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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7043#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1056 fasta sequence
[CCGAGAAACTTGTTTTGCTACAGTGCTCTTTAACAATAGTTTTGTAAGACATTTGTTTTGCATAAAATCGATATTGCTATTGTGCATACGATGGAAGAGGATTTGATGGAATACGCCCCAAACATTCCGGATAATGTATTGGAGCTAATATTTTCCTTTCTGAAGCTGCAGGATCTACGTAACTGTACATTAGTTTGCAAAAGCTGGTACCGATTCTTTTGCGATGAAAACAATGAAGTTTGGCGCGCACAATGTTTGCAAAAAGTTCCTGCAGAGGCTTTTAAAAACGATCTTTTGACTGTTGTGCCGACGTACAAAGCTAAACTGCGAGCATATTTCCACGCCTGGAATCCGTTTGATTGTAGTCGCCACGTATATATCAAGCCAAATGGGTTTACTCTTCACAGGTGTGAAATGCATTACGACGAGAAGAATTATGAACTTCTCTAAATCGAAAACATGTATTTTGTCTTCCTTTACTAAGAAACCCTGTGGCAC-AAAGTACGGACGGTTCCAGAGGGAAAATTGGATTTAAACATGGCAGGCAT-GCCTGGGAAGTAC-GGTGGGAAGGTCCACTTGGAACGGTAGCAG-TTGTAGGAATTGCTACCAAGGATGCCGCTATTCAATGTCATGGATATTATGCTTTACTCGGTGCCGACGATCAAAGTTGGGGATGGAATCTGGTAGATAATTTGCTACTTCACAACGGAGACGCCCATGGTATATACCCTCTTCTGAATAATGCCCCTAAATATAAGGTTGGAGAAAGAATACGTGTAATACTGGATTGTGACGAAAATACTTTGTCTTTTGAGAAAAACTATGAATTTCTTGGAGTTGCATTTACAGATTTACCAGAAAAAAATTTCTATCCGACTGTTGCTGCGGTGTATGGAAATACGGAAATTTCAATGGTATATTTAGGCGCTCCATTAGATGGATAAATGGGCTTTCAACGACAGATTCACAGCGCACTGTTTTGGAAACTTCAGTGCGAATATTTATTGAATACCGCTTTAGTATTATTATTGTAACTAGTCAAATAACTTTTTGGAA]
[+] EMBL BM578466 [CCGAGAAACTTGTTTTGCTACAGTGCTCTTTAACAATAGTTTTGTAAGACATTTGTTTTGCATAAAATCGATATTGCTATTGTGCATACGATGGAAGAGGATTTGATGGAATACGCCCCAAACATTCCGGATAATGTATTGGAGCTAATATTTTCCTTTCTGAAGCTGCAGGATCTACGTAACTGTACATTAGTTTGCAAAAGCTGGTACCGATTCTTTTGCGATGAAAACAATGAAGTTTGGCGCGCACAATGTTTGCAAAAAGTTCCTGCAGAGGCTTTTAAAAACGATCTTTTGACTGTTGTGCCGACGTACAAAGCTAAACTGCGAGCATATTTCCACGCCTGGAATCCGTTTGATTGTAGTCGCCACGTATATATCAAGCCAAATGGGTTTACTCTTCACAGGTGTGAAATGCATTACGACGAGAAGAATTATGAACTTCTCTAAATCGAAAACATGTATTTTGTCTTCCTTTACGAAGAAACCCTGTGGCACAAAAGTACGGACGGTTCCAGAGGGAAAATTGGATTTAAACATGGCAGGCATGGCCTGGGAAGACCGGGTGGGAAGGTCCACTTGGAACGGTAGCAGATTGTAGGAATTGCTACCAAGGATGCCGCTATTCAATGTCATGGATAT ]
[+] EMBL BX612057 [ GTGCCGACGTACAAAGCTAAACTGCGAGCATATTTCCACGCCTGGAATCCGTTTGATTGTAGTCGCCACGTATATATCAAGCCAAATGGGTTTACTCTTCACAGGTGTGAAATGCATTACGACGAGAAGAATTATGAACTTCTCTAAATCGAAAACATGTATTTTGTCTTCCTTTACTAAGAAACCCTGTGGCAC AAAGTACGGACGGTTCCAGAGGGAAAATTGGATTTAAACATGGCAGGCAT GCCTGGGAAGTAC GGTGGGAAGGTCCACTTGGAACGGTAGCAG