cluster # 7046

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Anopheles gambiae
cluster # 7046 cluster # 7046 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7046#0 length = 1216 sequences # 5

consensus_7046#1 length = 478 sequences # 1

consensusID : consensus_7046#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1216
fasta sequence

                              [CCGCTTCATCAGTGGCAACATCTTCCTCGCTCCGATCCTGCGTGCCGTTCTACCGCGTTCTTCCTCCACCGCCAAGGGCAAGACCGAGGCAGCTCCAGCCGGTGCTCCCGCCGCCACTGCGGAAGTGAAGAAAGACAACTAAACACACACACACACACCATTAAACCTAGCACTAACGTACTCTAGCGCGCCGTTTTTTTTTTTTGCGCGACCGTGACGCGAGATCTCGTTTTTAAGAAAGCGAAAATAGGCGGCCTCTGCTCCAACACACAAACACACAGAGAGACACCACACAAATGCAAAGCCTCCACCACAACATTGTTTTTTTTCTCCAATTTTATATGTAAAAACAAAATCAGATGCAAATACGCTAGAACGCGCGCGCAACGAAAAGTAATGCTCCAAGCGGCCGGACCTCTTAACAAACACACACAAGTATATTCGAAGCCATCCCTGTTTCTTCTTGCACGTTGAAATACGCATAGTTTATCGACACAAACACACACACTCACACACGCGGCTAGCCTATTAACTATACTTATAGAAATGCGCTCATACACTGTGTTGCTTATCGAGATCGAGACCGAGAAGTGCGGACGAAGAAGACAACAACGATGATGATGAAGATCATCGCACGGGGCGCCGCGATAAAGACAAATTTTGCACCCACCCCTCCGGGGGAGTTACTGCTTTAATGCTCCTCCTCTAAAAACTATACTCCTCCTCCTAGCTATCCTTATCTAATAACACTTATTCTGCCTCGTTATCATCTTCCAGCGTTTAAAGAAAGCGAAACCCTTCGGTGTGAGCGAATATTTACCCAAAATATTGTTGGTGTACTCCAGAGAGCGAACTCACGCTATATTTACCCACTGTTTTCCGACCTATTCAAGCTCGCGT-TCAAGCCCACAAAGCTCACCGAAGAAGAATAGCGGGACAGGAGAGAAAGCAGTAGCGCACCAAACCCGTCTTACAAATTCTTAAAGTTGATGAGCTTTTTTTAACAAAA-AAAACTGCGATTAATAG--ACACACACATCCGGCCGAGGGGATGTTAGAGGAGAACACGTCGTTCGAGATTTGGGGAGAGAGGGGAAAAGGGAGTTAATTTTAGAATCCACGATACCCTTAGAATAAAGCAGTACTAGTCATATTCTTCAATTCGAGAGACATGATACAAGTTAAAAAAGAGAAAATTAAAACGAAACAAATTAAACCA]

