These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7006#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1351 fasta sequence [GACCCACGCGTCCGGAAGAAATGAAAAGGAAACGCATGTGTATCGACCACTAACGAAAATCATTGGCATTTCTCCTTGTTAGATTAAGTTTGTTTTAAAGCGCTTTTACAAAGAGAGAGAGAGAGAGAGAGAGAGAAAAAGAGAGGGAGACAGTGCGGAAAGGAGAATTCATTTAGCCAGGGTAACGAGAGCAAAATCGTGCACTGTTCATTTAGTTTTTTTTGTTTTCATCTTTTCATTCAAGAAACTTAGTCATGTGTTCCTTTTGTGAAGAAAAGCAAGCTTAAACGGCGTTCGTTGATCGTTGATCGTGATGGATATATGGATGCTCAGAAGGAGACGAGGAGAAGGAAAAACACAAACAAGCAGAGGCATTGTGCGTAGAATTCAAAACAATCCTCTCACTCGGTCTCTTTTTCCCCACTTTCTGCTGCAACATTACATGCAATCGTCGGGAGAGGCAAGACAAAGGAGAGATTAGGGCTTGCGAATAGCTTTTTGCTTTTGTCTACTTTTGCCTCCCGTTTTTTATTTGTATATTTTTTAAAAAGAAAAGCGCGCGCCATATTTTTGTTTAAAAGCGTAATTCTTATCCAGTGAAATTTTATACTTTTCTCTTCCTGTTTTTTTTTGCACATTTAATACTTTAAAATCATGATTTCATTCATATCCAGTGTTTGCTTTTTTTGGTTCTCCCGCTTTGGTTCATTGATTAAGAAGCGTTGTAGGGGAAAAAACAAGACACATATGTAGACCATCACCAATCGTGTTGTAGTGGACTTGGATAGCGCGTAGATGAAATGCGAGTTATTACTAATATCGGCTTTGTTGTGAAGAAATCGGCTAAAAATAAATGGAACTTCAACACTAGCAAAAAAGGCGCTTTGGAAAGATTCGGAAGTT-GTTAACACGTGTGTGCTGACTTCACTTCTACTTAATTATGTCGTGTGTCAATCCTAGCTGGTAGGATAAAGGGAACCAAACACACCACTCAACACACTCTCTTAGACATTGTGGAACACTTCCCAACGCTTAGCGCAACTATCAATAAAAGCTTAAGTTGCAGTAAAACAAAATTCTGACACAGCACG-AAAAAAAAAAAACAACCCAAAAGAGATGAAGGGATTACGTAGTAGTGTGGTTGGA-GGAAGGTTGGTGTAAACGATGATGATGGACTTGAAGAAGCGAGCGAGCAGATTGATCACCGTTTCCATGGTTACGTTT-T-GAAGGTTAAATGGTGCAGGCCATACTGCGTGTTTCGGTCATTAAAATACCAAATTCAAATCGGTTTTTATT-GTATGCCATTTATGGAACCCAGTCCCGACTCTTCCCTTTCGCCAAGCGTCAACAC] [+] EMBL BM638290 [GACCCACGCGTCCGGAAGAAATGAAAAGGAAACGCATGTGTATCGACCACTAACGAAAATCATTGGCATTTCTCCTTGTTAGATTAAGTTTGTTTTAAAGCGCTTTTACAAAGAGAGAGAGAGAGAGAGAGAGAGAAAAAGAGAGGGAGACAGTGCGGAAAGGAGAATTCATTTAGCCAGGGTAACGAGAGCAAAATCGTGCACTGTTCATTTAGTTTTTTTTGTTTTCATCTTTTCATTCAAGAAACTTAGTCATGTGTTCCTTTTGTGAAGAAAAGCAAGCTTAAACGGCGTTCGTTGATCGTTGATCGTGATGGATATATGGATGCTCAGAAGGAGACGAGGAGAAGGAAAAACACAAACAAGCAGAGGCATTGTGCGTAGAATTCAAAACAATCCTCTCACTCGGTCTCTTTTTCCCCACTTTCTGCTGCAACATTACATGCAATCGTCGGGAGAGGCAAGACAAAGGAGAGATTAGGGCTTGCGAA ] [+] EMBL BM650311 [ ccgGGAAAAACACAAACAAGCAGAGGCATTGTGCGTAGAATTCAAAACAATCCTCTCACTCGGTCTCTTTTTCCCCACTTTCTGCTGCAACATTACATGCAATCGTCGGGAGAGGCAAGACAAAGGAGAGATTAGGGCTTGCGAATAGCTTTTTGCTTTTGTCTACTTTTGCCTCCCGTTTTTTATTTGTATATTTTTTAAAAAGAAAAGCGCGCGCCATATTTTTGTTTAAAAGCGTAATTCTTATCCAGTGAAATTTTATACTTTTCTCTTCCTGTTTTTTTTTGCACATTTAATACTTTAAAATCATGATTTCATTCATATCCAGTGTTTGCTTTTTTTGGTTCTCCCGCTTTGGTTCATTGATTAAGAAGCGTTGTAGGGGAAAAAACAAGACACATATGTAGACCATCACCAATCGTGTTGTAGTGGACTTGGATAGCGCGTAGATGAAATGCGAGTTATTACTAATATCGGCTTTGTTGTGAAGAAATCGGCTAAAAATAAATGGAACTTCAACACTAGCAAAAAAGGCGCTTTGGAAAGATTC ] [-] EMBL CNS09HQW [ TTTGTCTACTTTTGCCTCCCGTTTTTTATTTGTATATTTTTTAAAAAGAAAAGCGCGCGCCATATTTTTGTTTAAAAGCGTAATTCTTATCCAGTGAAATTTTATACTTTTCTCTTCCTGTTTTTTTTTGCACATTTAATACTTTAAAATCATGATTTCATTCATATCCAGTGTTTGCTTTTTTTGGTTCTCCCGCTTTGGTTCATTGATTAAGAAGCGTTGTAGGGGAAAAAACAAGACACATATGTAGACCATCACCAATCGTGTTGTAGTGGACTTGGATAGCGCGTAGATGAAATGCGAGTTATTACTAATATCGGCTTTGTTGTGAAGAAATCGGCTAAAAATAAATGGAACTTCAACACTAGCAAAAAAGGCGCTTTGGAAAGATTCGGAAGTT GTTAACACGTGTGTGCTGACTTCACTTCTACTTAATTATGTCGTGTGTCAATCCTAGCTGGTAGGATAAAGGGAACCAAACACACCACTCAACACACTCTCTTAGACATTGTGGAACACTTCCCAACGCTTAGCGCAACTATCAATAAAAGCTTAAGTTGCAGTAAAACAAAATTCTGACACAGCACGAAAAAAAAAAAAACAACCCAAAAGAGATGAAGGGATTACGTAGTAGTGTGGTTGGA GGAAGGTTGGTGTAAACGATGATGATGGACTTGA ] [+] EMBL BX624116 [ ACCAATCGTGTTGTAGTGGACTTGGATAGCGCGTAGATGAAATGCGAGTTATTACTAATATCGGCTTTGTTGTGAAGAAATCGGCTAAAAATAAATGGAACTTCAACACTAGCAAAAAAGGCGCTTTGGAAAGATTCGGAAGTTGGTTAACACGTGTGTGCTGACTTCACTTCTACTTAATTATGTCGTGTGTCAATCCTAGCTGGTAGGATAAAGGGAACCAAACACACCACTCAACACACTCTCTTAGACATTGTGGAACACTTCCCAACGCTTAGCGCAACTATCAATAAAAGCTTGAGTTGCAGTAAAACAAAATTCTGACACACCAC AAAAAAAAAACAACCCAAAAGAGATGAAGGGATTACGTAGTAGTGTGGTTGGA GGAAGGTTGGTGTAAACGACGATGATGGACTTGAAGAAGCGAGCGAGCAGATTGATCACCGTTTCCATGGTTACGTTT T GAAGGTTAAATGGTGCAGGCCATACTGCGTGTTTCGGTCATTAAAATACCAAATTCAAATCGGTTTTTATT GTATGCCATTTATGG ] [+] EMBL AL929890 [ cgaggtttATATCGGCTTTGTTGTGAAGACATCGGCTNAAAATAAATGGAACTTCAACACTAGCAAAAAAGGCGCTTTGGAAAGATTCGGAAGTTGGTTAACACGTGTGTGCTGACTTCACTTCTACTTAATTATGTCGTGTGTCAATCCTAGCTGGTAGGATAAAGGGAACCAAACACACCACTCAACACACTCTCTTAGACATTGTGGAACACTTCCCAACGCTTAGCGCAACTATCAATAAAAGCTTAAGTTGCAGTAAAACAAAATTCTGACACAGCACG