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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7006#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1351 fasta sequence
[GACCCACGCGTCCGGAAGAAATGAAAAGGAAACGCATGTGTATCGACCACTAACGAAAATCATTGGCATTTCTCCTTGTTAGATTAAGTTTGTTTTAAAGCGCTTTTACAAAGAGAGAGAGAGAGAGAGAGAGAGAAAAAGAGAGGGAGACAGTGCGGAAAGGAGAATTCATTTAGCCAGGGTAACGAGAGCAAAATCGTGCACTGTTCATTTAGTTTTTTTTGTTTTCATCTTTTCATTCAAGAAACTTAGTCATGTGTTCCTTTTGTGAAGAAAAGCAAGCTTAAACGGCGTTCGTTGATCGTTGATCGTGATGGATATATGGATGCTCAGAAGGAGACGAGGAGAAGGAAAAACACAAACAAGCAGAGGCATTGTGCGTAGAATTCAAAACAATCCTCTCACTCGGTCTCTTTTTCCCCACTTTCTGCTGCAACATTACATGCAATCGTCGGGAGAGGCAAGACAAAGGAGAGATTAGGGCTTGCGAATAGCTTTTTGCTTTTGTCTACTTTTGCCTCCCGTTTTTTATTTGTATATTTTTTAAAAAGAAAAGCGCGCGCCATATTTTTGTTTAAAAGCGTAATTCTTATCCAGTGAAATTTTATACTTTTCTCTTCCTGTTTTTTTTTGCACATTTAATACTTTAAAATCATGATTTCATTCATATCCAGTGTTTGCTTTTTTTGGTTCTCCCGCTTTGGTTCATTGATTAAGAAGCGTTGTAGGGGAAAAAACAAGACACATATGTAGACCATCACCAATCGTGTTGTAGTGGACTTGGATAGCGCGTAGATGAAATGCGAGTTATTACTAATATCGGCTTTGTTGTGAAGAAATCGGCTAAAAATAAATGGAACTTCAACACTAGCAAAAAAGGCGCTTTGGAAAGATTCGGAAGTT-GTTAACACGTGTGTGCTGACTTCACTTCTACTTAATTATGTCGTGTGTCAATCCTAGCTGGTAGGATAAAGGGAACCAAACACACCACTCAACACACTCTCTTAGACATTGTGGAACACTTCCCAACGCTTAGCGCAACTATCAATAAAAGCTTAAGTTGCAGTAAAACAAAATTCTGACACAGCACG-AAAAAAAAAAAACAACCCAAAAGAGATGAAGGGATTACGTAGTAGTGTGGTTGGA-GGAAGGTTGGTGTAAACGATGATGATGGACTTGAAGAAGCGAGCGAGCAGATTGATCACCGTTTCCATGGTTACGTTT-T-GAAGGTTAAATGGTGCAGGCCATACTGCGTGTTTCGGTCATTAAAATACCAAATTCAAATCGGTTTTTATT-GTATGCCATTTATGGAACCCAGTCCCGACTCTTCCCTTTCGCCAAGCGTCAACAC]
[+] EMBL BM638290 [GACCCACGCGTCCGGAAGAAATGAAAAGGAAACGCATGTGTATCGACCACTAACGAAAATCATTGGCATTTCTCCTTGTTAGATTAAGTTTGTTTTAAAGCGCTTTTACAAAGAGAGAGAGAGAGAGAGAGAGAGAAAAAGAGAGGGAGACAGTGCGGAAAGGAGAATTCATTTAGCCAGGGTAACGAGAGCAAAATCGTGCACTGTTCATTTAGTTTTTTTTGTTTTCATCTTTTCATTCAAGAAACTTAGTCATGTGTTCCTTTTGTGAAGAAAAGCAAGCTTAAACGGCGTTCGTTGATCGTTGATCGTGATGGATATATGGATGCTCAGAAGGAGACGAGGAGAAGGAAAAACACAAACAAGCAGAGGCATTGTGCGTAGAATTCAAAACAATCCTCTCACTCGGTCTCTTTTTCCCCACTTTCTGCTGCAACATTACATGCAATCGTCGGGAGAGGCAAGACAAAGGAGAGATTAGGGCTTGCGAA ]