[+] EMBL BM634540             [CCGCTTCATCAGTGGCAACATCTTCCTCGCTCCGATCCTGCGTGCCGTTCTACCGCGTTCTTCCTCCACCGCCAAGGGCAAGACCGAGGCAGCTCCAGCCGGTGCTCCCGCCGCCACTGCGGAAGTGAAGAAAGACAACTAAACACACACACACACACCATTAAACCTAGCACTAACGTACTCTAGCGCGCCGTTTTTTTTTTTTGCGCGACCGTGACGCGAGATCTCGTTTTTAAGAAAGCGAAAATAGGCGGCCTCTGCTCCAACACACAAACACACAGAGAGACACCACACAAATGCAAAGCCTCCACCACAACATTGTTTTTTTTCTCCAATTTTATATGTAAAAACAAAATCAGATGCAAATACGCTAGAACGCGCGCGCAACGAAAAGTAATGCTCCAAGCGGCCGGACCTCTTAACAAACACACACAAGTATATTCGAAGCCATCCCTGTTTCTTCTTGCACGTTGAAATACGCATAGTTTATCGACACAAACACACACACTCACACACGCGGCTAGCCTATTAACTATACTTATAGAAATGCGCTCATACACTGTGTTGCTTATCGAGATCGAGACCGAGAAGTGCGGCCGAAGAAGACAACAACGATGATGATGAAGATCATCGCACGGGGCGCCGCGATAAAGACAAATTTTGCACCCCCTCATCCGGGGGAGGTACTGCTTTAATGCTCCTCCTCTAAAAc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX621561             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CACACACTCACACACGCGGCTAGCCTATTAACTATACTTATAGAAATGCGCTCATACACTGTGTTGCTTATCGAGATCGAGACCGAGAAGTGCGGACGAAGAAGACAACAACGATGATGATGAAGATCATCGCACGGGGCGCCGCGATAAAGACAAATTTTGCACCCACCCCTCCGGGGGAGTTACTGCTTTAATGCTCCTCCTCTAAAAACTATACTCCTCCTCCTAGCTATCCTTATCTAATAACACTTATTCTGCCTCGTTATCATCTTCCAGCGTTTAAAGAAAGCGAAACCCTTCGGTGTGAGCGAATATTTACCCAAAATATTGTTGGTGTACTCCAGAGAGCGAACTCACGCTATATTTACCCACTGTTTTCCGACCTATTCAAGCCCGCGTGAAAAGCCCACAAAGCTCACTGAAGAAGAATCGCGGGACAGGAGAGAAAGCAGTTGCGCACCAAACCCGTCTTACAAATTCTTAAAGTTGATGAGCTTTTTTTAACAAAA AAAACTACAATTAATAG  ACACACACATCCGGCCGAGGGGATGTTAGGGGAGAACACGTCGTTCGAGATTTGGGGAGAGAGGGGAAAAGGGAGTTAATTTTAGAATCCACGATACCCTTAGAATAAAGCAGTACTAGTCATATTCTTCAATTCGAGAGACATGA                                            ]
[-] EMBL CNS08SZ0             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        aaAGAAGTGCGGACGAAGAAGACAACAACGATGATGATGAAGATCATCGCACGGGGCGCCGCGATAAAGACAATTTTTGCACCC CCCCTCCGGGGGAGTTACAAATTTAATGCTCCTCCTCTAAAAACTATACTCCTCCTCCTAGCTATCCTTATCTAATAACACTTATTCTGCCTCGTTATCATCTTCCAGCGTTTAAAGAAAGCGAAA CCTTCGGTGTGAGCGAATATTTACCCAAAATATTGTTGGTGTACTCCAGAGAGCGAACTCACACTATATTTACCCACTG TTTCCGACCTATTCAAGCTCGCGT TCAAGCCCACAAAGCTCACCGAAGAAGAATAGCGGGACAGGAGAGAAAGCAGTAGCGCACCAAACCCGTCTTACAAATTCTTAAAGTTGATGAGCTTTTTTTAACAAAACAAAACTGCGATTAATAGACACACACACATCCGGCCGAGGGGATGTTAGAGGAGAACACGTCGTTCGAGATTTGGGGAGAGAGGGGAAAAGGGAGTTAATTTTAGAATCCACGATACCCTTAGAATAAAGCAGTACTAGTCATATTCTTCGATTCGAGAGACATGATACAAGTTAAAAAAGAGAAAATTAAAACGAAACAAATTAAACCA]
[+] EMBL BX616366             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GGACGAAGAAGACAACAACGATGATGATGAAGATCATCGCACGGGGCGCCGCGATAAAGACAAATTTTGCACCCACCCCTCCGGGGGAGTTACTGCTTTAATGCTCCTCCTCTAAAAACTATACTCCTCCTCCTAGCTATCCTTATCTAATAACACTTATTCTGCCTCGTTATCATCTTCCAGCGTTTAAAGAAAGCGAAACCCTTCGGTGTGAGCGAATATTTACCCAAAATATTGTTGGTGTACTCCAGAGAGCGAACTCACGCTATATTTACCCACTGTTTTCC                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BM618007             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ccgGAAGATCATCGCAAGGGGCGCCGCGATAAAGACAAATTTTGCACCCACCCCTCCGGGGGAGTTACTGCTTTAATGCTCCTCCTCTAAAAACTATACTCCTCCTCCTAGCTATCCTTATCTAATAACACTTATTCTGCCTCGTTATCATCTTCCAGCGTTTAAAGAAAGCGAAACCCTTCGGTGTGAGCGAATATTTACCGAAAACAATGTT GTGTACTCCAGAGAGCGAACTCACACTATATTTACCCACTGTTTTCCGACCTATTCAAGCTCGCGT TCAAGCCCACAAAGGTCACCGAAGAAGAATAGCGTGACAGGAGAGAAAGCAGTAGCGCACCAAACCCGTCTTACAAATTCTTAAAGTTGATGAGC TTTTTTAACAAAACAAAACTGCGATTAATAGACACACACACATCCGGCCGAGGGGATGTTAGAGGAGAACACGTCGTTCGAGATTTGGGGAGAGAGGGGAAAAGGGAGTTAATTTTAGAATCCACGATACCCTTAGAATAAAGCAGTACTAGTCATATTCTTCAATTCGAGAGACATGATACAAGTTAAAAAAGAGAAAATTAAAACGAAACAAATT      ]




