These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7026#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1080 fasta sequence [CCGCGTTCTCGCACGCCAAGTGTGCGCTCGCAGTGTGTGTGTTGTGCTCCGCGTGGAATGTGCGTAAGAGGCTGGTCACGGTGACACACCAGAGTAGGCCACGCAGCGAATCACAGTCTCCTTTCCGTTCGTGCCGTGCCGTGGTTCGTGCAGCACAATAGTCGTGAATTTGTGATGGTGGGGTGTGAACTGTTGCGAGTGAAAGACACAACATCACCACCCATTATGTAAACAGTTCCGCGGGCGCAAGATGTACTTCATTGCCGCGTAACCTCTACCATCCCCCTACACAGCCGTGTTGCCGTGGCCGTGTTCCGGTAGCGCAATTTGTGGCAAATTCTCTATTGATAAGCTCGTGTGCGAGGGAAAAGTGCAATCGGTGCTCGTTCTTGGGGTGCAGAGAGTGCAGTCCAACCACGCAATCTAACGGGATAAGCGACAATCGCGGCTTCCCAC---TGC-CACCCAACGGGACTTTCATGTTAGTGAGCAGCAGCATCTCAAGGCAGACGGAATTCCACTCCAGCACACAGCATCGGTGTGAGATTTCCCCATTCCCACAACCACCGTCCCAGGTGCTCCAAACTCCTCAAGACGACGAACCCCACTTACACAGGAGATTGACCACGTTCGAGGCGGTACTTTCACTGGTCGTCGAATTGAGAGCGTGCTGCTGCTGCGCCTATGATCACGAGCGCGACCTGCCTTTAGGCACGAAACGGTGCGTCGTTACAGTGAACGTTCAACCCCTGCCCTGGTTGCTGGCCTGCGATCGCCCTCCAACGTACATGTGCCATTACACAACCCACCGCAGAAAACAGGCGCGGGGTGCGTAATAGCGCCAGTGCAGTCCCGGGTGAAATGTACCTTTCGGCTTAAGTTTGGTCAAAGGTGTGTGTGTGTGTGCGTGCTTGAAAATAAAAACGGAAACAAAACTAAAAGACTCGGTAAAAAGTACGGAAATTGGGGACAAGTAAAGTGACCTAAAACAAAAAACCATCAAAGCAAACATGAGCGCGAAGGATCAGCAGGATCGCGCGACGAAAACGATCCGCGTTGGATCGCGCAAAAGTGAGCTGGCAC] [+] EMBL BM655729 [CCGCGTTCTCGCACGCCAAGTGTGCGCTCGCAGTGTGTGTGTTGTGCTCCGCGTGGAATGTGCGTAAGAGGCTGGTCACGGTGACACACCAGAGTAGGCCACGCAGCGAATCACAGTCTCCTTTCCGTTCGTGCCGTGCCGTGGTTCGTGCAGCACAATAGTCGTGAATTTGTGATGGTGGGGTGTGAACTGTTGCGAGTGAAAGACACAACATCACCACCCATTATGTAAACAGTTCCGCGGGCGCAAGATGTACTTCATTGCCGCGTAACCTCTACCATCCTTTTACACAGCCGTGTTGCCGTGGCCGTGTTCCGGTAGCGCAATTTGTGGCAAATTCTCTATTGATAAGCTCGTGTGCGAGGGAAAAGTGCAATCGGTGCTCGTTCTTGGGGTGCAGAGAGTGCAGTCCAACCACGCAATCTAACGGGATAAGCGACAATCGCGGCTTCCCAC TGC CACCCAACGGGACTTTCATGTTAGTGAGCAGCAGCATCTCAAGGCAGACGGAATTCCACTCCAGCACACAGCATCGGTGTGAGATTTCCCCATTCCCACAACCACCGTCCCAGGTGCTCCAAACTCCTCAAGACGACGAACCCCACTTACACAGGAGATTGACCACGTTCGAGGCGGTACTTTCACTG ] [+] EMBL BM646221 [ ccGCTCCGCGTGGAATGTGCGTAAGAGGCTGGTCACGGTGACACACCAGAGTAGGCCACGCAGCGAATCACAGTCTCCTTTCCGTTCGTGCCGTGCCGTGGTTCGTGCAGCACAATAGTCGTGAATTTGTGATGGTGGGGTGTGAACTGTTGCGAGTGAAAGACACAACATCACCACCCATTATGTAAACAGTTCCGCGGGCGCAAGATGTACTTCATTGCCGCGTAACCTCTACCATCCCCCTACACAGCCGTGTTGCCGTGGCCGTGTTCCGGTAGCGCAATTTGTGGCAAATTCTCTATTGATAAGCTCGTGTGCGAGGGAAAAGTGCAATCGGTGCTCGTTCTTGGGGTGCAGAGAGTGCAGTCCAACCACGCAATCTAACGGGATAAGCGACAATCGCGGCTTCCCAC