These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_704#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [CCGCCCACGCGTCCGGTTGCGCCGAGTGGTCCGCTGGTGCGCCCGCAATCTTTTTGCCAGGGTTTACACTGTGTGTGTGTTTGTGTTTGTTTGTGTGTTCCGTTTAGTGTAGTAGTATGGTTACAGCGCATTTCGTCTACCGATGATTTGCAAAAGATTATCACCTATTGCTGCCAGCTATCGGGCCGTATTTTTGGATGGTGGAGTTGATAAGAACATCGCACGCAACCACTGCATCAACAGCAACAAAAGTGTGCTGCCATTGTTTTACATTCGTCGTGAACTATGTTTTTCTTCTGTGTGTGTTTCACCAGCTGTCAAAGTCGCACGTAAACAAACGGCACAGCGAGACTACTGCCAACTGGTACAACCGGCAAGTGGCAACGAAAAGCCGGCAAATATGAGCGAATTCAACACAATTGCACGTCCTTCGGCGCACGGACAACTGTTGGACAATAAAACCCTGTTTCCCGATCCACCTGCACGTGGCCCACTGACCCGGTACCGGAAGCAAGCTTCCATCGATTGGCGCAAACTCAAGCTTTCCTTTCACGATGAACCGTCCCTCAAGCTGCAGCACCGGGTGTGGGAGTTTGCCAGCAAGCACCCACTGTTCGCGCATCCGACCGGCACGCTAACGATGGACGAGGAACGCCACCTAGCCACCAAGCGCATGTACGTGGTACAGAA] [+] EMBL BM619395 [CCGCCCACGCGTCCGGTTGCGCCGAGTGGTCCGCTGGTGCGCCCGCAATCTTTTTGCCAGGGTTTACACTGTGTGTGTGTTTGTGTTTGTTTGTGTGTTCCGTTTAGTGTAGTAGTATGGTTACAGCGCATTTCGTCTACCGATGATTTGCAAAAGATTATCACCTATTGCTGCCAGCTATCGGGCCGTATTTTTGGATGGTGGAGTTGATAAGAACATCGCACGCAACCACTGCATCAACAGCAACAAAAGTGTGCTGCCATTGTTTTACATTCGTCGTGAACTATGTTTTTCTTCTGTGTGTGTTTCACCAGCTGTCAAAGTCGCACGTAAACAAACGGCACAGCGAGACTACTGCCAACTGGTACAACCGGCAAGTGGCAACGAAAAGCCGGCAAATATGAGCGAATTCAACACAATTGCACGTCCTTCGGCGCACGGACAACTGTTGGACAATAAAACCCTGTTTCCCGATCCACCTGCACGTGGCCCACTGACCCGGTACCGGAAGCAAGCTTCCATCGATTGGCGCAAACTCAAGCTTTCCTTTCACGATGAACCGTCCCTCAAGCTGCAGCACCGGGTGTGGGAGTTTGCCAGCAAGCACCCACTGTTCGCGCATCCGACCGGCACGCTAACGATGGACGAGGAACGCCACCTAGCCACCAAGCGCATGTACGTGGTACAGAA] consensusID : consensus_704#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [CCGTGCGTAGCGAGGTTGTTGCGCCGAGTGGTCCGCTGGTGCGCCCGCAATCTTTTTGCCAGGGTTTACACTGTGTGTGTTTGTGTTTGTTTGTGTGTTCCGTTTAGTGTAGTAGTATGGTTACAGCGCATTTCGTCTACCGATGATTTGCAAAAGATTATCACCTATTGCTGCCAGCTATCGGGCCGTATTTTTGGATGGTGGGGTTGATAAGAGCATCGCACGCAACCACTGCATCAACAGCAACAAAAGTGTGCTGCCATTGTTTTACATTCGTCGTGAACTATGTTTTTCTTCTGTGTGTGTTTCACCAGCTGTCAAAGTTGCACGTAAACAAACGCCACAGCGAGACTACTGCCAACTGGTACAACCGGCAAGTGGCAACGAAAAGCCGGCAAATATGAGCGAATTCAACACGATTGCACGTCCTTCGGCGCAGGGACAACTGTTGGACAATAAAACCCTCTTTCCCGATCCACCTGCACGTGGCCCACTGACCCGGTACCGGAAGCAAGCTTCCATCGATTGGCGCAAACTCAAGCTTTCCTTTCACGATGAACCGTCCCTCAACCTGCAGCACCGGGTGTGGGAGTTTGCCAGCAAGCACCCACTGTTCGCCCATCCGACCGGCACGCTAACGATGGGACGAGGAACGCCACCTAGCCACCAAGCGCATGTACG] [+] EMBL BM652168 [CCGTGCGTAGCGAGGTTGTTGCGCCGAGTGGTCCGCTGGTGCGCCCGCAATCTTTTTGCCAGGGTTTACACTGTGTGTGTTTGTGTTTGTTTGTGTGTTCCGTTTAGTGTAGTAGTATGGTTACAGCGCATTTCGTCTACCGATGATTTGCAAAAGATTATCACCTATTGCTGCCAGCTATCGGGCCGTATTTTTGGATGGTGGGGTTGATAAGAGCATCGCACGCAACCACTGCATCAACAGCAACAAAAGTGTGCTGCCATTGTTTTACATTCGTCGTGAACTATGTTTTTCTTCTGTGTGTGTTTCACCAGCTGTCAAAGTTGCACGTAAACAAACGCCACAGCGAGACTACTGCCAACTGGTACAACCGGCAAGTGGCAACGAAAAGCCGGCAAATATGAGCGAATTCAACACGATTGCACGTCCTTCGGCGCAGGGACAACTGTTGGACAATAAAACCCTCTTTCCCGATCCACCTGCACGTGGCCCACTGACCCGGTACCGGAAGCAAGCTTCCATCGATTGGCGCAAACTCAAGCTTTCCTTTCACGATGAACCGTCCCTCAACCTGCAGCACCGGGTGTGGGAGTTTGCCAGCAAGCACCCACTGTTCGCCCATCCGACCGGCACGCTAACGATGGGACGAGGAACGCCACCTAGCCACCAAGCGCATGTACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_704#0 