>consensus_7046#0
CCGCTTCATCAGTGGCAACATCTTCCTCGCTCCGATCCTGCGTGCCGTTCTACCGCGTTC
TTCCTCCACCGCCAAGGGCAAGACCGAGGCAGCTCCAGCCGGTGCTCCCGCCGCCACTGC
GGAAGTGAAGAAAGACAACTAAACACACACACACACACCATTAAACCTAGCACTAACGTA
CTCTAGCGCGCCGTTTTTTTTTTTTGCGCGACCGTGACGCGAGATCTCGTTTTTAAGAAA
GCGAAAATAGGCGGCCTCTGCTCCAACACACAAACACACAGAGAGACACCACACAAATGC
AAAGCCTCCACCACAACATTGTTTTTTTTCTCCAATTTTATATGTAAAAACAAAATCAGA
TGCAAATACGCTAGAACGCGCGCGCAACGAAAAGTAATGCTCCAAGCGGCCGGACCTCTT
AACAAACACACACAAGTATATTCGAAGCCATCCCTGTTTCTTCTTGCACGTTGAAATACG
CATAGTTTATCGACACAAACACACACACTCACACACGCGGCTAGCCTATTAACTATACTT
ATAGAAATGCGCTCATACACTGTGTTGCTTATCGAGATCGAGACCGAGAAGTGCGGACGA
AGAAGACAACAACGATGATGATGAAGATCATCGCACGGGGCGCCGCGATAAAGACAAATT
TTGCACCCACCCCTCCGGGGGAGTTACTGCTTTAATGCTCCTCCTCTAAAAACTATACTC
CTCCTCCTAGCTATCCTTATCTAATAACACTTATTCTGCCTCGTTATCATCTTCCAGCGT
TTAAAGAAAGCGAAACCCTTCGGTGTGAGCGAATATTTACCCAAAATATTGTTGGTGTAC
TCCAGAGAGCGAACTCACGCTATATTTACCCACTGTTTTCCGACCTATTCAAGCTCGCGT
TCAAGCCCACAAAGCTCACCGAAGAAGAATAGCGGGACAGGAGAGAAAGCAGTAGCGCAC
CAAACCCGTCTTACAAATTCTTAAAGTTGATGAGCTTTTTTTAACAAAAAAAACTGCGAT
TAATAGACACACACATCCGGCCGAGGGGATGTTAGAGGAGAACACGTCGTTCGAGATTTG
GGGAGAGAGGGGAAAAGGGAGTTAATTTTAGAATCCACGATACCCTTAGAATAAAGCAGT
ACTAGTCATATTCTTCAATTCGAGAGACATGATACAAGTTAAAAAAGAGAAAATTAAAAC
GAAACAAATTAAACCA

consensusID : consensus_7046#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 478
fasta sequence

                              [GGTGCCCTTCCANCCGCCNGGTCTACGGACGACCGGTATCNTAACGGCCCTGGGGTGACCANCGGCGAAGGACCGGGACATACCTGCCATCGGTACTGCCGGTCANGCCCAGNATACGCCCCCCGGTTTCTTGTACCCACATAACGTTTTCCTCTACAACGCTNTCGANTTGAGCCCTTTTGTTTTGGAGACCCNAATCAACCACANACACCTGCGGATTTAAACTACTGACCACTGCACCACCACATCCGGCCGAGGGCGACTGTTAGAGGAGGATACCACGTTNCGTTCCGAGACTTTGGGGACGAGAGGCGGAAAAGGGAGTTAATTTTAGAATCCACGATACCCTTAGAATAAAGCAGTACTAGTCATATTCTTCGATTCGAGAGACATGATACCAAGTTAAAAAAGAGAAAATTAAAACGAAACCAAAGNTGAACCCAAACAAATAAAAAATAACCAACAAAAGACGACTGTG]