AAAAAACAAAAACAACCCAAAAGAGATGAAGGGATTACGTAGTAGTGTGGTTGGANGGAAGGTTGGTGTAAACGATGATGATGGACTTGAAGAAGCGAGCGAGCAGATTGATCACCGTTTCCATGGTTACGTTTCTCGAAGGTTAAATGGTGCAGGCCATACTGCGTGTTTCGGTCATTAAAATACCAAATTCAAATCGCTTTTTATTCGTATGCCATTTATGGAACCCAGTCCCGACTCTTCCCTTTCGCCAAGCGTCAACAC] consensusID : consensus_7006#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence [GCAGAATCCCCCGAGGTTATTATACTTTTCTCTTCCTGTTTTTTTTTGCACATTTAATACTTTAAAATCATGATTTCATTCATATCCAGTGTTTGCTTTTTTTGGTTCTCCCGCTTGGTTCATTGATTAAGAAGCGTTGTAGGGGAAAAAACAAGACACATATGTAGACCATCACCAATCGTGTTGTAGTGGACTTGGATAGCGCGTAGATGAAATGCGAGTTATTACTAACTATCGGCTTTGTTGTGAACGAAATCGGCTAACNCANCTACACATGGCACTTCAACACTAGCCACACAACACAGGCGCTTCNGCGCAACACGACTTCGGAAGCTCGGTTAACACGTGCTGTGCTGACTATCACTTCTACCTTACCTCTATGTCGCTGCTGCTCAACTCCCTANCTGGTAGCGCACTCACACACGCGGAACCAAACCACACCACCTCACACCACACTCTCTTAGACATTGTGGAACACTTCCCAACGCTTAGCGCAACTATCAATAAACACAGCTCTCAACGNTTTGCCACNCAACAACCCAAANACATATCCTGGANCCANCCAAGGCCAACCGACACACACCCCACACACAACCNAAAACCCCCCCAAACACNCACGCNACCGCACCTGCCANCNCNCGCGCAACTTCACCCGCATACGCATACACCNTGCCTGNGCCCCAGCGCCACNCCNGCGACACACCACGNCCACACACACACCCCAGCNCGCACCACCCCCCCAACAACCNCACCACACACNCCCCC] [+] EMBL AL929965 [GCAGAATCCCCCGAGGTTATTATACTTTTCTCTTCCTGTTTTTTTTTGCACATTTAATACTTTAAAATCATGATTTCATTCATATCCAGTGTTTGCTTTTTTTGGTTCTCCCGCTTGGTTCATTGATTAAGAAGCGTTGTAGGGGAAAAAACAAGACACATATGTAGACCATCACCAATCGTGTTGTAGTGGACTTGGATAGCGCGTAGATGAAATGCGAGTTATTACTAACTATCGGCTTTGTTGTGAACGAAATCGGCTAACNCANCTACACATGGCACTTCAACACTAGCCACACAACACAGGCGCTTCNGCGCAACACGACTTCGGAAGCTCGGTTAACACGTGCTGTGCTGACTATCACTTCTACCTTACCTCTATGTCGCTGCTGCTCAACTCCCTANCTGGTAGCGCACTCACACACGCGGAACCAAACCACACCACCTCACACCACACTCTCTTAGACATTGTGGAACACTTCCCAACGCTTAGCGCAACTATCAATAAACACAGCTCTCAACGNTTTGCCACNCAACAACCCAAANACATATCCTGGANCCANCCAAGGCCAACCGACACACACCCCACACACAACCNAAAACCCCCCCAAACACNCACGCNACCGCACCTGCCANCNCNCGCGCAACTTCACCCGCATACGCATACACCNTGCCTGNGCCCCAGCGCCACNCCNGCGACACACCACGNCCACACACACACCCCAGCNCGCACCACCCCCCCAACAACCNCACCACACACNCCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7006#0 GACCCACGCGTCCGGAAGAAATGAAAAGGAAACGCATGTGTATCGACCACTAACGAAAAT 60 consensus_7006#1 ------------------------------------------------------------ consensus_7006#0 CATTGGCATTTCTCCTTGTTAGATTAAGTTTGTTTTAAAGCGCTTTTACAAAGAGAGAGA 