[+] EMBL BM650311 [ ccgGGAAAAACACAAACAAGCAGAGGCATTGTGCGTAGAATTCAAAACAATCCTCTCACTCGGTCTCTTTTTCCCCACTTTCTGCTGCAACATTACATGCAATCGTCGGGAGAGGCAAGACAAAGGAGAGATTAGGGCTTGCGAATAGCTTTTTGCTTTTGTCTACTTTTGCCTCCCGTTTTTTATTTGTATATTTTTTAAAAAGAAAAGCGCGCGCCATATTTTTGTTTAAAAGCGTAATTCTTATCCAGTGAAATTTTATACTTTTCTCTTCCTGTTTTTTTTTGCACATTTAATACTTTAAAATCATGATTTCATTCATATCCAGTGTTTGCTTTTTTTGGTTCTCCCGCTTTGGTTCATTGATTAAGAAGCGTTGTAGGGGAAAAAACAAGACACATATGTAGACCATCACCAATCGTGTTGTAGTGGACTTGGATAGCGCGTAGATGAAATGCGAGTTATTACTAATATCGGCTTTGTTGTGAAGAAATCGGCTAAAAATAAATGGAACTTCAACACTAGCAAAAAAGGCGCTTTGGAAAGATTC ]
[-] EMBL CNS09HQW [ TTTGTCTACTTTTGCCTCCCGTTTTTTATTTGTATATTTTTTAAAAAGAAAAGCGCGCGCCATATTTTTGTTTAAAAGCGTAATTCTTATCCAGTGAAATTTTATACTTTTCTCTTCCTGTTTTTTTTTGCACATTTAATACTTTAAAATCATGATTTCATTCATATCCAGTGTTTGCTTTTTTTGGTTCTCCCGCTTTGGTTCATTGATTAAGAAGCGTTGTAGGGGAAAAAACAAGACACATATGTAGACCATCACCAATCGTGTTGTAGTGGACTTGGATAGCGCGTAGATGAAATGCGAGTTATTACTAATATCGGCTTTGTTGTGAAGAAATCGGCTAAAAATAAATGGAACTTCAACACTAGCAAAAAAGGCGCTTTGGAAAGATTCGGAAGTT GTTAACACGTGTGTGCTGACTTCACTTCTACTTAATTATGTCGTGTGTCAATCCTAGCTGGTAGGATAAAGGGAACCAAACACACCACTCAACACACTCTCTTAGACATTGTGGAACACTTCCCAACGCTTAGCGCAACTATCAATAAAAGCTTAAGTTGCAGTAAAACAAAATTCTGACACAGCACGAAAAAAAAAAAAACAACCCAAAAGAGATGAAGGGATTACGTAGTAGTGTGGTTGGA GGAAGGTTGGTGTAAACGATGATGATGGACTTGA ]
[+] EMBL BX624116 [ ACCAATCGTGTTGTAGTGGACTTGGATAGCGCGTAGATGAAATGCGAGTTATTACTAATATCGGCTTTGTTGTGAAGAAATCGGCTAAAAATAAATGGAACTTCAACACTAGCAAAAAAGGCGCTTTGGAAAGATTCGGAAGTTGGTTAACACGTGTGTGCTGACTTCACTTCTACTTAATTATGTCGTGTGTCAATCCTAGCTGGTAGGATAAAGGGAACCAAACACACCACTCAACACACTCTCTTAGACATTGTGGAACACTTCCCAACGCTTAGCGCAACTATCAATAAAAGCTTGAGTTGCAGTAAAACAAAATTCTGACACACCAC AAAAAAAAAACAACCCAAAAGAGATGAAGGGATTACGTAGTAGTGTGGTTGGA GGAAGGTTGGTGTAAACGACGATGATGGACTTGAAGAAGCGAGCGAGCAGATTGATCACCGTTTCCATGGTTACGTTT T GAAGGTTAAATGGTGCAGGCCATACTGCGTGTTTCGGTCATTAAAATACCAAATTCAAATCGGTTTTTATT GTATGCCATTTATGG ]
[+] EMBL AL929890 [ cgaggtttATATCGGCTTTGTTGTGAAGACATCGGCTNAAAATAAATGGAACTTCAACACTAGCAAAAAAGGCGCTTTGGAAAGATTCGGAAGTTGGTTAACACGTGTGTGCTGACTTCACTTCTACTTAATTATGTCGTGTGTCAATCCTAGCTGGTAGGATAAAGGGAACCAAACACACCACTCAACACACTCTCTTAGACATTGTGGAACACTTCCCAACGCTTAGCGCAACTATCAATAAAAGCTTAAGTTGCAGTAAAACAAAATTCTGACACAGCACG AAAAAACAAAAACAACCCAAAAGAGATGAAGGGATTACGTAGTAGTGTGGTTGGANGGAAGGTTGGTGTAAACGATGATGATGGACTTGAAGAAGCGAGCGAGCAGATTGATCACCGTTTCCATGGTTACGTTTCTCGAAGGTTAAATGGTGCAGGCCATACTGCGTGTTTCGGTCATTAAAATACCAAATTCAAATCGCTTTTTATTCGTATGCCATTTATGGAACCCAGTCCCGACTCTTCCCTTTCGCCAAGCGTCAACAC]
