATTGAAGTGCTTTACTGATAAAGCTAAAAGCTTCCCCGTTTCCGCCGTTTTATTCCCCGCGCGCCCACCACTGGCCTTTGGGATGGCAGTGTCTTATAGTTTAAGTATCCAGCTCCGCATGTAACGGTAGCAGCTCGTAGC] [+] EMBL BX610362 [AGATGGCGGCCGCACTGTTCAGTGCCGGTTTCGAGGTGCACGACGTGGTCATGAACGATCTGCTGCAGGGCCGCACAACGCTCGATCGCTACCGTGTTATCGTGTTTCCGGGTGGATTCAGTTACGCCGACACGCTCGGTTCGGCCAAGGGCTGGGCGGCCTGCATCCAGTACAACGGTACGATCGCACCACAGTTCGAGCACTTCCGGCAACGCGAGGACACGTTCTCGCTCGGTGTCTGCAACGGCTGCCAGCTGATGGGACTGATCGGGTGGGTCGAGACGGGCCTGACACCGACGGCCGCCACGCCGACCGTGCCGGAAGTAGTGCTGGTCGGCAATCGGTCGGAGAAGTTCGAAAGCCGCTGGGTGACGCTGCGTGTTCCGGCGAGCCGGTCGATCATGCTACGCCGCCTGGCGGGCAGTGTGCTCGGCTGCTGGGTGGCCCATGGTGAGGGTCGGTTCTCGTTCCGTACCGATGCGAGCCGCGACCGGCTGGTGATGAGCCAGTGCGTTACGATGCAGTACGTGGACGATGCGAGCAATCCGACCGAGCA ] [+] EMBL AGA281537 [ TGCCGGTTTCGAGGTGCACGACGTGGTCATGAACGATCTGCTGCAGGGCCGCACAACGCTCGATCGCTACCGTGGTATCGTGTTTCCGGGTGGATTCAGTTACGCCGACACGCTCGGTTCGGCCAAGGGCTGGGCGGCCTGCATCCAGTACAACGGTACGATCGCACCACAGTTCGAGCACTTCCGGCAACGCGAGGACACGTTCTCGCTCGGTGTCTGCAACGGCTGCCAGCTGATGGGACTGATCGGGTGGGTCGAGACGGGCCTGACACCGACGGCCGCCACGCCGACCGTGCCGGAAGTAGTGCTGGTCGGCAATCGGTCGGAGAAGTTCGAAAGCCGCTGGGTGACGCTGCGTGTTCCGGCGAGCCGGTCGATCATGCTACGCCGCCTGGCGGNCAGTGTGCTCGGCTGCTGGGTGGCCCATGGTGAGGGTCGGTTCTCGTTCCGTACCGATGCGAGCCGCGACCGGCTGGTGATGAGCCAGTGCGTTACGATGCAGTACGTGGACGATGCGAGCAATCCGACCGAGCAGTACCCGATGAATCCGAACGGCAGCCCGATGG ] [+] EMBL BX613733 [ TCTCGCTCGGTGTCTGCAACGGCTGCCAGCTGATGGGACTGATCGGGTGGGTCGAGACGGGCCTGACACCGACGGCCGCCACGCCGACCGTGCCGGAAGTAGTGCTGGTCGGCAATCGGTCGGAGAAGTTCGAAAGCCGCTGGGTGACGCTGCGTGTTCCGGCGAGCCGGTCGATCATGCTACGCCGCCTGGCGGGCAGTGTGCTCGGCTGCTGGGTGGCCCATGGTGAGGGTCGGTTCTCGTTCCGTACCGATGCGAGCCGCGACCGGCTGGTGATGAGCCAGTGCGTTACGATGCAGTACGTGGACGATGCGAGCAATCCGACCGAGCAGTACCCGATGAATCCGAACGGCAGCCCGATGGGCATTGCGGGCGTTTGCTCGCCGGACGGGCGCCACCTGGCCATCATGCCCCACCCGGAGCGTTGCGTGCAGATGTGGCAGTGGCCGTACGTAACCGCCGATTTCCCGTGCAAAAACGCCGCCCCCT GGATGTCGATGT ] [+] EMBL BM610678 [ ccgCCATGGTGAGGGTCGGTTCTCGTTCCGTACCGATGCGAGCCGCGACCGGCTGGTGATGAGCCAGTGCGTTACGATGCAGTACGTGGACGATGCGAGCAATCCGACCGAGCAGTACCCGATGAATCCGAACGGCAGCCCGATGGGCATTGCGGGCGTTTGCTCGCCGGACGGGCGCCACCTGGCCATCATGCCCCACCCGGAGCGTTGCGTGCAGATGTGGCAGTGGCCGTACGTAACCGCCGATTTCCCGTGCAAAAACGCCGCCCCCTGGGATGTCGATGTTCCAGGAGGCGTACCTGTGGTGCAGTGGGCAGCAACAGTAAAGCAATACCCTTCCACACACACACACACACACACACACACACCCGAAAAGAACATTCCCCAGCGGGCACGGAGCGCAAGGTGTGGTGGCAGCACTAATCCTTTGCTTTCACCTTTCGATCCGATCATCGCTGTTGCCTTTTGCAAATTTAATTGAAGTGCTTTACTGATAAAGCTAAAAGCTTCCCCGTTTCCGCCGTTTTATTCCCCGCGCGCCCACCACTGGCCTTTGGGATGGCAGTGTCTTATAGTTTAAGTATCCAGCTCCGCATGTAACGGTAGCAGCTCGTAGC] consensusID : consensus_6999#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence [AGCAGACCGGNGATATGAGATTGTGGCTGACTGTTCAGTGTCTGGTTTTGAGGTGCACGACGTGGTCATGAACGATCTGCTGCAGGGGCCGCACAACGCTCGATCGCTACCGTGGTATCGTGTTTCCTGGGTGGATTCAGTTACGCCGACACTGCTCGTGTATCTGTGCCAAGGTGCTGGTGCTGTGCCTGCATCCAGTACAACTGGTACGATCGCACCACAGTTCGAGCACTTCCGGCAACGGCGAGGACACGTTCTCGCTCGGTGTCTGCAAACGGCTGCCAGCTGATGGGACTGATCAGGGTTGGGTCTGAGACGGGCCTTGACACCGACGGNCGCACGCCGACGTGCCGGAAGTATGTGCTGGTCGGCAAATCGGTNCGGAGCAAGTTCGGACAAGCCGCTGGGTTGACGCTGCGTTGTTCCGGCGAGCCTGGTCGNATCATTGCTACCGCCGCCTGGCTGGGCGCAGGTGTGCTCGTGGCTTGCTGCGGTTGGCCCATGGTGAGGGTCAGGTTCTCGTTCCGTACCGATGCGACGCCGCGCACGGGCTGGCTGATGAGCCCAGCTGCCGTAACGATGCAGTACGTTGGACGATGCGAGCAATACCGACCGAGCAGTACCGATGAATCGAACGGCAAGCCGAATGGGCCATTGCGGCCGTTTGNTCGCCGGACGGGCAGCCANCTGGCATCAT] [+] EMBL AL693081 [AGCAGACCGGNGATATGAGATTGTGGCTGACTGTTCAGTGTCTGGTTTTGAGGTGCACGACGTGGTCATGAACGATCTGCTGCAGGGGCCGCACAACGCTCGATCGCTACCGTGGTATCGTGTTTCCTGGGTGGATTCAGTTACGCCGACACTGCTCGTGTATCTGTGCCAAGGTGCTGGTGCTGTGCCTGCATCCAGTACAACTGGTACGATCGCACCACAGTTCGAGCACTTCCGGCAACGGCGAGGACACGTTCTCGCTCGGTGTCTGCAAACGGCTGCCAGCTGATGGGACTGATCAGGGTTGGGTCTGAGACGGGCCTTGACACCGACGGNCGCACGCCGACGTGCCGGAAGTATGTGCTGGTCGGCAAATCGGTNCGGAGCAAGTTCGGACAAGCCGCTGGGTTGACGCTGCGTTGTTCCGGCGAGCCTGGTCGNATCATTGCTACCGCCGCCTGGCTGGGCGCAGGTGTGCTCGTGGCTTGCTGCGGTTGGCCCATGGTGAGGGTCAGGTTCTCGTTCCGTACCGATGCGACGCCGCGCACGGGCTGGCTGATGAGCCCAGCTGCCGTAACGATGCAGTACGTTGGACGATGCGAGCAATACCGACCGAGCAGTACCGATGAATCGAACGGCAAGCCGAATGGGCCATTGCGGCCGTTTGNTCGCCGGACGGGCAGCCANCTGGCATCAT] consensusID : consensus_6999#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence [CCGGCGGCCTGCATCCAGTACAACGGTACGATCGCACCACAGTTCGAGCACTTCCGGCAGCGCGAGGACACGTTCTCGCTCGGTGTCTGCAACGGCTGCCAGCTGATGGGACTGATCGGGTGGGTCGAGACGGGCCTGACACCGACGGCCGCCACGCCGACCGTGCCGGAAGTAGTGTTGGTCGGCAATCGGTCGGAGAAGTTCGAAAGCCGCTGGGTGACGCTGCGTGTTCCGGCGAGCCGGTCGATCATGCTACGCCGCCTGGCGGGCAGTGTGCTCGGCTGCTGGGTGGCCCATGGTGAGGGTCGGTTCTCGTTCCGTACCGATGCGAGCCGCGACCGGCTGCTGATGAGCCAGTGCGTTACGATGCAGTACGTGGACGATGCGAGCAATCCGACCGAGCAGTACCCGATGAACCCGAACGGCAGCCCGCTGGGCATTGCGGGCGTTTGCTCGCCGGACGGGCGCCATCTGGCCATCATGCCCCACCCGGAGCGTTGCGTGCAGATGTGGCAGTGGCCGTACGTAACCGCCGATTTCCCGTGCAAAAACGCCGCCCCCTGGGATGTCGATGTTCCAGGAGGCGTACCCTGTGGTGCAGTGGGCAGCAACAGTAAAGCGATAACCTTTCATACACCTCAAAAGAACATTCCCCAGCGGGCACGGAAGC] [+] EMBL BM593014 [CCGGCGGCCTGCATCCAGTACAACGGTACGATCGCACCACAGTTCGAGCACTTCCGGCAGCGCGAGGACACGTTCTCGCTCGGTGTCTGCAACGGCTGCCAGCTGATGGGACTGATCGGGTGGGTCGAGACGGGCCTGACACCGACGGCCGCCACGCCGACCGTGCCGGAAGTAGTGTTGGTCGGCAATCGGTCGGAGAAGTTCGAAAGCCGCTGGGTGACGCTGCGTGTTCCGGCGAGCCGGTCGATCATGCTACGCCGCCTGGCGGGCAGTGTGCTCGGCTGCTGGGTGGCCCATGGTGAGGGTCGGTTCTCGTTCCGTACCGATGCGAGCCGCGACCGGCTGCTGATGAGCCAGTGCGTTACGATGCAGTACGTGGACGATGCGAGCAATCCGACCGAGCAGTACCCGATGAACCCGAACGGCAGCCCGCTGGGCATTGCGGGCGTTTGCTCGCCGGACGGGCGCCATCTGGCCATCATGCCCCACCCGGAGCGTTGCGTGCAGATGTGGCAGTGGCCGTACGTAACCGCCGATTTCCCGTGCAAAAACGCCGCCCCCTGGGATGTCGATGTTCCAGGAGGCGTACCCTGTGGTGCAGTGGGCAGCAACAGTAAAGCGATAACCTTTCATACACCTCAAAAGAACATTCCCCAGCGGGCACGGAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6999#0 ------------------------AGATGGCGGCCGCACTGTTCAGTGCCGGTTTCGAGG 36 consensus_6999#2 ------------------------------------------------------------ consensus_6999#1 AGCAGACCGGNGATATGAGATTGTGGCTGACTGTTCAGTGTCTGGTTTTGAGGTGCACGA 60 consensus_6999#0 TGCACGACGTGGTCATGAACGATCTGCTGCAGGGCCGCACAACGCTCGATCGCTACCGTG 96 consensus_6999#2 ------------------------------------------------------------ consensus_6999#1 CGTGGTCATGAACGATCTGCTGCAGGGGCCGCACAACGCTCGATCGCTACCGTGGTATCG 120 consensus_6999#0 TTATCGTGTTTCCGGGTGGATTCAGTTACGCCGACACGCTCGGTTCGGCCAAGGGCTGGG 156 consensus_6999#2 --------------------------------------------------------CCGG 4 consensus_6999#1 TGTTTCCTGGGTGGATTCAGTTACGCCGACACTGCTCGTGTATCTGTGCCAAGGTGCTGG 180 ** consensus_6999#0 CG----GCCTGCATCCAGTACAAC-GGTACGATCGCACCACAGTTCGAGCACTTCCGGCA 211 consensus_6999#2 CG----GCCTGCATCCAGTACAAC-GGTACGATCGCACCACAGTTCGAGCACTTCCGGCA 