120 consensus_7006#1 ------------------------------------------------------------ consensus_7006#0 GAGAGAGAGAGAGAGAAAAAGAGAGGGAGACAGTGCGGAAAGGAGAATTCATTTAGCCAG 180 consensus_7006#1 ------------------------------------------------------------ consensus_7006#0 GGTAACGAGAGCAAAATCGTGCACTGTTCATTTAGTTTTTTTTGTTTTCATCTTTTCATT 240 consensus_7006#1 ------------------------------------------------------------ consensus_7006#0 CAAGAAACTTAGTCATGTGTTCCTTTTGTGAAGAAAAGCAAGCTTAAACGGCGTTCGTTG 300 consensus_7006#1 ------------------------------------------------------------ consensus_7006#0 ATCGTTGATCGTGATGGATATATGGATGCTCAGAAGGAGACGAGGAGAAGGAAAAACACA 360 consensus_7006#1 ------------------------------------------------------------ consensus_7006#0 AACAAGCAGAGGCATTGTGCGTAGAATTCAAAACAATCCTCTCACTCGGTCTCTTTTTCC 420 consensus_7006#1 ------------------------------------------------------------ consensus_7006#0 CCACTTTCTGCTGCAACATTACATGCAATCGTCGGGAGAGGCAAGACAAAGGAGAGATTA 480 consensus_7006#1 ------------------------------------------------------------ consensus_7006#0 GGGCTTGCGAATAGCTTTTTGCTTTTGTCTACTTTTGCCTCCCGTTTTTTATTTGTATAT 540 consensus_7006#1 ------------------------------------------------------------ consensus_7006#0 TTTTTAAAAAGAAAAGCGCGCGCCATATTTTTGTTTAAAAGCGTAATTCTTATCCAGTGA 600 consensus_7006#1 ----------------------------------------------GCAGAATCCCCCGA 14 **** ** consensus_7006#0 AATT-TTATACTTTTCTCTTCCTGTTTTTTTTTGCACATTTAATACTTTAAAATCATGAT 659 consensus_7006#1 GGTTATTATACTTTTCTCTTCCTGTTTTTTTTTGCACATTTAATACTTTAAAATCATGAT 74 ** ******************************************************* consensus_7006#0 TTCATTCATATCCAGTGTTTGCTTTTTTTGGTTCTCCCGCTTTGGTTCATTGATTAAGAA 719 consensus_7006#1 TTCATTCATATCCAGTGTTTGCTTTTTTTGGTTCTCCCGCTT-GGTTCATTGATTAAGAA 133 ****************************************** ***************** consensus_7006#0 GCGTTGTAGGGGAAAAAACAAGACACATATGTAGACCATCACCAATCGTGTTGTAGTGGA 779 consensus_7006#1 GCGTTGTAGGGGAAAAAACAAGACACATATGTAGACCATCACCAATCGTGTTGTAGTGGA 193 ************************************************************ consensus_7006#0 CTTGGATAGCGCGTAGATGAAATGCGAGTTATTACTAA-TATCGGCTTTGTTGTGAA-GA 