TGC CACCCAACGGGACTTTCATGTTAGTGAGCAGCAGCATCTCAAGGCAGACGGAATTCCACTCCAGCACACAGCATCGGTGTGAGATTTCCCCATTCCCACAACCACCGTCCCAGGTGCTCCAAACTCCTCAAGACGACGAACCCCACTTACACAGGAGATTGACCACGTTCGAGGCGGTACTTTCACTGGTCGTCGAATTGAGAGCGTGCTGCTGCTGCGCCTATGATCACGAGCGCGACCTGCCTTTAGGCACGAAACGGTGCGTCGTTACAGTGA ] [+] EMBL BM619326 [ ccgGCGTGGAATGTGCGTAAGAGGCTGGTCACGGTGACACACCAGAGTAGGCCACGCAGCGAATCACAGTCTCCTTTCCGTTCGTGCCGTGCCGTGGTTCGTGCAGCACAATAGTCGTGAATTTGTGATGGTGGGGTGTGAACTGTTGCGAGTGAAAGACACAACATCACCACCCATTATGTAAACAGTTCCGCGGGCGCAAGATGTACTTCATTGCCGCGTAACCTCTACCATCCCCCTACACAGCCGTGTTGCCGTGGCCGTGTTCCGGTAGCGCAATTTGTGGCAAATTCTCTATTGATAAGCTCGTGTGCGAGGGAAAAGTGCAATCGGTGCTCGTTCTTGGGGTGCAGAGAGTGCAGTCCAACCACGCAATCTAACGGGATAAGCGACAATCGCGGCTTCCCAC TGC CACCCAACGGGACTTTCATGTTAGTGAGCAGCAGCATCTCAAGGCAGACGGAATTCCACTCCAGCACACAGCATCGGTGTGAGATTTCCCCATTCCCACAACCACCGTCCCAGGTGCTCCAAACTCCTCAAGACGACGAACCCCACTTACACAGGAGATTGACCACGTTCGAGGCGGTACTTTCACTGGTCGTCGAATTGAGAGCGTGCTGCTGCTGCGCCTATGATCACGAGCGCGACCTGCCTTTAGGCACGAAACGGTGCGTC ] [+] EMBL BM596256 [ ccgcccaCGCGTCCGCCCACGCGTCCGCACCCAACGGGACTTTCATGTTAGTGAGCAGCAGCATCTCAAGGCAGACGGAATTCCACTCCAGCACACAGCATCGGTGTGAGATTTCCCCATTCCCACAACCACCGTCCCAGGTGCTCCAAACTCCTCAAGACGACGAACCCCACTTACACAGGAGATTGACCACGTTCGAGGCGGTACTTTCACTGGTCGTCGAATTGAGAGCGTGCTGCTGCTGCGCCTATGATCACGAGCGCGACCTGCCTTTAGGCACGAAACGGTGCGTCGTTACAGTGAACGTTCAACCCCTGCCCTGGTTGCTGGCCTGCGATCGCCCTCCAACGTACATGTGCCATTACACAACCCACCGCAGAAAACAGGCGCGGGGTGCGTAATAGCGCCAGTGCAGTCCCGGGTGAAATGTACCTTTCGGCTTAAGTTTGGTCAAAGGTGTGTGTGTGTGTGCGTGCTTGAAAATAAAAACGGAAACAAAACTAAAAGACTCGGTAAAAAGTACGGAAATTGGGGACAAGTAAAGTGACCTAAAACAAAAAACCATCAAAGCAAACATGAGCGCGAAGGATCAGCAGGATCGCGCGACGAAAACGATCCGCGTTGGATCGCGCAAAAGTGAGCTGGCAC] consensusID : consensus_7026#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [GTGGAATGTGCGTAAGAGGCTGGTCANNGGTGACACACCAGAGTAGGCCACGCAGCGAATCACAGTCTCCTTTCCGTGCCGTGCCGTGCCGTGCCGTGTTTCGTGCAGCACAAAAGTCGCGAATTTGTGACGGTGGGGAACTGTGAACTGTTGCGAGTGAAAGACACACCATCACCACCCATTATGTAAACAGTTCCGCGGGCGCAAGTTGTAACCTCTACCATCCCCCTGTACAGCCGTGTTGCCGTGGCCGTGTTCCGGTAGCGCAATTTGTGGCAAATTCTCTATTGATAAGCTCGTGTGCGAGGGAAAAGTGCAATTTTGCAAAAGTGCAAAAGTGCTCGTTCNTTGGGGTGCAGAGAGTGCAGTCCAACCACGCAATCTAACGGGATAAGCGACAATCACGGCTCCCCACTGCCACCCAACNNGACTTTCATGTTAGTGAGCAGCAGCATCTCAANGCAGACGGAATTCCACTCCAGCACACAGCATCNNTGTGAGATTTCCCCATTCCCACAACCACCGTCCCAAGGTGCTCCCAAACTCCCTCAANGACGACGANCCCCCACTNACACAANGNAGATTGACCACGGTTCGAGGCGGTACTTTCACTGGTCGTCGAATTGAGAGCGTGCTGCTGCTGCTGCACNTATGATC] [+] EMBL