These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7049#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1703 fasta sequence [CCAACACTGCCAGCGTCTCGAGAAAAGCGGACAAAACGCTGTCAACTATTGTGAAGGCCAAAAACAAAAAGGCAAATGGTTTGCCAGCAGCATGGCGAGCGGAACTGTACGGTACCCGACCTGGATCGGCCCAGGCCAGACTGGAGCAGCTTTGTACCGCCCTGCATCAGGAGGTAGAGGAGCAAAAAAAGGCAAAGGCTGTGACAAGCGTCCCGCGGAAACGTACCGCTCCGAATGGGGACAGCCCTCCAAAGAAAAAGCTAACATTACCATCAACAAGCTTTAAACAGTCTAGCTCTACATCTACTGTTACTCGTGTTGCTACCGTCCCTGAAACTATCCCCGTTGCTGCTGTAACACATGCAGCCACTAAACCTGTCAGTATTGCAACTGGTACTGGGGGAGCTTGTGTTGCAACAAGCACATCTACTGTAGCAGAGAGCAATGAGATGGATGTGAGATGATGTAGAAATGAACAGTCCCGAGCCGGCTGCACTCCTTTCTCCGCCCATACCAGCGAACGATAGTATGGACTGTATGGAGTTTGACTATTCACCAGAACCAAAAAGGGCACAAAACAAATCGGCGAGCGACTCAAAACCATCGACCAACGAACAGCCGAAAAAGGCTGAAAAGCAGAAGGAAACGAACAATGATTCACATAAAGCATTGTCCGACCTGAAGACCAAATACAAAGAGGGACTGAGTGCGTTTTCTAGCTACTTTTACTGCGTAATTGACACCAACATTTTCATCGAGCATTATCAGGACTTTCAGAGCTTTCTTTCGAAGAAATACAAAGGACGTCAACCGATCGTGATCATACCGTACAAGGTGCTGCACGAGCTGGACACGGTGAAGCACAAAAAGCCGCAGCTAGCCTCGAAGATTGTGCCGGTGGTGAAATTCCTGCACAAAAATGTGCGCGCCAAAGATGCACGCGTCAAGGGCCAGCACCCGTGGGACGATACAATCGAGCTGATGCCATTGCTGTCGCCGGATGATTCCATCGTAAACTGTGCGCTGCAGGTGCAGGCGGTTGCCGGTGACGCACAGGTTGTGCTGGTATCGAACGATTGTAACATGCTGACGAAAGCGTTGGTCGCAAACTTGAACTCCTGTACGATGGAGGGGCTGCAATCGGATTACAATTTCTAGAAACCCCTTCGACTTAGATAGGTAGTCGTTTCAGTGCCTTCCAATATAAAGATGTAGGAATATGGTAGGAGCTGCTTATTGATTTGGCTGTCCTTGGCCATTTCGCTGTTGAATTATCCTTTTGTGCTGGTACACGTTGTTAATCTATCCGTTCAACATTGAACGTTTGTACATTGAATTTACTATTTTTTGTTTAATCCAGCCAGAGGGAAAAATACAGAATTTGTTGTTACTGTCCTGTTGCAACAAAGAAAATAGGACAACTTCAGCAATAGCTCAGCCACACCTAACTGGTAAATAATTTATTTTCTTTGTTTCTTTGTTTTTTGAATTTTGGAAATGAAAATAATTGCTCAGGAATGAAACAGAATAGCCATAGCAAGAATTATCATAAATATACTTATCTGCTCTTATGGAAGAGTAATTGTAAAATACAGCTAACGGCGAACGTCCTTACTGGATTAAACATGGGCTGCATGAATTTGAAGTCTTTCAGAAAGATTGAATAAACGGAGAATAAACTGTATAATAAAAATGATAAAAAA] [+] EMBL CNS08PD5 [CCAACACTGCCAGCGTCTCGAGAAAAGCGGACAAAACGCTGTCAACTATTGTGAAGGCCAAAAACAAAAAGGCAAATGGTTTGCCAGCAGCATGGCGAGCGGAACTGTACGGTACCCGACCTGGATCGGCCCAGGCCAGACTGGAGCAGCTTTGTACCGCCCTGCATCAGGAGGTAGAGGAGCAAAAAAAGGCAAAGGCTGTGACAAGCGTCCCGCGGAAACGTACCGCTCCGAATGGGGACAGCCCTCCAAAGAAAAAGCTAACATTACCATCAACAAGCTTTAAACAGTCTAGCTCTACATCTACTGTTACTCGTGTTGCTACCGTCCCTGAAACTATCCCCGTTGCTGCTGTAACACATGCAGCCACTAAACCTGTCAGTATTGCAACTGGTACTGGGGGAGCTTGTGTTGCAACAAGCACATCTACTGTAGCAGAGAGCAATGAGATGGATGTGAGATGATGTAGAAATGAACAGTCCCGAGCCGGCTGCACTCCTTTCTCCGCCCATACCAGCGAACGATAGTATGGACTGTATGGAGTTTGACTATTCACCAGAACCAAAAAGGGCACAAAACAAATCGGCGAGCGACTCAAAACCATCGACCAACGAACAGCCGAAAAAGGCTGAAAAGCAGAAGGAAACGAACAATGATTCACATAAAGCATTGTCCGACCTGAAGACCAAATACAAAGAGGGACTGAGTGCGTTTTCTAGCTACTTTTACTGCGTAATTGACACCAACATTTTCATCGAGCATTATCAGGACTTTCAGAGCTTTCTTTCGAAGAAATACAAAGGACGTCAACCGATCGTGATCATACCGTACAAGGTGCTGCACGAGCTGGACACGGTGAAGCACAAAAAGCC ] [-] EMBL CNS08PD6 [ CACCAACATTTTCATCGAGCATTATCAGGACTTTCAGAGCTTTCTTTCGAAGAAATACAAAGGACGTCAACCGATCGTGATCATACCGTACAAGGTGCTGCACGAGCTGGACACGGTGAAGCACAAAAAGCCGCAGCTAGCCTCGAAGATTGTGCCGGTGGTGAAATTCCTGCACAAAAATGTGCGCGCCAAAGATGCACGCGTCAAGGGCCAGCACCCGTGGGACGATACAATCGAGCTGATGCCATTGCTGTCGCCGGATGATTCCATCGTAAACTGTGCGCTGCAGGTGCAGGCGGTTGCCGGTGACGCACAGGTTGTGCTGGTATCGAACGATTGTAACATGCTGACGAAAGCGTTGGTCGCAAACTTGAACTCCTGTACGATGGAGGGGCTGCAATCGGATTACAATTTCTAGAAACCCCTTCGACTTAGATAGGTAGTCGTTTCAGTGCCTTCCAATATAAAGATGTAGGAATATGGTAGGAGCTGCTTATTGATTTGGCTGTCCTTGGCCATTTCGCTGTTGAATTATCCTTTTGTGCTGGTACACGTTGTTAATCTATCCGTTCAACATTGAACGTTTGTACATTGAATTTACTATTTTTTGTTTAATCCAGCCAGAGGGAAAAATACAGAATTTGTTGTTACTGTCCTGTTGCAACAAAGAAAATAGGACAACTTCAGCAATAGCTCAGCCACACCTAACTGGTAAATAATTTATTTTCTTTGTTTCTTTGTTTTTTGAATTTTGGAAAGGAAAATAATTGCTCAGGAATGAAATAGAATAGCCATAGCAAGAATTATCATAAATATACTTATCTGCTCTTATGGAAGAGTAATTGTAAAATACAGATAACGGCGAACGT ] [-] EMBL AGA281028 [ ATATTTTGTTTAATCCAGCCAG GGGAAAAATACAGAATTTGTTGTTACTGTCCTGTTGCAACAAAGAAATTAGGACAACTTCAGCAATAGCTCAGCCACACCTAACTGGTAAATAATTTATTTTCTTTGTTTCTTTGTTTTTTGAATTTTGGAAATGAAAATAATTGCTCAGGAATGAAACAGAATAGCCATAGCAAGAATTATCATAAATATACTTATCTGCTCTTATGGAAGAGTAATTGTAAAATACAGCTAACGGCGAACGTCCTTACTGGATTAAACATGGGCTGCATGAATTTGAAGTCTTTCAGAAAGATTGAATAAACGGAGAATAAACTGTATAATAAAAA ] [-] EMBL AGA281200 [ CTTTGTTTCTTTGTTTTTTGAATTTTGGAAATGAAAATAATTGCTCAGGAATGAAACAGAATAGCCATAGCAAGAATTATCATAAATATACTTATCTGCTCTTATGGAAGAGTAATTGTAAAATACAGCTAACGGCGAACGTCCTTACTGGATTAAACATGGGCTGCATGAATTTGAAGTCTTTCAGAAAGATTGAATAAACGGAGAATAAACTGTATAATAATGTTGATAAAAAA] consensusID : consensus_7049#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 745 fasta sequence [AGAATCGCCCGAGGTTGAACAATGATTCACATAAAGCATTGTCCGACCTGAAGACCAAATACAAAGAGGGACTGAGTGCGTTTTCTAGCTACTTTTACTGCGTAATTGACACCAACATTTTCATCGAGCATTATCAGGACTTTCAGAGCTTTCTTTCGAAGAAATACAAAGGACGTCAACCGATCGTGATCATACCGTACAAGGTGCTGCACGAGCTGGACACGGTGAAGCACAAAAAGCCGCAGCTAGCCTCGAAGATTGTGCCGGTGGTGAAATTCCTGCACAAAATGCTGCGCGCCAAAGATGCACGCGTCAAGGGCCAGCACCCGTGGGACGATACAATCGAGCTGATGCCATTGCTGTCGCCGGATGATTCCATCGTAAACTGTGCGCTGCAGGTGCAGGCGGTTGCCGGTGACGCACAGGTTGTGCTGGTATCGAACGATTGTAACATGCTGACGAAAGCGTTGGTCGCAAACTTGAACTCCTGTACGATGGAGGAGCTGCAATCGGATTACAATTTCTAGAAACCCCTTCGACTTAGATAGGTAGTCGTTTCAGTGCCTTCCAATATAAAGCATGTAGCGAATATGGTAGAGAGTTCGCAGTAACGATTNGGCATGTCCTTGGGCCACTTTCGCTGCTTCGAACTCATCCTTTTCGTGCTGGTACACGTTGGTTAATCTATCCGTTCAACAATTGAACGGTTGTACACTTGAATTTACTATATTTGGTTNAATCCAGC] [+] EMBL AL931531 [AGAATCGCCCGAGGTTGAACAATGATTCACATAAAGCATTGTCCGACCTGAAGACCAAATACAAAGAGGGACTGAGTGCGTTTTCTAGCTACTTTTACTGCGTAATTGACACCAACATTTTCATCGAGCATTATCAGGACTTTCAGAGCTTTCTTTCGAAGAAATACAAAGGACGTCAACCGATCGTGATCATACCGTACAAGGTGCTGCACGAGCTGGACACGGTGAAGCACAAAAAGCCGCAGCTAGCCTCGAAGATTGTGCCGGTGGTGAAATTCCTGCACAAAATGCTGCGCGCCAAAGATGCACGCGTCAAGGGCCAGCACCCGTGGGACGATACAATCGAGCTGATGCCATTGCTGTCGCCGGATGATTCCATCGTAAACTGTGCGCTGCAGGTGCAGGCGGTTGCCGGTGACGCACAGGTTGTGCTGGTATCGAACGATTGTAACATGCTGACGAAAGCGTTGGTCGCAAACTTGAACTCCTGTACGATGGAGGAGCTGCAATCGGATTACAATTTCTAGAAACCCCTTCGACTTAGATAGGTAGTCGTTTCAGTGCCTTCCAATATAAAGCATGTAGCGAATATGGTAGAGAGTTCGCAGTAACGATTNGGCATGTCCTTGGGCCACTTTCGCTGCTTCGAACTCATCCTTTTCGTGCTGGTACACGTTGGTTAATCTATCCGTTCAACAATTGAACGGTTGTACACTTGAATTTACTATATTTGGTTNAATCCAGC] [+] EMBL AGA282656 [ ACCGATCGTGATCATACCGTACAAGGTGCTGCACGAGCTGGACACGGTGAAGCACAAAAAGCCGCAGCTAGCCTCGAAGATTGTGCCGGTGGTGAAATTCCTGCACAAAATGCTGCGCGCCAAAGATGCACGCGTCAAGGGGCAGCACCCGTGGGACGATACAATCGAGCTGATGCCATTGCTGTCGCCGGATGATTCCATCGTAAACTGTGCGCTGCAGGTGCAGACGGTTGCCGGTGACGCACAGGTTGTGCTGGTATCGAACGATTGTAACATGCTGACGAAAGCGTTGGTCGCCAACTTTAACTCCTGTACGATGGAGGAGCTGCAATCGGATTACAATTTCTAGAAACCCCTTCGACTTAGATAGGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7049#0 CCAACACTGCCAGCGTCTCGAGAAAAGCGGACAAAACGCTGTCAACTATTGTGAAGGCCA 60 consensus_7049#1 ------------------------------------------------------------ consensus_7049#0 AAAACAAAAAGGCAAATGGTTTGCCAGCAGCATGGCGAGCGGAACTGTACGGTACCCGAC 120 consensus_7049#1 ------------------------------------------------------------ consensus_7049#0 CTGGATCGGCCCAGGCCAGACTGGAGCAGCTTTGTACCGCCCTGCATCAGGAGGTAGAGG 180 consensus_7049#1 ------------------------------------------------------------ consensus_7049#0 AGCAAAAAAAGGCAAAGGCTGTGACAAGCGTCCCGCGGAAACGTACCGCTCCGAATGGGG 240 consensus_7049#1 ------------------------------------------------------------ consensus_7049#0 ACAGCCCTCCAAAGAAAAAGCTAACATTACCATCAACAAGCTTTAAACAGTCTAGCTCTA 300 consensus_7049#1 ------------------------------------------------------------ consensus_7049#0 CATCTACTGTTACTCGTGTTGCTACCGTCCCTGAAACTATCCCCGTTGCTGCTGTAACAC 360 consensus_7049#1 ------------------------------------------------------------ consensus_7049#0 ATGCAGCCACTAAACCTGTCAGTATTGCAACTGGTACTGGGGGAGCTTGTGTTGCAACAA 420 consensus_7049#1 ------------------------------------------------------------ consensus_7049#0 GCACATCTACTGTAGCAGAGAGCAATGAGATGGATGTGAGATGATGTAGAAATGAACAGT 480 consensus_7049#1 ------------------------------------------------------------ consensus_7049#0 CCCGAGCCGGCTGCACTCCTTTCTCCGCCCATACCAGCGAACGATAGTATGGACTGTATG 540 consensus_7049#1 ------------------------------------------------------------ consensus_7049#0 GAGTTTGACTATTCACCAGAACCAAAAAGGGCACAAAACAAATCGGCGAGCGACTCAAAA 600 consensus_7049#1 ------------------------------------------------------------ consensus_7049#0 CCATCGACCAACGAACAGCCGAAAAAGGCTGAAAAGCAGAAGGAAACGAACAATGATTCA 660 consensus_7049#1 -------------------------------AGAATCGCCCGAGGTTGAACAATGATTCA 29 * ** * * ************* consensus_7049#0 CATAAAGCATTGTCCGACCTGAAGACCAAATACAAAGAGGGACTGAGTGCGTTTTCTAGC 720 consensus_7049#1 CATAAAGCATTGTCCGACCTGAAGACCAAATACAAAGAGGGACTGAGTGCGTTTTCTAGC 89 ************************************************************ consensus_7049#0 TACTTTTACTGCGTAATTGACACCAACATTTTCATCGAGCATTATCAGGACTTTCAGAGC 780 consensus_7049#1 TACTTTTACTGCGTAATTGACACCAACATTTTCATCGAGCATTATCAGGACTTTCAGAGC 149 ************************************************************ consensus_7049#0 TTTCTTTCGAAGAAATACAAAGGACGTCAACCGATCGTGATCATACCGTACAAGGTGCTG 840 consensus_7049#1 TTTCTTTCGAAGAAATACAAAGGACGTCAACCGATCGTGATCATACCGTACAAGGTGCTG 209 ************************************************************ consensus_7049#0 CACGAGCTGGACACGGTGAAGCACAAAAAGCCGCAGCTAGCCTCGAAGATTGTGCCGGTG 900 consensus_7049#1 CACGAGCTGGACACGGTGAAGCACAAAAAGCCGCAGCTAGCCTCGAAGATTGTGCCGGTG 269 ************************************************************ consensus_7049#0 GTGAAATTCCTGCACAAAAATGTGCGCGCCAAAGATGCACGCGTCAAGGGCCAGCACCCG 