consensusID : consensus_7006#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence
[GCAGAATCCCCCGAGGTTATTATACTTTTCTCTTCCTGTTTTTTTTTGCACATTTAATACTTTAAAATCATGATTTCATTCATATCCAGTGTTTGCTTTTTTTGGTTCTCCCGCTTGGTTCATTGATTAAGAAGCGTTGTAGGGGAAAAAACAAGACACATATGTAGACCATCACCAATCGTGTTGTAGTGGACTTGGATAGCGCGTAGATGAAATGCGAGTTATTACTAACTATCGGCTTTGTTGTGAACGAAATCGGCTAACNCANCTACACATGGCACTTCAACACTAGCCACACAACACAGGCGCTTCNGCGCAACACGACTTCGGAAGCTCGGTTAACACGTGCTGTGCTGACTATCACTTCTACCTTACCTCTATGTCGCTGCTGCTCAACTCCCTANCTGGTAGCGCACTCACACACGCGGAACCAAACCACACCACCTCACACCACACTCTCTTAGACATTGTGGAACACTTCCCAACGCTTAGCGCAACTATCAATAAACACAGCTCTCAACGNTTTGCCACNCAACAACCCAAANACATATCCTGGANCCANCCAAGGCCAACCGACACACACCCCACACACAACCNAAAACCCCCCCAAACACNCACGCNACCGCACCTGCCANCNCNCGCGCAACTTCACCCGCATACGCATACACCNTGCCTGNGCCCCAGCGCCACNCCNGCGACACACCACGNCCACACACACACCCCAGCNCGCACCACCCCCCCAACAACCNCACCACACACNCCCCC]
[+] EMBL AL929965 [GCAGAATCCCCCGAGGTTATTATACTTTTCTCTTCCTGTTTTTTTTTGCACATTTAATACTTTAAAATCATGATTTCATTCATATCCAGTGTTTGCTTTTTTTGGTTCTCCCGCTTGGTTCATTGATTAAGAAGCGTTGTAGGGGAAAAAACAAGACACATATGTAGACCATCACCAATCGTGTTGTAGTGGACTTGGATAGCGCGTAGATGAAATGCGAGTTATTACTAACTATCGGCTTTGTTGTGAACGAAATCGGCTAACNCANCTACACATGGCACTTCAACACTAGCCACACAACACAGGCGCTTCNGCGCAACACGACTTCGGAAGCTCGGTTAACACGTGCTGTGCTGACTATCACTTCTACCTTACCTCTATGTCGCTGCTGCTCAACTCCCTANCTGGTAGCGCACTCACACACGCGGAACCAAACCACACCACCTCACACCACACTCTCTTAGACATTGTGGAACACTTCCCAACGCTTAGCGCAACTATCAATAAACACAGCTCTCAACGNTTTGCCACNCAACAACCCAAANACATATCCTGGANCCANCCAAGGCCAACCGACACACACCCCACACACAACCNAAAACCCCCCCAAACACNCACGCNACCGCACCTGCCANCNCNCGCGCAACTTCACCCGCATACGCATACACCNTGCCTGNGCCCCAGCGCCACNCCNGCGACACACCACGNCCACACACACACCCCAGCNCGCACCACCCCCCCAACAACCNCACCACACACNCCCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7006#0 GACCCACGCGTCCGGAAGAAATGAAAAGGAAACGCATGTGTATCGACCACTAACGAAAAT 60
consensus_7006#1 ------------------------------------------------------------
consensus_7006#0 CATTGGCATTTCTCCTTGTTAGATTAAGTTTGTTTTAAAGCGCTTTTACAAAGAGAGAGA 120