BX619656 [GTGGAATGTGCGTAAGAGGCTGGTCANNGGTGACACACCAGAGTAGGCCACGCAGCGAATCACAGTCTCCTTTCCGTGCCGTGCCGTGCCGTGCCGTGTTTCGTGCAGCACAAAAGTCGCGAATTTGTGACGGTGGGGAACTGTGAACTGTTGCGAGTGAAAGACACACCATCACCACCCATTATGTAAACAGTTCCGCGGGCGCAAGTTGTAACCTCTACCATCCCCCTGTACAGCCGTGTTGCCGTGGCCGTGTTCCGGTAGCGCAATTTGTGGCAAATTCTCTATTGATAAGCTCGTGTGCGAGGGAAAAGTGCAATTTTGCAAAAGTGCAAAAGTGCTCGTTCNTTGGGGTGCAGAGAGTGCAGTCCAACCACGCAATCTAACGGGATAAGCGACAATCACGGCTCCCCACTGCCACCCAACNNGACTTTCATGTTAGTGAGCAGCAGCATCTCAANGCAGACGGAATTCCACTCCAGCACACAGCATCNNTGTGAGATTTCCCCATTCCCACAACCACCGTCCCAAGGTGCTCCCAAACTCCCTCAANGACGACGANCCCCCACTNACACAANGNAGATTGACCACGGTTCGAGGCGGTACTTTCACTGGTCGTCGAATTGAGAGCGTGCTGCTGCTGCTGCACNTATGATC] consensusID : consensus_7026#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 313 fasta sequence [CCGCCCACGCGTCCGCGGACGCGTGGGCGCACGCCAAGTGTGCGCTCGCAGTGTGTGTGTTGTGCTCCGCGTGGAATGTGCGTACGAGGCTGGTCACGGTGACACACCAGAGTAGGCCACGCAGCGAATCACAGTCTTCTTTCCGTTCGTGCCGTTCCGTGCCGTGCCGTGGTTCGTGCAGCACAAAAGTCGTGAATTTGTGACGGTGGGGTGTGAACTGTTGCGAGTGAAAGACACACCATCACCACCCATTATGTAAACAGTTCCGCGGGCGCAAGTAGTACTTCATTGCCGCGTAACCTCTACCATCCCC] [+] EMBL BM632145 [CCGCCCACGCGTCCGCGGACGCGTGGGCGCACGCCAAGTGTGCGCTCGCAGTGTGTGTGTTGTGCTCCGCGTGGAATGTGCGTACGAGGCTGGTCACGGTGACACACCAGAGTAGGCCACGCAGCGAATCACAGTCTTCTTTCCGTTCGTGCCGTTCCGTGCCGTGCCGTGGTTCGTGCAGCACAAAAGTCGTGAATTTGTGACGGTGGGGTGTGAACTGTTGCGAGTGAAAGACACACCATCACCACCCATTATGTAAACAGTTCCGCGGGCGCAAGTAGTACTTCATTGCCGCGTAACCTCTACCATCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7026#0 ------------------CCGCGTTCTCGCACGCCAAGTGTGCGCTCGCAGTGTGTGTGT 42 consensus_7026#1 ------------------------------------------------------------ consensus_7026#2 CCGCCCACGCGTCCGCGGACGCGTGGGCGCACGCCAAGTGTGCGCTCGCAGTGTGTGTGT 60 consensus_7026#0 TGTGCTCCGCGTGGAATGTGCGTAAGAGGCTGGTCACGG-TGACACACCAGAGTAGGCCA 101 consensus_7026#1 ----------GTGGAATGTGCGTAAGAGGCTGGTCANNGGTGACACACCAGAGTAGGCCA 50 consensus_7026#2 