TTGTAGGAATTGCTACCAAGGATGCCGCTATTCAATGTCATGGATATTATGCTTTACTCGGTGCCGACGATCAAAGTTGGGGATGGAATCTGGTAGATAATTTGCTACTTCACAACGGAGACGCCCATGGTATATACCCTCTTCTGAATAATGCCCCTAAATATAAGGTTGGAGAAAGAATACGTGTAATACTGGATTGTGACGAAAATACTTTGTCTTTTGAGAAAAACTATGAATTTCTTGGAGTTGCATTTACAGATTTACCAGAAAAAAATTTCTATCCGACTGTTGCTGCGGTGTATGGAAATACGGAAATTTCAATGGTATATTTAGGCGCTCCATTAGATGGATAAATGGGCTTTCAACGACAGATTCACAGCGCACTGTTTTGGAAACTTCAGTGCGAATATTTATTGAATACCGCTTTAGTATTATTATTGTAACTAGTCAAATAACTTTTTGGAA]
[+] EMBL BX611848 [ CCGACGTACAAAGCTAAACTGCGAGCATATTTCCACGCCTGGAATCCGTTTGATTGTAGTCGCCACGTATATATCAAGCCAAATGGGTTTACTCTTCACAGGTGTGAAATGCATTACGACGAGAAGAATTATGAACTTCTCTAAATCGAAAACATGTATTTTGTCTTCCTTTACTAAGAAACCCTGTGGCAC AAAGTACGGACGGTTCCAGAGGGAAAATTGGATTTAAACATGGCAGGCAT GCCTGGGAAGTAC GGTGGGAAGGTCCACTTGGAACGGTAGCAG TTGTAGGAATTGCTACCAAGGATGCCGCTATTCAATGTCATGGATATTATGCTTTACTCGGTGCCGACGATCAAAGTTGGGGATGGAATCTGGTAGATAATTTGCTACTTCACAACGGAGACGCCCATGGTATATACCCTCTTCTGAATAATGCCCCTAAATATAAGGTTGGAGAAAGAATACGTGTAATACTGGATTGTGACGAAAATACTTTGTCTTTTGAGAAAAACTATGAATTTCTTGGAGTTGCATTTACAGATTTACCAGAAAAAAATTTCTATCCGACTGTTGCTGCGGTGTATGGAAATACGGAAATTTCAATGGTATATTTAGGCGCTCCATTAGATGGATAAATG ]
consensusID : consensus_7043#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 701 fasta sequence
[CCAGCAGATTGCCACGAGGTTNCAATGGGTTTACTCTTCACAGAAACCTGTGGCACAAAGTACGGACGGTTCCAGAGGGAAAATTGGATTTAAACATGGCAGGCATGCCTGGGAAGTACGGTGGGAAGTGTCCACTTGGAACGGTAGCAGTTGTAGGAATTGCTACCAAGGATGCCGCTATTCAATGTCATGGATATTATGCTTTACTCGATGCCGACGATCAAAGTTGGCGCGACTGGAATCTGGCTAGCATAACTTTGCTACTTCACAACGGCAGACGCCCATGGTATTATACCCTACTTCTGGAATAATGCCCCTAAATATAACGGTTTGGACGAACACGAACTACGTGTACATACTTGGANTGGCTTGAACCCGCCACACACACTTACCCTCTTCGCCTCCCCTNCTACCCNTGGCACCGCAACANCACACAACCCTTAACTTGNACCACCTACTCTCCCCTCCTGCGCACAGCCTCTGCCCACCCTTTCCAACCACCGCAACCTCTTAACCCCCACACCAACAGCCAACACNCAACACTTNCTCCCCCTAAANTCCTCCCGCACCCCTGGGCTCTGCCCCCTTGCGCCGACGCCATGTCTACACTGTCGCACCACCACACCTTACCCGCGCACAACAACCTCCTTCATCCACAACCANGCGGCCTACCTAACCTCTCCNAACANCCGCACCGAGCC]
[+] EMBL AL930632 [CCAGCAGATTGCCACGAGGTTNCAATGGGTTTACTCTTCACAGAAACCTGTGGCACAAAGTACGGACGGTTCCAGAGGGAAAATTGGATTTAAACATGGCAGGCATGCCTGGGAAGTACGGTGGGAAGTGTCCACTTGGAACGGTAGCAGTTGTAGGAATTGCTACCAAGGATGCCGCTATTCAATGTCATGGATATTATGCTTTACTCGATGCCGACGATCAAAGTTGGCGCGACTGGAATCTGGCTAGCATAACTTTGCTACTTCACAACGGCAGACGCCCATGGTATTATACCCTACTTCTGGAATAATGCCCCTAAATATAACGGTTTGGACGAACACGAACTACGTGTACATACTTGGANTGGCTTGAACCCGCCACACACACTTACCCTCTTCGCCTCCCCTNCTACCCNTGGCACCGCAACANCACACAACCCTTAACTTGNACCACCTACTCTCCCCTCCTGCGCACAGCCTCTGCCCACCCTTTCCAACCACCGCAACCTCTTAACCCCCACACCAACAGCCAACACNCAACACTTNCTCCCCCTAAANTCCTCCCGCACCCCTGGGCTCTGCCCCCTTGCGCCGACGCCATGTCTACACTGTCGCACCACCACACCTTACCCGCGCACAACAACCTCCTTCATCCACAACCANGCGGCCTACCTAACCTCTCCNAACANCCGCACCGAGCC]
