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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7015#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1205 fasta sequence
[CCGATACTGCTGTACAGAGCACTTGCTTGTATGCAATACGCAGCTGTTGCTTGCGTTCCTTTGCCGCTTACGCCAACAACCAGTACAGCAGTTTGAAGATAGGTGTCGTTTGTTCTTTATGCTCATACTATACATCAAACCATTGATTTAAGTGCATCACCATCATCATCATCATCAAGATAAGGAGAGGA-TTA-TTCGCTGTGTATTATAGTATAAAGTGTGAGATGAAAGGTGAACAACCGGGATGAGCAAAGAAAGAAGAACAACTATGAATCTGTTGCTGGATTGTATGCTTTTTATTCTGCTGGGTTTGTGTTTAGAACTAACACAGGAAGGAAGTCCCGTGATACTTGTGTGTAG---ACAAACAAAAAAAGAAAGAAGAGAAAAAAGTATCATAGTACAAATGAACGGGTTTATATAATGCGCGGCAGCATAAGGCAGGGACGAGCCAATGGTCTTTGATGTGTGTGATCTTTGATCTCTGAACCTATGCACGGTAAACGGTAACCGTTCGACACGAGAGAAAACACTAAGGTTACGATCAGGTTTATAATAATAATAGAAAAGTGCGAC-GGAGTATAGTTGTGTAATGATGCAAAACTCTAACGATCGCTTCGTAAACCCAAACCGTACGCGCAACATAACATGTGCAACAACATCATCGTCACCGTCTAGCAATACTCGACTAGTCTGCGGTTTTAATTTGAAAAGCCGGTTGAAAGGATGGGAAAACATTATGTCTACAGTGCTGTGCAGCAAAGCAGAATATTCCACATGCTATCCTTCCGGATGTTGTGGAAATAGAT-GGGGAAAGAAGAAGAATAGAGATTAAACTCAGTTCGCTGCTACACTCAATTTGAGTGAGTGGACCCGTGTACCGGTCATACACAGTACACACCTCCTGTGAGGCAATGTTACGGAGATGATTCACGTGGTGTAGGACAGAGCAGAACAGAAAAAAACGAATAAAAATTAACTCCATCATCATCCGCGCGCGCTGCAGCAGCAGCAGAAGAAGGACAGTTTACCTAGCCTAACAATATTGCAGTGTAGCAGTGCAACAAAGGGGCGAAACTCTCTGGCAAAAACTGTCCTCCGTGTGCCCCAAGCCCGTGCGGGGCAAGATGTTGCGAGAAAAATGTATGAAATTAAAACAAAAAGAGTATGTGAAGTAAACCGAATCAATAATAAAAAATTCTATAACC]
[+] EMBL BM582790 [CCGATACTGCTGTACAGAGCACTTGCTTGTATGCAATACGCAGCTGTTGCTTGCGTTCCTTTGCCGCTTACGCCAACAACCAGTACAGCAGTTTGAAGATAGGTGTCGTTTGTTCTTTATGCTCATACTATACATCAAACCATTGATTTAAGTGCATCACCATCATCATCATCATCAAGATAAGGAGAGGA TTA TTCGCTGTGTATTATAGTATAAAGTGTGAGATGAAAGGTGAACAACCGGGATGAGCAAAGAAAGAAGAACAACTATGAATCTGTTGCTGGATTGTATGCTTTTTATTCTGCTGGGTTTGTGTTTAGAACTAACACAGGAAGGAAGTCCCGTGATACTTGTGTGTAG ACAAACAAAAAAAGAAAGAAGAGAAAAAAGTATCATAGTACAAATGAACGGGTTTATATAATGCGCGGCAGCATAAGGCAGGGACGAGCCAGCGGTCTTTGATGTGTGTGATCTTTGATCTCTGAACCTATGCACGGTAAACGGTAACCGTTCGACACGAGAGAAAACACTAAGGTTACGATCAGGTTTATAATAATAATAGAAAAGTGCGACGGGAGTATAGTTGTGTAATGATGCAAACCTCTAACGATCGCTTCGTAAA CCAAACCGTACGCGC AACATGTGCAACAACAT ]
[+] EMBL BX623418 [ GTTCCTTTGCCGCTTACGCCAACAACCAGTACAGCAGTTTGAAGATAGGTGTCGTTTGTTCATTATGCTCATATTATACATCAAACCATTGATTTAAGTGCATCACCATCATCATCATCATCAAGATAAGGAGAGGATTTATTTCGCTGTGTATTATAGTATAAAGTGTGAGATGAAAGGTGAACAACCGGGATGAGCAAAGAAAGAAGAACAACTATGAATCTGTTGCTGGATTGTATGCTTTTTATTCTGCTGGGTTTGTGTTTAGAACTAACACAGGAAGGAAGTCCCGTGATACTTGTATGTAGACAACAAAAAAAAAAAGAAGGAAGAGAAAAAAGTATCATAGTACAAATGAACGGGTTTATATAATGCGCGGCAGTATAAGGCAGGGACGAGCCAATGGTCTTTGATGTGTGTGATCTTTGATCTCTGAACCTATGCACGGTAAACGGTAACCGTTCGACACGAGAGAAAACACTAAGGTTACGATCAGGTTTATAATAATAATAGAAAAGTGCGAC GGAGTATAGTTGTGTAATGATGCAAAACTCTAACGATCGCTTCGTAAACCCAAACCGTACGCGCAACATAACATGTGCAACAACATCATCGTCACCGTCTAGCAATACTCGACTAGTCTGCGGTTTTAATTTGAAAAGCCGGTTGAAAGGATGGGAAAACATTATGTCTACAGTGCTGTGCAGCAAAGCAGAATATTCCACATGCTATCCTTCCNGATGTTGTGGAAATAGATGGGGGAAAGAAGAAGAATAGAGATTA ]