[-] EMBL BX466897             [GGTGCCCTTCCANCCGCCNGGTCTACGGACGACCGGTATCNTAACGGCCCTGGGGTGACCANCGGCGAAGGACCGGGACATACCTGCCATCGGTACTGCCGGTCANGCCCAGNATACGCCCCCCGGTTTCTTGTACCCACATAACGTTTTCCTCTACAACGCTNTCGANTTGAGCCCTTTTGTTTTGGAGACCCNAATCAACCACANACACCTGCGGATTTAAACTACTGACCACTGCACCACCACATCCGGCCGAGGGCGACTGTTAGAGGAGGATACCACGTTNCGTTCCGAGACTTTGGGGACGAGAGGCGGAAAAGGGAGTTAATTTTAGAATCCACGATACCCTTAGAATAAAGCAGTACTAGTCATATTCTTCGATTCGAGAGACATGATACCAAGTTAAAAAAGAGAAAATTAAAACGAAACCAAAGNTGAACCCAAACAAATAAAAAATAACCAACAAAAGACGACTGTG]




>consensus_7046#1
GGTGCCCTTCCANCCGCCNGGTCTACGGACGACCGGTATCNTAACGGCCCTGGGGTGACC
ANCGGCGAAGGACCGGGACATACCTGCCATCGGTACTGCCGGTCANGCCCAGNATACGCC
CCCCGGTTTCTTGTACCCACATAACGTTTTCCTCTACAACGCTNTCGANTTGAGCCCTTT
TGTTTTGGAGACCCNAATCAACCACANACACCTGCGGATTTAAACTACTGACCACTGCAC
CACCACATCCGGCCGAGGGCGACTGTTAGAGGAGGATACCACGTTNCGTTCCGAGACTTT
GGGGACGAGAGGCGGAAAAGGGAGTTAATTTTAGAATCCACGATACCCTTAGAATAAAGC
AGTACTAGTCATATTCTTCGATTCGAGAGACATGATACCAAGTTAAAAAAGAGAAAATTA
AAACGAAACCAAAGNTGAACCCAAACAAATAAAAAATAACCAACAAAAGACGACTGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7046#0      CCGCTTCATCAGTGGCAACATCTTCCTCGCTCCGATCCTGCGTGCCGTTCTACCGCGTTC 60
consensus_7046#1      ------------------------------------------------------------
                                                                                  

consensus_7046#0      TTCCTCCACCGCCAAGGGCAAGACCGAGGCAGCTCCAGCCGGTGCTCCCGCCGCCACTGC 120
consensus_7046#1      ------------------------------------------------------------
                                                                                  

consensus_7046#0      GGAAGTGAAGAAAGACAACTAAACACACACACACACACCATTAAACCTAGCACTAACGTA 180
consensus_7046#1      ------------------------------------------------------------
                                                                                  

consensus_7046#0      CTCTAGCGCGCCGTTTTTTTTTTTTGCGCGACCGTGACGCGAGATCTCGTTTTTAAGAAA 240
consensus_7046#1      ------------------------------------------------------------
                                                                                  

consensus_7046#0      GCGAAAATAGGCGGCCTCTGCTCCAACACACAAACACACAGAGAGACACCACACAAATGC 300
consensus_7046#1      ------------------------------------------------------------
                                                                                  

consensus_7046#0      AAAGCCTCCACCACAACATTGTTTTTTTTCTCCAATTTTATATGTAAAAACAAAATCAGA 360
consensus_7046#1      ------------------------------------------------------------
                                                                                  

consensus_7046#0      TGCAAATACGCTAGAACGCGCGCGCAACGAAAAGTAATGCTCCAAGCGGCCGGACCTCTT 420
consensus_7046#1      ------------------------------------------------------------
                                                                                  

consensus_7046#0      AACAAACACACACAAGTATATTCGAAGCCATCCCTGTTTCTTCTTGCACGTTGAAATACG 480
consensus_7046#1      ------------------------------------------------------------
                                                                                  