consensusID : consensus_7043#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 557 fasta sequence
[AAGCTAGCTCAATCGTCCGCTTTGAACTTACTTGATCCAGTACAAGAAACTTGTTTTGCTACAGTGCTCTTTAACAATAGTTTTGTAAGACATTTGTGTTGCATAAAATCGATATTGCTATTGTGCATACGATGGAAGAGGATTTGATGGAATACGCCCCAAACATTCCGGATAATGTATTGGAGCTAATATTTTACTTTCTGAAGCTGCAGGATCTACGTAACTGTACATTAGTTTGCAAAAGCTGGTACCGATTCTTTTGCGATGAAAACAATGAAGTTTGGCGCGCACAATGTTTGCAAAAAGTTCCTGCAGAGGCTTTTAAAAACGATCTTTTGACTGTTGTGCCGACGTACAAAGCTAAACTGCGAGCATATTTCCACGCCTGGAATCCGTTTGATTGTAGTCGCCACGTATATATCAAGCCAAATGGGTTTACTCTTCACAGAAACCCTGTGGCACAAAGTACGGACGGTTCCAGAGGGAAAATTGGATTTAAACATGGCAGGCATGCATGGGAAGTACGGTGGGAAGGTCCACTTGGAACGGTAGCAGTT]
[+] EMBL CNS08TSG [AAGCTAGCTCAATCGTCCGCTTTGAACTTACTTGATCCAGTACAAGAAACTTGTTTTGCTACAGTGCTCTTTAACAATAGTTTTGTAAGACATTTGTGTTGCATAAAATCGATATTGCTATTGTGCATACGATGGAAGAGGATTTGATGGAATACGCCCCAAACATTCCGGATAATGTATTGGAGCTAATATTTTACTTTCTGAAGCTGCAGGATCTACGTAACTGTACATTAGTTTGCAAAAGCTGGTACCGATTCTTTTGCGATGAAAACAATGAAGTTTGGCGCGCACAATGTTTGCAAAAAGTTCCTGCAGAGGCTTTTAAAAACGATCTTTTGACTGTTGTGCCGACGTACAAAGCTAAACTGCGAGCATATTTCCACGCCTGGAATCCGTTTGATTGTAGTCGCCACGTATATATCAAGCCAAATGGGTTTACTCTTCACAGAAACCCTGTGGCACAAAGTACGGACGGTTCCAGAGGGAAAATTGGATTTAAACATGGCAGGCATGCATGGGAAGTACGGTGGGAAGGT ]
[+] EMBL BX604353 [ CGCTTTGAACTTACTTGATCCAGTACAAGAAACTTGTTTTGCTACAGTGCTCTTTAACAATAGTTTTGTAAGACATTTGTGTTGCATAAAATCGATATTGCTATTGTGCATACGATGGAAGAGGATTTGATGGAATACGCCCCAAACATTCCGGATAATGTATTGGAGCTAATATTTTCCTTTCTGAAGCTGCAGGATCTACGTAACTGTACATTAGTTTGCAAAAGCTGGTACCGATTCTTTTGCGATGAAAACAATGAAGTTTGGCGCGCACAATGTTTGCAAAAAGTTCCTGCAGAGGCTTTTAAAAACGATCTTTTGACTGTTGTGCCGACGTACAAAGCTAAACTGCGAGCATATTTCCACGCCTGGAATCCGTTTGATTGTAGTCGCCACGTATATATCAAGCCAAATGGGTTTACTCTTCACAGAAACCCTGTGGCACAAAGTACGGACGGTTCCAGAGGGAAAATTGGATTTAAACATGGCAGGCATGCCTGGGAAGTACGGTGGGAAGGTCCACTTGGAACGGTAGCAGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7043#0 ------------------------------------------CCGAGAAACTTGTTTTGC 18
consensus_7043#2 AAGCTAGCTCAATCGTCCGCT-TTGAACTTACTTGATCCAGTACAAGAAACTTGTTTTGC 59