consensus_7006#1 ------------------------------------------------------------
consensus_7006#0 GAGAGAGAGAGAGAGAAAAAGAGAGGGAGACAGTGCGGAAAGGAGAATTCATTTAGCCAG 180
consensus_7006#1 ------------------------------------------------------------
consensus_7006#0 GGTAACGAGAGCAAAATCGTGCACTGTTCATTTAGTTTTTTTTGTTTTCATCTTTTCATT 240
consensus_7006#1 ------------------------------------------------------------
consensus_7006#0 CAAGAAACTTAGTCATGTGTTCCTTTTGTGAAGAAAAGCAAGCTTAAACGGCGTTCGTTG 300
consensus_7006#1 ------------------------------------------------------------
consensus_7006#0 ATCGTTGATCGTGATGGATATATGGATGCTCAGAAGGAGACGAGGAGAAGGAAAAACACA 360
consensus_7006#1 ------------------------------------------------------------
consensus_7006#0 AACAAGCAGAGGCATTGTGCGTAGAATTCAAAACAATCCTCTCACTCGGTCTCTTTTTCC 420
consensus_7006#1 ------------------------------------------------------------
consensus_7006#0 CCACTTTCTGCTGCAACATTACATGCAATCGTCGGGAGAGGCAAGACAAAGGAGAGATTA 480
consensus_7006#1 ------------------------------------------------------------
consensus_7006#0 GGGCTTGCGAATAGCTTTTTGCTTTTGTCTACTTTTGCCTCCCGTTTTTTATTTGTATAT 540
consensus_7006#1 ------------------------------------------------------------
consensus_7006#0 TTTTTAAAAAGAAAAGCGCGCGCCATATTTTTGTTTAAAAGCGTAATTCTTATCCAGTGA 600
consensus_7006#1 ----------------------------------------------GCAGAATCCCCCGA 14
**** **
consensus_7006#0 AATT-TTATACTTTTCTCTTCCTGTTTTTTTTTGCACATTTAATACTTTAAAATCATGAT 659
consensus_7006#1 GGTTATTATACTTTTCTCTTCCTGTTTTTTTTTGCACATTTAATACTTTAAAATCATGAT 74
** *******************************************************
consensus_7006#0 TTCATTCATATCCAGTGTTTGCTTTTTTTGGTTCTCCCGCTTTGGTTCATTGATTAAGAA 719
consensus_7006#1 TTCATTCATATCCAGTGTTTGCTTTTTTTGGTTCTCCCGCTT-GGTTCATTGATTAAGAA 133
****************************************** *****************
consensus_7006#0 GCGTTGTAGGGGAAAAAACAAGACACATATGTAGACCATCACCAATCGTGTTGTAGTGGA 779
consensus_7006#1 GCGTTGTAGGGGAAAAAACAAGACACATATGTAGACCATCACCAATCGTGTTGTAGTGGA 193
************************************************************
consensus_7006#0 CTTGGATAGCGCGTAGATGAAATGCGAGTTATTACTAA-TATCGGCTTTGTTGTGAA-GA 837