[+] EMBL BX617021 [ GAGCCAATGGTCTTTGATGTGTGTGATCTTTGATCTCTGAACCTATGCACGGTAAACGGTAACCGTTCGACACGAGAGAAAACACTAAGGTTACGATCAGGTTTATAATAATAATAGAAAAGTGCGAC GGAGTATAGTTGTGTAATGATGCAAAACTCTAACGATCGCTTCGTAAACCCAAACCGTACGCGCAACATAACATGTGCAACAACATCATCGTCACCGTCTAGCAATACTCGACTAGTCTGCGTTTTTAATTTGAAAAGCCGGTTGAAAGGATGGGAAAACATTATGTCTACAGTGCTGTGCAGCAAAGCAGAATATTCCACATGCTATCCTTCCGGATGTTGTGGAAATAGAT GGGGAAAGAAGAAGAATAGAGATTAAACTCAGTTCGCTGCTACACTCAATTTGAGTGAGTGGACCCGTGTACCGGTCATACACAGTACACACCTCCTGTGAGGCAATGTTACGGAGATGATTCACGTGGTGTAGGACAGAGCAGAACAGAAAAAAACGAATAAAAATTAACTCCATCATCATCCGCGCGCGCTGCAGCAGCAGCAGAAGAAGGACAGTTTACCTAGCCTAACAATATTGCAGTGTAGCAGTGCAACAAAGGGGCGAAACTCTCTGGCAAAAACTGTCCTCCGTGTGCCCCAAGCCCGTGCGGGGCAAGATGTTGCGAGAAAAATGTATGAAATTAAAACAAAAAGAGTATGTGAAGTAAACCG ]
[+] EMBL BM605470 [ ccgC GGAGTATAGTTGTGTAATGATGCAAAACTCTAACGATCGCTTCGTAAACCCAAACCGTACGCGCAACATAACATGTGCAACAACATCATCGTCACCGTCTAGCAATACTCGACTAGTCTGCGGTTTTAATTTGAAAAGCCGGTTGAAAGGATGGGAAAACATTATGTCTACAGTGCTGTGCAGCAAAGCAGAATATTCCACATGCTATCCTTCCGGATGTTGTGGAAATAGAT GGGGAAAGAAGAAGAATAGAGATTAAACTCAGTTCGCTGCTACACTCAATTTGAGTGAGGGGACCCGTGTACCGGTCATACACAGTACACACCTCCTGTGAGGCAATGTTACGGAGATGATTCACGTGGTGTAGGACAGAGCAGAACAGAAAAAAACGAATAAAAATTAACTCCATCATCATCCGCGCGCGCTGCAGCAGCAGCAGAAGAAGGACAGTTTACCTAGCCTAACAATATTGCAGTGTAGCAGTGCAACAAAGGGGCGAAACTCTCTGGCAAAAACTGTCCTCCGTGTGCCCCAAGCCCGTGCGGGGCAAGATGTTGCGAGAAAAATGTATGAAATTAAAACAAAAAGAGTATGTGAAGTAAACCGAATCAATAATAAAAAATTCTATAACC]
consensusID : consensus_7015#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 634 fasta sequence
[GACCCACGCGTCCGCACGGTAAACGGTAACCGTTCGACACGAGAGAAAACACTAAGGTTACGATCAGGTTTATAATAATAATAGAAAAGTGCGACGGAGTATAGTTGTGTAATGATGCAAAACTCTAACGATCGCTTCGTAAACCCAAACCGTACGCGCAACATAACATGTGCAACAACATCATCGTCACCGTCTAGCAATACTCGACTAGTCTGCGGTTTTAATTTGAAAAGCCGGTTGAAAGGATGGGAAAACATTATGTCTACAGTGCTGTGCAGCAAAGCAGAATATTCCACATGCTATCCTTCCGGATGTTGTGGAAATAGATGGGGAAAGAAGAAGAATAGAGATTAAACTCAGTTCGCTGCTACACTCAATTTGAGTGAGGGGACCCGTGTACCGGTCATACACAGTACACACCTCCTGTGAGGCAATGTTACGGAGATGATTCACGTGGTGTAGGACAGAGCAGAACAGAAAAAAACGAATAAAAATTAACTCCATCATCATCCGCGCGCGCTGCAGCAGCAGCAGAAGAAGGACAGTTTACCTAGCCTAACAATATTGCAGTGTAGCAGTGCAACAAAGGGGCGAAACTCTCTGGCAAAAACTGTCCTCCGTGTGCCCCAAGCCC]
