These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7036#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1954 fasta sequence [GCCCGTTTAAGCGTCTTCTTTATTCAGAGTCATCCAAACCATCCCCATCCTTGATGCCCATTTTATCGTCGTACTCCTCTTCGGTGATTTTTTTCCTTTTCACTTTTTTCAACAATCGAATATCGTTGGCCAGCTCCTCGAGGTCTTCCTGCGAATATT--TGGTCCGTTTCTTTTTGGCCGGCACTGCTTCACCCGCCTCGATGGCGGCCTTTCGTACCTGTTTCTTTTCCCTTCGCTTCTTACGGATTTCCTTCCGCTCCTCGCGTGCCTTGCTGGCCTGCTCCCAGGGTATCGTTTTCTTCCGGATCAACTTCTTCTTCCCCTTCCATTCGCCTGTTTCGGCGTACGTTTTCAGCTTCGCCTGAAATGACGCTTGCTTTTGCTTATCCTTGTACGCTAGCTTGAATACGTCCACCAACTGTTCTGGTCCTTGGAACGTTTCCTTGAACTGTGGCTTCATCTCGGGCATGCGGGGCAACTGCAGCAGTTCGTAGCTGGTCGCTACCTTACCGAGATCGAGATCCTTCAATCGCAGGATTAAATTGCACTCGTGCTTACTGTACGCCTGCACGTGCGACACAAACGCTCGATTCGCTTGATCGAATGTGGCGCGATCCGTCTTTTGCAGCTGATGCAGTTTGCGTAACGTTTCCGCCAATCTTGCTTCGGGAATTTCCAGTTCCACCTCCTTGAGGGCAACCTTTTGATTGCGCGTCAGAAAGTCCACGTAAGCGTCCTCGGTCGGCAGCAGCATAATTAGCGCATTACCTTCCGATCCCTGGCGTGCTGTGCGGCCTACACGATGCACAAATGCGGCCGCACTGGACGGTGGATCCCACTGTAGTACCCAGTCCACCTCGGGAATGTCGACGCCACGGGCAAGCACATCGGTACAGAGCAGCAGCGAACTGTCGGTTCGCGGAACGACTGCAGTATTCCGAAGCGTTGCGATTTCATTTTCCCGTGCAGCCCCAGTACTTGCATCGAGGGCACCAGAGCCGCCATAGCAACGGACCAATATTCAACGCAAGCGCACGTTGGTAAGAATAGCATCGCTTTCTTGATCTGTTGCGAGCTTATAAAGTCGAGCATAGCGACCATCTTCTGTTCCGGTTCGACGATCAGGTAGTAATTTTGCAGCAGCTTCGGCGTACTTGTGGTTGCCTTCATCGCGGACGCTCACCAGCACGGGATTGCGTAAACCGGCGCGCATTAAATCCTTCACCTCCTTGGTTTGCGTTGCCGAAAACAGTCCCGTACGGCGCTGGCGGGGCAGATATGCGAGGATCGTGTTGATTGTCGCCTCAAA-CCCCATG-TCGAGCAGGCGGTCCGCCTCGT-CCAGTAC-AAGCAGCTCCAGATTCTTGACCTTTGCAGCCAAATTTAGATCGCCTTTGCGTTCAAACAGATCCTGCAAGCGACCGGGTGTGGCAACGAGTATGTTGGCACCTTGCTTCAGGATCGACATCACGTCTTCCTCTACCGAGTTTCCTCCGATGAGCATTTTCTGCCGGAAGCACCTCAACTCATCGTGGGCCAGAAATTCGGACAGCACGTCGTGAA-TCTGAGTGGCTAGTTCGCGCGTGGGCGAAACGATCACGGCCCCGATTTCATGCTTCTTCCATGCCTCACTTCGCTTCCGTGGGAGCAGCAGCTCCAGCAGGGGGACGAGGAATGCTAGCGTTTTTCCTGAACCCGTCACCGCCTCTGCTGCCACGTCTTTGTAGGACAAGAGCAGGGGAATGGTGGCTCCCTGCACCGGTGTCATCTTATCGAATCCGGGCCTCTTTATCACCTCGAGCACTGGCGCACTTAGTGGGGTGGACAGCTCGGTCCATTTGCCGCTCGGTCGTGGCATCTTTACATGTGGAGCACTTTTTGAATGTTTGAGGACGGATTAAAAAATGTTGAAATTTCCCCCGTAAAATCACACAACACTCTGCGGCAGTTCCACCGG] [+] EMBL CNS08FWP [GCCCGTTTAAGCGTCTTCTTTATTCAGAGTCATCCAAACCATCCCCATCCTTGATGCCCATTTTATCGTCGTACTCCTCTTCGGTGATTTTTTTCCTTTTCACTTTTTTCAACAATCGAATATCGTTGGCCAGCTCCTCGAGGTCTTCCTGCGAATATT TGGTCCGTTTCTTTTTGGCCGGCACTGCTTCACCCGCCTCGATGGCGGCCTTTCGTACCTGTTTCTTTTCCCTTCGCTTCTTACGGATTTCCTTCCGCTCCTCGCGTGCCTTGCTGGCCTGCTCCCAGGGTATCGTTTTCTTCCGGATCAACTTCTTCTTCCCCTTCCATTCGCCTGTTTCGGCGTACGTTTTCAGCTTCGCCTGAAATGACGCTTGCTTTTGCTTATCCTTGTACGCTAGCTTGAATACGTCCACCAACTGTTCTG ] [+] EMBL CNS08J4P [ CGTCTTCTTTATTCAGAGTCATCCAAACCATCCCCATCCTTGATGCCCATTTTATCGTCGTACTCCTCTTCGGTGATTTTTTTCCTTTTCACCTTTTTCAACAATCGAATATCGTTGGCCAGCTCCTCGAGGTCTTCCTGCGCCCCCTCCCCGTCCGTTTCTTTTTGGCCGGCACTGCTTCACCCGCCTCGATGGCGGCCTTTCGTACCTGTTTCTTTTCCCTTCGCTTCTTACGGATTTCCTTCCGCTCCTCGCGTGCCTTGCTGGCCTGCTCCCAGGGTATCGTTTTCTTCCGGATCAACTTCTTCTTCCCCCTCCATTCGCCTGTTTCGGCGTACGTTTTCAGCTTCGCCTGAAATGACGCTTGCTTTTGCTTATCCTTGTACGCTAGCTTGAATACGTCCACCAACTGTTCTGGTCCTTGGAACGTTTCCTTGAACTGTGGCTTCATCTCGGGCATGCGGGGCAACTGCAGCAGTTCGTAGCTGGTCGCTACCTTACCGAGATCGAGATCCTTCAATCGCAGGATTAAATTGCACTCGTGCTTACTGTACGCCTGCACGTGCGACACAAACGCTCGATTCGCTTGATCGAATGTGGCGCGATCCGTCTTTTGCAGCTGATGCAGTTTGCGTAACGTTTCCGCCAATCTTGCTTCGGGAATTTCCAGTTCCACCTCCTTGAGGGCAACCTTTTGATTGCGCGTCAGAAAGTCCACGTAAGCGTCCTCGGTCGGCAGCAGCATAATTAGCGCATTACCTTCCGATCCCTGGCGTGCTGTGCGGCCTACACGATGCACAAATGCGGCCGCACTGGACGGTGGATCCCACTGTAGTACCCAGTCCACCTCGGGAATGTCGACGCCACGGGCAAG ] [-] EMBL CNS08FWO [ CGGCCGCACTGGACGGTGGATCCCACTGTAGTACCCAGTCCACCTCGGGAATGTCGACGCCACGGGCAAGCACATCGGTACAGAGCAGCAGCGAACTGTCGGTTCGCGGAACGACTGCAGTATTCCGAAGCGTTGCGATTTCATTTTCCCGTGCAGCCCCAGTACTTGCATCGAGGGCACCAGAGCCGCCATAGCAACGGACCAATATTCAACGCAAGCGCACGTTGGTAAGAATAGCATCGCTTTCTTGATCTGTTGCGAGCTTATAAAGTCGAGCATAGCGACCATCTTCTGTTCCGGTTCGACGATCAGGTAGTAATTTTGCAGCAGCTTCGGCGTACTTGTGGTTGCCTTCATCGCGGACGCTCACCAGCA ] [-] EMBL CNS08J4O [ CTTCTGTTCCGGTGCGACGATCAGGTAGTAATTTTGCAGCAGCTTCGGCGTACTTGTGGTTGCCTTC TCGCGGACGCTCACCAGCACGGGATTGCGTAAACCGGCGCGCATTAAATCCTTCACCTCCTTGGTTTGCGTTGCCGAAAACAGTCCCGTACGGCGCTGGCGGGGCAGATATGCGAGGATCGTGTTGATTGTCGCCTCAAA CCCCATG TCGAGCAGGCGGTCCGCCTCGT CCAGTAC AAGCAGCTCCAGATTCTTGACCTTTGCAGCCAAATTTAGATCGCCTTTGCGTTCAAACAGATCCTGCAAGCGACCGGGTGTGGCAACGAGTATGTTGGCACCTTGCTTCAGGATCGACATCACGTCTTCCTCTACCGAGTTTCCTCCGATGAGCATTTTCTGCCGGAAGCACCTCAACTCATCGTGGGCCAGAAATTCGGACAGCACGTCGTGAA TCTGAGTGGCTAGTTCGCGCGTGGGCGAAACGATCACGGCCCCGATTTCATGCTTCTTCCATGCCTCACTTCGCTTCCGTGGGAGCAGCAGCTCCAGCAGGGGGACGAGGAATGCTAGCGTTTTTCCTGAACCCGTCACCGCCTCTGCTGCCACGTCTTTGTAGGACAAGAGCAGGGGAATGGTGGCTCCCTGCACCGGTGTCATCTTATCGAATCCGGG ] [-] EMBL BM595758 [ GCCTCAAACCCCCATGTTGGAGCAGGCGGTCCGCCTCGTCCCAGTACAAAGCAGCTCCAGATTCTTGACCTTTGCAGCCAAATTTAGATCGCCTTTGCGTTCAAACAGATCCTGCAAGCGACCGGGTGTGGCAACGAGAATGTTGGCACCTTGCTTCAGGATCGACATCACGTCTTCCTCTACCGAGTTTCCTCCGATGAGCATTTTCTGCCGGAAGCACCTCAACTCATCGTGGGCCAGAAATTCGGACAGCACGTCGTGAATTCTGAGTGGCTAGTTCGCGCGTGGGCGAAACGATCACGGCTCCGATTTCATGCTTCTTCCATGCCTCGCTTCGCTTCCGTTTGAGCAGCAGCTCCAGCAGTGGGACGAGGAATGCTAGCGTTTTTCCCGAACCCGTCACCGCCTCTGCTGCCACGTCTTTGTAGGACAAGAGCAGAGGAATGGTGGCACCCTGCACCGGTGTCATCTTATCGAACCCGAGCCTCTTTATCACCTCGAGCACTGGCGCACTTAGTGGGGTGGACAGCTCGGTCCATTTGCCGCTCGGTCGTGGCATCTTTACATGTGGAGCACTTTTTGAATGTTTGAGGACGGATTAAAAAATGTTGAAATTTCCCCCGTAAAATCACACAACACTCTGCGGCAGTTCCACCGG] consensusID : consensus_7036#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [TCGCCACGAGGTANAAATTCCTTTCACTTTTTCAACAATCGAATATCGTTGGCCAGCTCCTCGAGGTCTTCCTGCGAATATTTGGTCCGTTTCTTTTTGGCCGGCACTGCTTCACCCGCCTCGATGGCGGCCTTATCGTACCTGTTTCTTTTCCCTTCGCTTCTTACGGATTTCCTTCCGCTCCTCGCGTGCCTTGCTGGCCTGCTCCCAGGGAATCGTTTTCTTCCTGATCAACTTTTTCTTCCCCTTCCATTCGCCTGTTTCGGCGTACGTTTTTAGCTTTGCCTGAAATGACGCTTGCTTTTGCTTATCCTTGTACGCTAGCTTGAATACGTCCACCAACTGTTCTGGTCCTTGGAACGTTTCCCTGAACTGTGGCTTCATCTCGGGCATGCGGGGCAGCTGCAGCAGTCCGTAGCTGGTCGCTACCTTACCGAGATCGAGATCCTTCAATCGCAGGATTAAATTGCACTCGTGCTTACTGTACGCCTGNAACGTGCGACAGNGAAACGCTCGATTCGCTTGATCGAATGTGGNGCGATCCGNACTTTTGGCAGGCCTNATGCAGTGTGCGTAACGT] [+] EMBL BX466120 [TCGCCACGAGGTANAAATTCCTTTCACTTTTTCAACAATCGAATATCGTTGGCCAGCTCCTCGAGGTCTTCCTGCGAATATTTGGTCCGTTTCTTTTTGGCCGGCACTGCTTCACCCGCCTCGATGGCGGCCTTATCGTACCTGTTTCTTTTCCCTTCGCTTCTTACGGATTTCCTTCCGCTCCTCGCGTGCCTTGCTGGCCTGCTCCCAGGGAATCGTTTTCTTCCTGATCAACTTTTTCTTCCCCTTCCATTCGCCTGTTTCGGCGTACGTTTTTAGCTTTGCCTGAAATGACGCTTGCTTTTGCTTATCCTTGTACGCTAGCTTGAATACGTCCACCAACTGTTCTGGTCCTTGGAACGTTTCCCTGAACTGTGGCTTCATCTCGGGCATGCGGGGCAGCTGCAGCAGTCCGTAGCTGGTCGCTACCTTACCGAGATCGAGATCCTTCAATCGCAGGATTAAATTGCACTCGTGCTTACTGTACGCCTGNAACGTGCGACAGNGAAACGCTCGATTCGCTTGATCGAATGTGGNGCGATCCGNACTTTTGGCAGGCCTNATGCAGTGTGCGTAACGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7036#0 GCCCGTTTAAGCGTCTTCTTTATTCAGAGTCATCCAAACCATCCCCATCCTTGATGCCCA 60 consensus_7036#1 ------------------------------------------------------------ consensus_7036#0 TTTTATCGTCGTACTCCTCTTCGGTGATTTTTTTCCTTTTCACTTTTTTCAACAATCGAA 120 consensus_7036#1 ---------------TCGCCACGA-GGTANAAATTCCTTTCACTTTTT-CAACAATCGAA 43 * * ** * * * * *********** *********** consensus_7036#0 TATCGTTGGCCAGCTCCTCGAGGTCTTCCTGCGAATATTTGGTCCGTTTCTTTTTGGCCG 180 consensus_7036#1 TATCGTTGGCCAGCTCCTCGAGGTCTTCCTGCGAATATTTGGTCCGTTTCTTTTTGGCCG 103 ************************************************************ consensus_7036#0 GCACTGCTTCACCCGCCTCGATGGCGGCCTT-TCGTACCTGTTTCTTTTCCCTTCGCTTC 239 consensus_7036#1 GCACTGCTTCACCCGCCTCGATGGCGGCCTTATCGTACCTGTTTCTTTTCCCTTCGCTTC 163 ******************************* **************************** consensus_7036#0 TTACGGATTTCCTTCCGCTCCTCGCGTGCCTTGCTGGCCTGCTCCCAGGGTATCGTTTTC 299 consensus_7036#1 