consensus_7006#1 CTTGGATAGCGCGTAGATGAAATGCGAGTTATTACTAACTATCGGCTTTGTTGTGAACGA 253
************************************** ****************** **
consensus_7006#0 AATCGGCTAAAA-----ATAAATGGAACTTCAACACTAGC-----AAAAAAGGCGCTTTG 887
consensus_7006#1 AATCGGCTAACNCANCTACACATGGCACTTCAACACTAGCCACACAACACAGGCGCTTCN 313
********** * * **** ************** ** * ********
consensus_7006#0 GAAAGA------TTCGGAAGTT--GTTAACACGTG-TGTGCTGACT-TCACTTCTACTTA 937
consensus_7006#1 GCGCAACACGACTTCGGAAGCTCGGTTAACACGTGCTGTGCTGACTATCACTTCTACCTT 373
* * ******** * *********** ********** ********** *
consensus_7006#0 AT---TATGTCG-TGTG--TCAAT--CCTAGCTGGTAGG--------ATAAAGGGAACCA 981
consensus_7006#1 ACCTCTATGTCGCTGCTGCTCAACTCCCTANCTGGTAGCGCACTCACACACGCGGAACCA 433
* ******* ** **** **** ******* * * *******
consensus_7006#0 AAC-ACACCACT---CAACACACTCTCTTAGACATTGTGGAACACTTCCCAACGCTTAGC 1037
consensus_7006#1 AACCACACCACCTCACACCACACTCTCTTAGACATTGTGGAACACTTCCCAACGCTTAGC 493
*** ******* ** ******************************************
consensus_7006#0 GCAACTATCAATAAAAGCTTAAGTTGCAGTAAAACAAAATTCTGACACAGCACGAAAAAA 1097
consensus_7006#1 GCAACTATCAATAAACAC--AGCTCTCAACGNTTTGCCACNCA---ACAACCCAAANACA 548
*************** * * * ** * * *** * * ** * *
consensus_7006#0 AAAAAACAACCCAAAAGAGATGAAGGGATTACGTAGTAGTGTGGTTGGAGGAAGGTTGGT 1157
consensus_7006#1 TATCCTGGANCCANCCAAGGCCAACCGAC-ACACA-CCCCACACACAACCNAAAACCCCC 606
* * *** ** ** ** ** * **
consensus_7006#0 GTAAACGATGATGATGG-ACTTGAAGAAGCGAGCGAGCAGATTGATCACCGTTTCCATGG 1216
consensus_7006#1 CCAAACACNCACGCNACCGCACCTGCCANCNCNCGCGCAACTTCACCCGCATACGCAT-- 664
**** * * * * * ** *** ** * * * * ***
consensus_7006#0 TTACGTTTTGAAGGTTAAATGGTGCAGGCCATACTGCGTGTTTCGGTCATTAAAATACCA 1276
consensus_7006#1 --ACACCNTGCCTGNGCCCCAGCGCCACNCCNGCGACACACCACGNCCACACACACACC- 721
** ** * * ** * * * ** ** * * ***
consensus_7006#0 AATTCAAATCGGTTTTTATTGTATGCCATTTATGGAACCCAGTCCCGACTCTTCCCTTTC 1336
consensus_7006#1 --------CCAGCNCGCACCAC---CCCCCCAACAACCNCACCACACACNCCCCC----- 765
* * * ** * * * ** * ** * **
consensus_7006#0 GCCAAGCGTCAACAC 1351
consensus_7006#1 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||