[+] EMBL BM638790 [GACCCACGCGTCCGCACGGTAAACGGTAACCGTTCGACACGAGAGAAAACACTAAGGTTACGATCAGGTTTATAATAATAATAGAAAAGTGCGACGGAGTATAGTTGTGTAATGATGCAAAACTCTAACGATCGCTTCGTAAACCCAAACCGTACGCGCAACATAACATGTGCAACAACATCATCGTCACCGTCTAGCAATACTCGACTAGTCTGCGGTTTTAATTTGAAAAGCCGGTTGAAAGGATGGGAAAACATTATGTCTACAGTGCTGTGCAGCAAAGCAGAATATTCCACATGCTATCCTTCCGGATGTTGTGGAAATAGATGGGGAAAGAAGAAGAATAGAGATTAAACTCAGTTCGCTGCTACACTCAATTTGAGTGAGGGGACCCGTGTACCGGTCATACACAGTACACACCTCCTGTGAGGCAATGTTACGGAGATGATTCACGTGGTGTAGGACAGAGCAGAACAGAAAAAAACGAATAAAAATTAACTCCATCATCATCCGCGCGCGCTGCAGCAGCAGCAGAAGAAGGACAGTTTACCTAGCCTAACAATATTGCAGTGTAGCAGTGCAACAAAGGGGCGAAACTCTCTGGCAAAAACTGTCCTCCGTGTGCCCCAAGCCC]
[+] EMBL BX617289 [ TGTAATGATGCAAAACTCTAACGATCGCTTCGTAAACCCAAACCGTACGCGCAACATAACATGTGCAACAACATCATCGTCACCGTCTAGCAATACTCGACTAGTCTGCGGTTTTAATTTGAAAAGCCGGTTGAAAGGATGGGAAAACATTATGTCTACAGTGCTGTGCAGCAAAGCAGAATATTCCACATGCTATCCTTCCGGATGTTGTGGAAATAGATGGGGAAAGAAGAAGAATAGAGATTAAACTCAGTTCGCTGCTACACTCAATTTGAGTGAGGGGACCCGTGTACCGGTCATACACAGTACACACCTCCTGTGAGGCAATGTTACGGAGATGATTCACGTGGTGTAGGACAG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7015#0 CCGATACTGCTGTACAGAGCACTTGCTTGTATGCAATACGCAGCTGTTGCTTGCGTTCCT 60
consensus_7015#1 ------------------------------------------------------------
consensus_7015#0 TTGCCGCTTACGCCAACAACCAGTACAGCAGTTTGAAGATAGGTGTCGTTTGTTCTTTAT 120
consensus_7015#1 ------------------------------------------------------------
consensus_7015#0 GCTCATACTATACATCAAACCATTGATTTAAGTGCATCACCATCATCATCATCATCAAGA 180
consensus_7015#1 ------------------------------------------------------------
consensus_7015#0 TAAGGAGAGGATTATTCGCTGTGTATTATAGTATAAAGTGTGAGATGAAAGGTGAACAAC 240
consensus_7015#1 ------------------------------------------------------------
consensus_7015#0 CGGGATGAGCAAAGAAAGAAGAACAACTATGAATCTGTTGCTGGATTGTATGCTTTTTAT 300
consensus_7015#1 ------------------------------------------------------------
consensus_7015#0 TCTGCTGGGTTTGTGTTTAGAACTAACACAGGAAGGAAGTCCCGTGATACTTGTGTGTAG 360
consensus_7015#1 ------------------------------------------------------------
consensus_7015#0 ACAAACAAAAAAAGAAAGAAGAGAAAAAAGTATCATAGTACAAATGAACGGGTTTATATA 420
consensus_7015#1 ------------------------------------------------------------
consensus_7015#0 ATGCGCGGCAGCATAAGGCAGGGACGAGCCAATGGTCTTTGATGTGTGTGATCTTTGATC 480
consensus_7015#1 --------------------------------------------------------GACC 4
** *
consensus_7015#0 TCTGAACCTATGCACGGTAAACGGTAACCGTTCGACACGAGAGAAAACACTAAGGTTACG 540
consensus_7015#1 CACGCGTC--CGCACGGTAAACGGTAACCGTTCGACACGAGAGAAAACACTAAGGTTACG 62