59 consensus_6999#1 TGCTGTGCCTGCATCCAGTACAACTGGTACGATCGCACCACAGTTCGAGCACTTCCGGCA 240 * ****************** *********************************** consensus_6999#0 ACG-CGAGGACACGTTCTCGCTCGGTGTCTGCAA-CGGCTGCCAGCTGATGGGACTGATC 269 consensus_6999#2 GCG-CGAGGACACGTTCTCGCTCGGTGTCTGCAA-CGGCTGCCAGCTGATGGGACTGATC 117 consensus_6999#1 ACGGCGAGGACACGTTCTCGCTCGGTGTCTGCAAACGGCTGCCAGCTGATGGGACTGATC 300 ** ****************************** ************************* consensus_6999#0 GGG--TGGGTC-GAGACGGGCCT-GACACCGACGGCCGCCACGCCGACCGTGCCGGAAGT 325 consensus_6999#2 GGG--TGGGTC-GAGACGGGCCT-GACACCGACGGCCGCCACGCCGACCGTGCCGGAAGT 173 consensus_6999#1 AGGGTTGGGTCTGAGACGGGCCTTGACACCGACGGNCGC-ACGCCGAC-GTGCCGGAAGT 358 ** ****** *********** *********** *** ******** *********** consensus_6999#0 A-GTGCTGGTCGGCAA-TCGGTC-GGAG-AAGTTCGAA--AGCCGCTGGGT-GACGCTGC 378 consensus_6999#2 A-GTGTTGGTCGGCAA-TCGGTC-GGAG-AAGTTCGAA--AGCCGCTGGGT-GACGCTGC 226 consensus_6999#1 ATGTGCTGGTCGGCAAATCGGTNCGGAGCAAGTTCGGACAAGCCGCTGGGTTGACGCTGC 418 * *** ********** ***** **** ******* * *********** ******** consensus_6999#0 GT-GTTCCGGCGAGCC-GGTCGA-TCAT-GCTAC-GCCGCCTGGC-GGGCA---GTGTGC 429 consensus_6999#2 GT-GTTCCGGCGAGCC-GGTCGA-TCAT-GCTAC-GCCGCCTGGC-GGGCA---GTGTGC 277 consensus_6999#1 GTTGTTCCGGCGAGCCTGGTCGNATCATTGCTACCGCCGCCTGGCTGGGCGCAGGTGTGC 478 ** ************* ***** **** ***** ********** **** ****** consensus_6999#0 TCGG---CTGCTGGG--TGGCCCATGGTGAGGGTC-GGTTCTCGTTCCGTACCGATGCGA 483 consensus_6999#2 TCGG---CTGCTGGG--TGGCCCATGGTGAGGGTC-GGTTCTCGTTCCGTACCGATGCGA 331 consensus_6999#1 TCGTGGCTTGCTGCGGTTGGCCCATGGTGAGGGTCAGGTTCTCGTTCCGTACCGATGCGA 538 *** ***** * ****************** ************************ consensus_6999#0 -GCCGCG-ACCGGCTG-GTGATGAGCCAG--TGC-GTTACGATGCAGTACGT-GGACGAT 536 consensus_6999#2 -GCCGCG-ACCGGCTG-CTGATGAGCCAG--TGC-GTTACGATGCAGTACGT-GGACGAT 384 consensus_6999#1 CGCCGCGCACGGGCTGGCTGATGAGCCCAGCTGCCGTAACGATGCAGTACGTTGGACGAT 598 ****** ** ***** ********* *** ** ************** ******* consensus_6999#0 GCGAGCAAT-CCGACCGAGCAGTACCCGATGAATCCGAACGGCAGCCCG--ATGGGCATT 593 consensus_6999#2 GCGAGCAAT-CCGACCGAGCAGTACCCGATGAACCCGAACGGCAGCCCG--CTGGGCATT 