TTACGGATTTCCTTCCGCTCCTCGCGTGCCTTGCTGGCCTGCTCCCAGGGAATCGTTTTC 223 ************************************************** ********* consensus_7036#0 TTCCGGATCAACTTCTTCTTCCCCTTCCATTCGCCTGTTTCGGCGTACGTTTTCAGCTTC 359 consensus_7036#1 TTCCTGATCAACTTTTTCTTCCCCTTCCATTCGCCTGTTTCGGCGTACGTTTTTAGCTTT 283 **** ********* ************************************** ***** consensus_7036#0 GCCTGAAATGACGCTTGCTTTTGCTTATCCTTGTACGCTAGCTTGAATACGTCCACCAAC 419 consensus_7036#1 GCCTGAAATGACGCTTGCTTTTGCTTATCCTTGTACGCTAGCTTGAATACGTCCACCAAC 343 ************************************************************ consensus_7036#0 TGTTCTGGTCCTTGGAACGTTTCCTTGAACTGTGGCTTCATCTCGGGCATGCGGGGCAAC 479 consensus_7036#1 TGTTCTGGTCCTTGGAACGTTTCCCTGAACTGTGGCTTCATCTCGGGCATGCGGGGCAGC 403 ************************ ********************************* * consensus_7036#0 TGCAGCAGTTCGTAGCTGGTCGCTACCTTACCGAGATCGAGATCCTTCAATCGCAGGATT 539 consensus_7036#1 TGCAGCAGTCCGTAGCTGGTCGCTACCTTACCGAGATCGAGATCCTTCAATCGCAGGATT 463 ********* ************************************************** consensus_7036#0 AAATTGCACTCGTGCTTACTGTACGCCTGCA-CGTGCGACACA--AACGCTCGATTCGCT 596 consensus_7036#1 AAATTGCACTCGTGCTTACTGTACGCCTGNAACGTGCGACAGNGAAACGCTCGATTCGCT 523 ***************************** * ********* *************** consensus_7036#0 TGATCGAATGTGGCGCGATCCGTCTTTT--GCAG--CTGATGCAGTTTGCGTAACGTTTC 652 consensus_7036#1 TGATCGAATGTGGNGCGATCCGNACTTTTGGCAGGCCTNATGCAGTGTGCGTAACGT--- 580 ************* ******** *** **** ** ******* ********** consensus_7036#0 CGCCAATCTTGCTTCGGGAATTTCCAGTTCCACCTCCTTGAGGGCAACCTTTTGATTGCG 712 consensus_7036#1 ------------------------------------------------------------ consensus_7036#0 CGTCAGAAAGTCCACGTAAGCGTCCTCGGTCGGCAGCAGCATAATTAGCGCATTACCTTC 772 consensus_7036#1 ------------------------------------------------------------ consensus_7036#0 CGATCCCTGGCGTGCTGTGCGGCCTACACGATGCACAAATGCGGCCGCACTGGACGGTGG 832 consensus_7036#1 ------------------------------------------------------------ consensus_7036#0 ATCCCACTGTAGTACCCAGTCCACCTCGGGAATGTCGACGCCACGGGCAAGCACATCGGT 892 consensus_7036#1 ------------------------------------------------------------ consensus_7036#0 ACAGAGCAGCAGCGAACTGTCGGTTCGCGGAACGACTGCAGTATTCCGAAGCGTTGCGAT 952 consensus_7036#1 ------------------------------------------------------------ consensus_7036#0 TTCATTTTCCCGTGCAGCCCCAGTACTTGCATCGAGGGCACCAGAGCCGCCATAGCAACG 1012 consensus_7036#1 ------------------------------------------------------------ consensus_7036#0 GACCAATATTCAACGCAAGCGCACGTTGGTAAGAATAGCATCGCTTTCTTGATCTGTTGC 