TGTGCTCCGCGTGGAATGTGCGTACGAGGCTGGTCACGG-TGACACACCAGAGTAGGCCA 119 ************** *********** * ******************** consensus_7026#0 CGCAGCGAATCACAGTCTCCTTTCCGT----------TCGTGCCGTGCCGTGGTTCGTGC 151 consensus_7026#1 CGCAGCGAATCACAGTCTCCTTTCCGT----GCCGTGCCGTGCCGTGCCGTGTTTCGTGC 106 consensus_7026#2 CGCAGCGAATCACAGTCTTCTTTCCGTTCGTGCCGTTCCGTGCCGTGCCGTGGTTCGTGC 179 ****************** ******** ************** ******* consensus_7026#0 AGCACAATAGTCGTGAATTTGTGATGGTGGGG---TGTGAACTGTTGCGAGTGAAAGACA 208 consensus_7026#1 AGCACAAAAGTCGCGAATTTGTGACGGTGGGGAACTGTGAACTGTTGCGAGTGAAAGACA 166 consensus_7026#2 AGCACAAAAGTCGTGAATTTGTGACGGTGGGG---TGTGAACTGTTGCGAGTGAAAGACA 236 ******* ***** ********** ******* ************************* consensus_7026#0 CAACATCACCACCCATTATGTAAACAGTTCCGCGGGCGCAAGATGTACTTCATTGCCGCG 268 consensus_7026#1 CACCATCACCACCCATTATGTAAACAGTTCCGCGGGCGCAAGTTGTA------------- 213 consensus_7026#2 CACCATCACCACCCATTATGTAAACAGTTCCGCGGGCGCAAGTAGTACTTCATTGCCGCG 296 ** *************************************** *** consensus_7026#0 TAACCTCTACCATCCCCCTACACAGCCGTGTTGCCGTGGCCGTGTTCCGGTAGCGCAATT 328 consensus_7026#1 --ACCTCTACCATCCCCCTGTACAGCCGTGTTGCCGTGGCCGTGTTCCGGTAGCGCAATT 271 consensus_7026#2 TAACCTCTACCATCCCC------------------------------------------- 313 *************** consensus_7026#0 TGTGGCAAATTCTCTATTGATAAGCTCGTGTGCGAGGGAAAAGTGCAATC---------- 378 consensus_7026#1 TGTGGCAAATTCTCTATTGATAAGCTCGTGTGCGAGGGAAAAGTGCAATTTTGCAAAAGT 331 consensus_7026#2 ------------------------------------------------------------ consensus_7026#0 -----GGTGCTCGTTCTT-GGGGTGCAGAGAGTGCAGTCCAACCACGCAATCTAACGGGA 432 consensus_7026#1 GCAAAAGTGCTCGTTCNTTGGGGTGCAGAGAGTGCAGTCCAACCACGCAATCTAACGGGA 391 consensus_7026#2 ------------------------------------------------------------ consensus_7026#0 TAAGCGACAATCGCGGCTTCCCACTGCCACCCAACGGGACTTTCATGTTAGTGAGCAGCA 492 consensus_7026#1 TAAGCGACAATCACGGCTCCCCACTGCCACCCAACNNGACTTTCATGTTAGTGAGCAGCA 451 consensus_7026#2 ------------------------------------------------------------ consensus_7026#0 GCATCTCAAGGCAGACGGAATTCCACTCCAGCACACAGCATCGGTGTGAGATTTCCCCAT 552 consensus_7026#1 GCATCTCAANGCAGACGGAATTCCACTCCAGCACACAGCATCNNTGTGAGATTTCCCCAT 511 consensus_7026#2 ------------------------------------------------------------ consensus_7026#0 TCCCACAACCACCGTCCCA-GGTGCTCC-AAACTCCTC--AAGACGACGAACCCC-ACTT 607 consensus_7026#1 TCCCACAACCACCGTCCCAAGGTGCTCCCAAACTCCCTCAANGACGACGANCCCCCACTN 571 consensus_7026#2 ------------------------------------------------------------ consensus_7026#0 ACACA--GGAGATTGACCACG-TTCGAGGCGGTACTTTCACTGGTCGTCGAATTGAGAGC 664 consensus_7026#1 ACACAANGNAGATTGACCACGGTTCGAGGCGGTACTTTCACTGGTCGTCGAATTGAGAGC 631 consensus_7026#2 ------------------------------------------------------------ consensus_7026#0 GTGCTGCTGCTGC---GCCTATGATCACGAGCGCGACCTGCCTTTAGGCACGAAACGGTG 721 consensus_7026#1 GTGCTGCTGCTGCTGCACNTATGATC---------------------------------- 657 consensus_7026#2 ------------------------------------------------------------ consensus_7026#0 CGTCGTTACAGTGAACGTTCAACCCCTGCCCTGGTTGCTGGCCTGCGATCGCCCTCCAAC 781 consensus_7026#1 ------------------------------------------------------------ consensus_7026#2 ------------------------------------------------------------ consensus_7026#0 GTACATGTGCCATTACACAACCCACCGCAGAAAACAGGCGCGGGGTGCGTAATAGCGCCA 841 consensus_7026#1 ------------------------------------------------------------ consensus_7026#2 ------------------------------------------------------------ consensus_7026#0 GTGCAGTCCCGGGTGAAATGTACCTTTCGGCTTAAGTTTGGTCAAAGGTGTGTGTGTGTG 901 consensus_7026#1 ------------------------------------------------------------ consensus_7026#2 ------------------------------------------------------------ consensus_7026#0 TGCGTGCTTGAAAATAAAAACGGAAACAAAACTAAAAGACTCGGTAAAAAGTACGGAAAT 961 consensus_7026#1 ------------------------------------------------------------ consensus_7026#2 ------------------------------------------------------------ consensus_7026#0 TGGGGACAAGTAAAGTGACCTAAAACAAAAAACCATCAAAGCAAACATGAGCGCGAAGGA 1021 consensus_7026#1 ------------------------------------------------------------ consensus_7026#2 ------------------------------------------------------------ consensus_7026#0 TCAGCAGGATCGCGCGACGAAAACGATCCGCGTTGGATCGCGCAAAAGTGAGCTGGCAC 1080 consensus_7026#1 ----------------------------------------------------------- consensus_7026#2 ----------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||