441 consensus_6999#1 GCGAGCAATACCGACCGAGCAGTACC-GATGAATC-GAACGGCAAGCCGAATGGGCCATT 656 ********* **************** ****** * ******** *** ** **** consensus_6999#0 GCGGGCGTTTGCTCGCCGGACGGGC-GCCACCTGGCCATCATGCCCCACCCGGAGCGTTG 652 consensus_6999#2 GCGGGCGTTTGCTCGCCGGACGGGC-GCCATCTGGCCATCATGCCCCACCCGGAGCGTTG 500 consensus_6999#1 GCGGCCGTTTGNTCGCCGGACGGGCAGCCANCTGGC-ATCAT------------------ 697 **** ****** ************* **** ***** ***** consensus_6999#0 CGTGCAGATGTGGCAGTGGCCGTACGTAACCGCCGATTTCCCGTGCAAAAACGCCGCCCC 712 consensus_6999#2 CGTGCAGATGTGGCAGTGGCCGTACGTAACCGCCGATTTCCCGTGCAAAAACGCCGCCCC 560 consensus_6999#1 ------------------------------------------------------------ consensus_6999#0 CTGG-ATGTCGATGTTCCAGGAGGCGTACC-TGTGGTGCAGTGGGCAGCAACAGTAAAGC 770 consensus_6999#2 CTGGGATGTCGATGTTCCAGGAGGCGTACCCTGTGGTGCAGTGGGCAGCAACAGTAAAGC 620 consensus_6999#1 ------------------------------------------------------------ consensus_6999#0 AATACCCTTCCACACACACACACACACACACACACACACCCGAAAAGAACATTCCCCAGC 830 consensus_6999#2 GATAACCTTTCATACAC----------------------CTCAAAAGAACATTCCCCAGC 658 consensus_6999#1 ------------------------------------------------------------ consensus_6999#0 GGGCACGGAGCGCAAGGTGTGGTGGCAGCACTAATCCTTTGCTTTCACCTTTCGATCCGA 890 consensus_6999#2 GGGCACGGAA-GC----------------------------------------------- 670 consensus_6999#1 ------------------------------------------------------------ consensus_6999#0 TCATCGCTGTTGCCTTTTGCAAATTTAATTGAAGTGCTTTACTGATAAAGCTAAAAGCTT 950 consensus_6999#2 ------------------------------------------------------------ consensus_6999#1 ------------------------------------------------------------ consensus_6999#0 CCCCGTTTCCGCCGTTTTATTCCCCGCGCGCCCACCACTGGCCTTTGGGATGGCAGTGTC 1010 consensus_6999#2 ------------------------------------------------------------ consensus_6999#1 ------------------------------------------------------------ consensus_6999#0 TTATAGTTTAAGTATCCAGCTCCGCATGTAACGGTAGCAGCTCGTAGC 1058 consensus_6999#2 ------------------------------------------------ consensus_6999#1 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||