837 consensus_7006#1 CTTGGATAGCGCGTAGATGAAATGCGAGTTATTACTAACTATCGGCTTTGTTGTGAACGA 253 ************************************** ****************** ** consensus_7006#0 AATCGGCTAAAA-----ATAAATGGAACTTCAACACTAGC-----AAAAAAGGCGCTTTG 887 consensus_7006#1 AATCGGCTAACNCANCTACACATGGCACTTCAACACTAGCCACACAACACAGGCGCTTCN 313 ********** * * **** ************** ** * ******** consensus_7006#0 GAAAGA------TTCGGAAGTT--GTTAACACGTG-TGTGCTGACT-TCACTTCTACTTA 937 consensus_7006#1 GCGCAACACGACTTCGGAAGCTCGGTTAACACGTGCTGTGCTGACTATCACTTCTACCTT 373 * * ******** * *********** ********** ********** * consensus_7006#0 AT---TATGTCG-TGTG--TCAAT--CCTAGCTGGTAGG--------ATAAAGGGAACCA 981 consensus_7006#1 ACCTCTATGTCGCTGCTGCTCAACTCCCTANCTGGTAGCGCACTCACACACGCGGAACCA 433 * ******* ** **** **** ******* * * ******* consensus_7006#0 AAC-ACACCACT---CAACACACTCTCTTAGACATTGTGGAACACTTCCCAACGCTTAGC 1037 consensus_7006#1 AACCACACCACCTCACACCACACTCTCTTAGACATTGTGGAACACTTCCCAACGCTTAGC 493 *** ******* ** ****************************************** consensus_7006#0 GCAACTATCAATAAAAGCTTAAGTTGCAGTAAAACAAAATTCTGACACAGCACGAAAAAA 1097 consensus_7006#1 GCAACTATCAATAAACAC--AGCTCTCAACGNTTTGCCACNCA---ACAACCCAAANACA 548 *************** * * * ** * * *** * * ** * * consensus_7006#0 AAAAAACAACCCAAAAGAGATGAAGGGATTACGTAGTAGTGTGGTTGGAGGAAGGTTGGT 1157 consensus_7006#1 TATCCTGGANCCANCCAAGGCCAACCGAC-ACACA-CCCCACACACAACCNAAAACCCCC 606 * * *** ** ** ** ** * ** consensus_7006#0 GTAAACGATGATGATGG-ACTTGAAGAAGCGAGCGAGCAGATTGATCACCGTTTCCATGG 1216 consensus_7006#1 CCAAACACNCACGCNACCGCACCTGCCANCNCNCGCGCAACTTCACCCGCATACGCAT-- 664 **** * * * * * ** *** ** * * * * *** consensus_7006#0 TTACGTTTTGAAGGTTAAATGGTGCAGGCCATACTGCGTGTTTCGGTCATTAAAATACCA 1276 consensus_7006#1 --ACACCNTGCCTGNGCCCCAGCGCCACNCCNGCGACACACCACGNCCACACACACACC- 721 ** ** * * ** * * * ** ** * * *** consensus_7006#0 AATTCAAATCGGTTTTTATTGTATGCCATTTATGGAACCCAGTCCCGACTCTTCCCTTTC 1336 consensus_7006#1 --------CCAGCNCGCACCAC---CCCCCCAACAACCNCACCACACACNCCCCC----- 765 * * * ** * * * ** * ** * ** consensus_7006#0 GCCAAGCGTCAACAC 1351 consensus_7006#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||