consensus_7043#1 ---CCAGCAGATTGCCACGAGGTTNCAATGGGTTTACTCTTCAC-AGAAACCTGTGGCAC 56
* ****** *** *
consensus_7043#0 ----TACAGT--GCTCTTTAACAATAGTT---TTGTAAGACATTTGTTTTGCATAAAATC 69
consensus_7043#2 ----TACAGT--GCTCTTTAACAATAGTT---TTGTAAGACATTTGTGTTGCATAAAATC 110
consensus_7043#1 AAAGTACGGACGGTTCCAGAGGGAAAATTGGATTTAAACATGGCAGGCATGCCTGGGAAG 116
*** * * ** * * * ** ** ** * * *** * *
consensus_7043#0 GATATTGCTAT-TGTGCATACGATGGAAGAGGATTTGATGGAATACGCCCCAAACATTCC 128
consensus_7043#2 GATATTGCTAT-TGTGCATACGATGGAAGAGGATTTGATGGAATACGCCCCAAACATTCC 169
consensus_7043#1 TACGGTGGGAAGTGTCCACTTGGAACGGTAGCAGTTGTAGGAATTGCTACCAAGGATGCC 176
* ** * *** ** * ** * *** ***** **** ** **
consensus_7043#0 GGA---TAATGTATTGGAGCTAATATTTTCCTTTCTGAAGCTG--CAGGATCTACGTAAC 183
consensus_7043#2 GGA---TAATGTATTGGAGCTAATATTTTACTTTCTGAAGCTG--CAGGATCTACGTAAC 224
consensus_7043#1 GCTATTCAATGTCATGGATATTATGCTTTACTCGATGCCGACGATCAAAGTTGGCGCGAC 236
* ***** **** * ** *** ** ** * * ** * ** **
consensus_7043#0 TGTACATTAGTTTGCAAAA----GCTGGTACCGATTCTTTTGCGATGAAAACAATGAAGT 239
consensus_7043#2 TGTACATTAGTTTGCAAAA----GCTGGTACCGATTCTTTTGCGATGAAAACAATGAAGT 280
consensus_7043#1 TGGAATCTGGCTAGCATAACTTTGCTACTTCACAACGGCAGACGCCCATGGTATTATACC 296
** * * * * *** ** *** * * * ** * * * *
consensus_7043#0 TTGGCGC--GCACAATGTTTGCAAAAAGTTCCTGCAGAGGCTTTTAAAAACGATCTTTTG 297
consensus_7043#2 TTGGCGC--GCACAATGTTTGCAAAAAGTTCCTGCAGAGGCTTTTAAAAACGATCTTTTG 338
consensus_7043#1 CTACTTCTGGAATAATGCCC-CTAAATATAACGGTTTGGACGAACACGAACTACGTGTAC 355
* * * * **** * *** * * * * * * *** * * *
consensus_7043#0 ACTGTTGTGCCGACGTACAAA-GCTAAAC-TGCGAGCATATTTC--CACGCCTGGAATCC 353
consensus_7043#2 ACTGTTGTGCCGACGTACAAA-GCTAAAC-TGCGAGCATATTTC--CACGCCTGGAATCC 394
consensus_7043#1 ATACTTGGANTGGCTTGAACCCGCCACACACACTTACCCTCTTCGCCTCCCCTNCTACCC 415
* *** * * * * ** * ** * * *** * * *** * **
consensus_7043#0 GTTTGATTGTAGTCGCCACGTATATATCAAGCCAAATGGGTTTACTCTTCACAGGTGTGA 413
consensus_7043#2 GTTTGATTGTAGTCGCCACGTATATATCAAGCCAAATGGGTTTACTCTTCACAG------ 448
consensus_7043#1 NTGGCACCGCAA-CANCACACAACCCTTAACTTGNACCA-CCTACTCTCCCCTCCTGCGC 473
* * * * * *** * * ** * ****** * *
consensus_7043#0 AATGCATTACGACGAGAAGAATTATGAACTTCTCTAAATCGAAAACATGTATTTTGTCTT 473
consensus_7043#2 ------------------------------------------------------------