consensus_7046#0      CATAGTTTATCGACACAAACACACACACTCACACACGCGGCTAGCCTATTAACTATACTT 540
consensus_7046#1      ------------------------------------------------------------
                                                                                  

consensus_7046#0      ATAGAAATGCGCTCATACACTGTGTTGCTTATCGAGATCGAGACCGAGAAGTGCGGACGA 600
consensus_7046#1      ------------------------------------------------------------
                                                                                  

consensus_7046#0      AGAAGACAACAACGATGATGATGAAGATCATCGCACGGGGCGCCGCGATAAAGACAAATT 660
consensus_7046#1      ------------------------------------------------------------
                                                                                  

consensus_7046#0      TTGCACCCACCCCTCCGGGGGAGTTACTGCTTTAATGCTCCTCCTCTAAAAACTATACTC 720
consensus_7046#1      ------------------------------------------------------------
                                                                                  

consensus_7046#0      CTCCTCCTAGCTATCCTTATCTAATAACACTTATTCTGCCTCGTTATCATCTTCCAGCGT 780
consensus_7046#1      ------------------------------------------------------------
                                                                                  

consensus_7046#0      TTAAAGAAAGCGAAACCCTTCGGTGTGAGCGAATATTTACCCAAAATATTGTTGGTGTAC 840
consensus_7046#1      --GGTGCCCTTCCANCCGCCNGGTCTACGGACGACCGGTATCNTAACGGCCCTGGGGTGA 58
                           *       * **    *** *  *            *  **      *** **  

consensus_7046#0      TCCAGAGAGCGAACTCACGCTATATTTACCCACTGTTTTCCGACCTATTCAAGCTCGCGT 900
consensus_7046#1      CCANCGGCGAAGGACCGGGACATACCTGCCATCGGTACT----GCCGGTCANGCCCA-GN 113
                       *    * *      *  *  ***  * **  * **  *     *   *** ** *  * 

consensus_7046#0      TCAAGCCCACAAAGCTCACCGAAGAAGAATAGCGGGACAGGAGAGAAAGCAGTAGCGCAC 960
consensus_7046#1      ATACGCCCCCCG-GTTTCTTGTACCCACATAACGTTTTCCTCTACAACGC--TNTCGANT 170
                        * **** *   * *    * *     *** **         * ** **  *  **   

consensus_7046#0      CAAACCC----GTCTTACAAATTCTTAAAGTTGATGAGCTTTTTTTAACAAAAAAAACTG 1016
consensus_7046#1      TGAGCCCTTTTGTTTTGGAGACCCNAATCAACCACANACACCTGCGGATTTAAACTACTG 230
                        * ***    ** **  * *  *  *      *    *   *    *   ***  ****

consensus_7046#0      CGATTAATAGACACACACATCCGGCCGAGGGGA--TGTTAGAGGAGAACACGTCGTTC-- 1072
consensus_7046#1      --ACCACTGCACCACCACATCCGGCCGAGGGCGACTGTTAGAGGAGGATACCACGTTNCG 288
                        *  * *  **   ****************    *********** * **  ****   

consensus_7046#0      ----GAGA-TTTGGGGA-GAGAGG-GGAAAAGGGAGTTAATTTTAGAATCCACGATACCC 1125
consensus_7046#1      TTCCGAGACTTTGGGGACGAGAGGCGGAAAAGGGAGTTAATTTTAGAATCCACGATACCC 348
                          **** ******** ****** ***********************************

consensus_7046#0      TTAGAATAAAGCAGTACTAGTCATATTCTTCAATTCGAGAGACATGATAC-AAGTTAAAA 1184
consensus_7046#1      TTAGAATAAAGCAGTACTAGTCATATTCTTCGATTCGAGAGACATGATACCAAGTTAAAA 408
                      ******************************* ****************** *********

consensus_7046#0      AAGAGAAAATTAAAACGAAAC--AAATTAAACCA-------------------------- 1216
consensus_7046#1      AAGAGAAAATTAAAACGAAACCAAAGNTGAACCCAAACAAATAAAAAATAACCAACAAAA 468
                      *********************  **  * ****                           

consensus_7046#0      ----------
consensus_7046#1      GACGACTGTG 478