CCGCCCAC-GCGTC-CGGTTGCGCCGAGTGGTCCGCTGGTGCGCCCGCAATCTTTTTGCC 58 consensus_704#1 CCGTGCGTAGCGAGGTTGTTGCGCCGAGTGGTCCGCTGGTGCGCCCGCAATCTTTTTGCC 60 *** * *** ******************************************* consensus_704#0 AGGGTTTACACTGTGTGTGTGTTTGTGTTTGTTTGTGTGTTCCGTTTAGTGTAGTAGTAT 118 consensus_704#1 AGGGTTTACACTGTGTGTGT--TTGTGTTTGTTTGTGTGTTCCGTTTAGTGTAGTAGTAT 118 ******************** ************************************** consensus_704#0 GGTTACAGCGCATTTCGTCTACCGATGATTTGCAAAAGATTATCACCTATTGCTGCCAGC 178 consensus_704#1 GGTTACAGCGCATTTCGTCTACCGATGATTTGCAAAAGATTATCACCTATTGCTGCCAGC 178 ************************************************************ consensus_704#0 TATCGGGCCGTATTTTTGGATGGTGGAGTTGATAAGAACATCGCACGCAACCACTGCATC 238 consensus_704#1 TATCGGGCCGTATTTTTGGATGGTGGGGTTGATAAGAGCATCGCACGCAACCACTGCATC 238 ************************** ********** ********************** consensus_704#0 AACAGCAACAAAAGTGTGCTGCCATTGTTTTACATTCGTCGTGAACTATGTTTTTCTTCT 298 consensus_704#1 AACAGCAACAAAAGTGTGCTGCCATTGTTTTACATTCGTCGTGAACTATGTTTTTCTTCT 298 ************************************************************ consensus_704#0 GTGTGTGTTTCACCAGCTGTCAAAGTCGCACGTAAACAAACGGCACAGCGAGACTACTGC 358 consensus_704#1 GTGTGTGTTTCACCAGCTGTCAAAGTTGCACGTAAACAAACGCCACAGCGAGACTACTGC 358 ************************** *************** ***************** consensus_704#0 CAACTGGTACAACCGGCAAGTGGCAACGAAAAGCCGGCAAATATGAGCGAATTCAACACA 418 consensus_704#1 CAACTGGTACAACCGGCAAGTGGCAACGAAAAGCCGGCAAATATGAGCGAATTCAACACG 418 *********************************************************** consensus_704#0 ATTGCACGTCCTTCGGCGCACGGACAACTGTTGGACAATAAAACCCTGTTTCCCGATCCA 478 consensus_704#1 ATTGCACGTCCTTCGGCGCAGGGACAACTGTTGGACAATAAAACCCTCTTTCCCGATCCA 478 ******************** ************************** ************ consensus_704#0 CCTGCACGTGGCCCACTGACCCGGTACCGGAAGCAAGCTTCCATCGATTGGCGCAAACTC 538 consensus_704#1 CCTGCACGTGGCCCACTGACCCGGTACCGGAAGCAAGCTTCCATCGATTGGCGCAAACTC 538 ************************************************************ consensus_704#0 AAGCTTTCCTTTCACGATGAACCGTCCCTCAAGCTGCAGCACCGGGTGTGGGAGTTTGCC 598 consensus_704#1 AAGCTTTCCTTTCACGATGAACCGTCCCTCAACCTGCAGCACCGGGTGTGGGAGTTTGCC 598 ******************************** *************************** consensus_704#0 AGCAAGCACCCACTGTTCGCGCATCCGACCGGCACGCTAACGATGG-ACGAGGAACGCCA 657 consensus_704#1 AGCAAGCACCCACTGTTCGCCCATCCGACCGGCACGCTAACGATGGGACGAGGAACGCCA 658 ******************** ************************* ************* consensus_704#0 CCTAGCCACCAAGCGCATGTACGTGGTACAGAA 690 consensus_704#1 CCTAGCCACCAAGCGCATGTACG---------- 681 *********************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||