consensus_7043#1 ACAGCCTCTGCCCACCCTTTCCAACCACCGCAACCTCTTAACCCCCACACCAACAGCCAA 533
consensus_7043#0 CCTTTACTAAGAAACCCTGTGGCACAAAGTACGGACGGTTCCAGAGGGAAAATTGGATTT 533
consensus_7043#2 -----------AAACCCTGTGGCACAAAGTACGGACGGTTCCAGAGGGAAAATTGGATTT 497
consensus_7043#1 CACNCA-----ACACTTNCTCCCCCTAAANTCCTCCCGCACCCCTGGGC--TCTGCCCCC 586
* ** * * * ** * * * ** *** **
consensus_7043#0 AAACATGGCAGGCATGCCTGGGAAGT-ACGGTGGGAAGGTCCACTTG-GAACGGTAGCAG 591
consensus_7043#2 AAACATGGCAGGCATGCATGGGAAGT-ACGGTGGGAAGGTCCACTTG-GAACGGTAGCAG 555
consensus_7043#1 TTGCGCCGACGCCATGTCTACACTGTCGCACCACCACACCTTACCCGCGCACAACAACCT 646
* * * **** * ** * * ** * * ** * *
consensus_7043#0 TTGTAGGAATTGCTACCAAGGATGCCGCTATTCAATGTCATGGATATTATGCTTTACTCG 651
consensus_7043#2 TT---------------------------------------------------------- 557
consensus_7043#1 CCTTCATCCACAACCANGCGGCCTACCTAACCTCTCCNAACANCCGCACCGAGCC----- 701
consensus_7043#0 GTGCCGACGATCAAAGTTGGGGATGGAATCTGGTAGATAATTTGCTACTTCACAACGGAG 711
consensus_7043#2 ------------------------------------------------------------
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 ACGCCCATGGTATATACCCTCTTCTGAATAATGCCCCTAAATATAAGGTTGGAGAAAGAA 771
consensus_7043#2 ------------------------------------------------------------
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 TACGTGTAATACTGGATTGTGACGAAAATACTTTGTCTTTTGAGAAAAACTATGAATTTC 831
consensus_7043#2 ------------------------------------------------------------
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 TTGGAGTTGCATTTACAGATTTACCAGAAAAAAATTTCTATCCGACTGTTGCTGCGGTGT 891
consensus_7043#2 ------------------------------------------------------------
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 ATGGAAATACGGAAATTTCAATGGTATATTTAGGCGCTCCATTAGATGGATAAATGGGCT 951
consensus_7043#2 ------------------------------------------------------------
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 TTCAACGACAGATTCACAGCGCACTGTTTTGGAAACTTCAGTGCGAATATTTATTGAATA 1011
consensus_7043#2 ------------------------------------------------------------
consensus_7043#1 ------------------------------------------------------------
consensus_7043#0 CCGCTTTAGTATTATTATTGTAACTAGTCAAATAACTTTTTGGAA 1056
consensus_7043#2 ---------------------------------------------
consensus_7043#1 ---------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||