* * *************************************************
consensus_7015#0 ATCAGGTTTATAATAATAATAGAAAAGTGCGACGGAGTATAGTTGTGTAATGATGCAAAA 600
consensus_7015#1 ATCAGGTTTATAATAATAATAGAAAAGTGCGACGGAGTATAGTTGTGTAATGATGCAAAA 122
************************************************************
consensus_7015#0 CTCTAACGATCGCTTCGTAAACCCAAACCGTACGCGCAACATAACATGTGCAACAACATC 660
consensus_7015#1 CTCTAACGATCGCTTCGTAAACCCAAACCGTACGCGCAACATAACATGTGCAACAACATC 182
************************************************************
consensus_7015#0 ATCGTCACCGTCTAGCAATACTCGACTAGTCTGCGGTTTTAATTTGAAAAGCCGGTTGAA 720
consensus_7015#1 ATCGTCACCGTCTAGCAATACTCGACTAGTCTGCGGTTTTAATTTGAAAAGCCGGTTGAA 242
************************************************************
consensus_7015#0 AGGATGGGAAAACATTATGTCTACAGTGCTGTGCAGCAAAGCAGAATATTCCACATGCTA 780
consensus_7015#1 AGGATGGGAAAACATTATGTCTACAGTGCTGTGCAGCAAAGCAGAATATTCCACATGCTA 302
************************************************************
consensus_7015#0 TCCTTCCGGATGTTGTGGAAATAGATGGGGAAAGAAGAAGAATAGAGATTAAACTCAGTT 840
consensus_7015#1 TCCTTCCGGATGTTGTGGAAATAGATGGGGAAAGAAGAAGAATAGAGATTAAACTCAGTT 362
************************************************************
consensus_7015#0 CGCTGCTACACTCAATTTGAGTGAGTGGACCCGTGTACCGGTCATACACAGTACACACCT 900
consensus_7015#1 CGCTGCTACACTCAATTTGAGTGAGGGGACCCGTGTACCGGTCATACACAGTACACACCT 422
************************* **********************************
consensus_7015#0 CCTGTGAGGCAATGTTACGGAGATGATTCACGTGGTGTAGGACAGAGCAGAACAGAAAAA 960
consensus_7015#1 CCTGTGAGGCAATGTTACGGAGATGATTCACGTGGTGTAGGACAGAGCAGAACAGAAAAA 482
************************************************************
consensus_7015#0 AACGAATAAAAATTAACTCCATCATCATCCGCGCGCGCTGCAGCAGCAGCAGAAGAAGGA 1020
consensus_7015#1 AACGAATAAAAATTAACTCCATCATCATCCGCGCGCGCTGCAGCAGCAGCAGAAGAAGGA 542
************************************************************
consensus_7015#0 CAGTTTACCTAGCCTAACAATATTGCAGTGTAGCAGTGCAACAAAGGGGCGAAACTCTCT 1080
consensus_7015#1 CAGTTTACCTAGCCTAACAATATTGCAGTGTAGCAGTGCAACAAAGGGGCGAAACTCTCT 602
************************************************************
consensus_7015#0 GGCAAAAACTGTCCTCCGTGTGCCCCAAGCCCGTGCGGGGCAAGATGTTGCGAGAAAAAT 1140
consensus_7015#1 GGCAAAAACTGTCCTCCGTGTGCCCCAAGCCC---------------------------- 634
********************************
consensus_7015#0 GTATGAAATTAAAACAAAAAGAGTATGTGAAGTAAACCGAATCAATAATAAAAAATTCTA 1200
consensus_7015#1 ------------------------------------------------------------
consensus_7015#0 TAACC 1205
consensus_7015#1 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||