1072 consensus_7036#1 ------------------------------------------------------------ consensus_7036#0 GAGCTTATAAAGTCGAGCATAGCGACCATCTTCTGTTCCGGTTCGACGATCAGGTAGTAA 1132 consensus_7036#1 ------------------------------------------------------------ consensus_7036#0 TTTTGCAGCAGCTTCGGCGTACTTGTGGTTGCCTTCATCGCGGACGCTCACCAGCACGGG 1192 consensus_7036#1 ------------------------------------------------------------ consensus_7036#0 ATTGCGTAAACCGGCGCGCATTAAATCCTTCACCTCCTTGGTTTGCGTTGCCGAAAACAG 1252 consensus_7036#1 ------------------------------------------------------------ consensus_7036#0 TCCCGTACGGCGCTGGCGGGGCAGATATGCGAGGATCGTGTTGATTGTCGCCTCAAACCC 1312 consensus_7036#1 ------------------------------------------------------------ consensus_7036#0 CATGTCGAGCAGGCGGTCCGCCTCGTCCAGTACAAGCAGCTCCAGATTCTTGACCTTTGC 1372 consensus_7036#1 ------------------------------------------------------------ consensus_7036#0 AGCCAAATTTAGATCGCCTTTGCGTTCAAACAGATCCTGCAAGCGACCGGGTGTGGCAAC 1432 consensus_7036#1 ------------------------------------------------------------ consensus_7036#0 GAGTATGTTGGCACCTTGCTTCAGGATCGACATCACGTCTTCCTCTACCGAGTTTCCTCC 1492 consensus_7036#1 ------------------------------------------------------------ consensus_7036#0 GATGAGCATTTTCTGCCGGAAGCACCTCAACTCATCGTGGGCCAGAAATTCGGACAGCAC 1552 consensus_7036#1 ------------------------------------------------------------ consensus_7036#0 GTCGTGAATCTGAGTGGCTAGTTCGCGCGTGGGCGAAACGATCACGGCCCCGATTTCATG 1612 consensus_7036#1 ------------------------------------------------------------ consensus_7036#0 CTTCTTCCATGCCTCACTTCGCTTCCGTGGGAGCAGCAGCTCCAGCAGGGGGACGAGGAA 1672 consensus_7036#1 ------------------------------------------------------------ consensus_7036#0 TGCTAGCGTTTTTCCTGAACCCGTCACCGCCTCTGCTGCCACGTCTTTGTAGGACAAGAG 1732 consensus_7036#1 ------------------------------------------------------------ consensus_7036#0 CAGGGGAATGGTGGCTCCCTGCACCGGTGTCATCTTATCGAATCCGGGCCTCTTTATCAC 1792 consensus_7036#1 ------------------------------------------------------------ consensus_7036#0 CTCGAGCACTGGCGCACTTAGTGGGGTGGACAGCTCGGTCCATTTGCCGCTCGGTCGTGG 1852 consensus_7036#1 ------------------------------------------------------------ consensus_7036#0 CATCTTTACATGTGGAGCACTTTTTGAATGTTTGAGGACGGATTAAAAAATGTTGAAATT 1912 consensus_7036#1 ------------------------------------------------------------ consensus_7036#0 TCCCCCGTAAAATCACACAACACTCTGCGGCAGTTCCACCGG 1954 consensus_7036#1 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||