960 consensus_7049#1 GTGAAATTCCTGCACAAAATGCTGCGCGCCAAAGATGCACGCGTCAAGGGCCAGCACCCG 329 ******************* ************************************** consensus_7049#0 TGGGACGATACAATCGAGCTGATGCCATTGCTGTCGCCGGATGATTCCATCGTAAACTGT 1020 consensus_7049#1 TGGGACGATACAATCGAGCTGATGCCATTGCTGTCGCCGGATGATTCCATCGTAAACTGT 389 ************************************************************ consensus_7049#0 GCGCTGCAGGTGCAGGCGGTTGCCGGTGACGCACAGGTTGTGCTGGTATCGAACGATTGT 1080 consensus_7049#1 GCGCTGCAGGTGCAGGCGGTTGCCGGTGACGCACAGGTTGTGCTGGTATCGAACGATTGT 449 ************************************************************ consensus_7049#0 AACATGCTGACGAAAGCGTTGGTCGCAAACTTGAACTCCTGTACGATGGAGGGGCTGCAA 1140 consensus_7049#1 AACATGCTGACGAAAGCGTTGGTCGCAAACTTGAACTCCTGTACGATGGAGGAGCTGCAA 509 **************************************************** ******* consensus_7049#0 TCGGATTACAATTTCTAGAAACCCCTTCGACTTAGATAGGTAGTCGTTTCAGTGCCTTCC 1200 consensus_7049#1 TCGGATTACAATTTCTAGAAACCCCTTCGACTTAGATAGGTAGTCGTTTCAGTGCCTTCC 569 ************************************************************ consensus_7049#0 AATATAAAG-ATGTAG-GAATATGGTAGGAGCTGCTTATT---GATTTGGC-TGTCCTTG 1254 consensus_7049#1 AATATAAAGCATGTAGCGAATATGGTAGAGAGTTCGCAGTAACGATTNGGCATGTCCTTG 629 ********* ****** *********** * * * * **** *** ******** consensus_7049#0 G-CCA-TTTCGCTGTT---GAATTATCCTTTT-GTGCTGGTACACGTTG-TTAATCTATC 1307 consensus_7049#1 GGCCACTTTCGCTGCTTCGAACTCATCCTTTTCGTGCTGGTACACGTTGGTTAATCTATC 689 * *** ******** * * * ******** **************** ********** consensus_7049#0 CGTTCAACA-TTGAACGTTTGTACA-TTGAATTTACTATTTTTTGTTTAATCCAGCCAGA 1365 consensus_7049#1 CGTTCAACAATTGAACGGTTGTACACTTGAATTTACTATATTTGGTTNAATCCAGC---- 745 ********* ******* ******* ************* *** *** ******** consensus_7049#0 GGGAAAAATACAGAATTTGTTGTTACTGTCCTGTTGCAACAAAGAAAATAGGACAACTTC 1425 consensus_7049#1 ------------------------------------------------------------ consensus_7049#0 AGCAATAGCTCAGCCACACCTAACTGGTAAATAATTTATTTTCTTTGTTTCTTTGTTTTT 1485 consensus_7049#1 ------------------------------------------------------------ consensus_7049#0 TGAATTTTGGAAATGAAAATAATTGCTCAGGAATGAAACAGAATAGCCATAGCAAGAATT 1545 consensus_7049#1 ------------------------------------------------------------ consensus_7049#0 ATCATAAATATACTTATCTGCTCTTATGGAAGAGTAATTGTAAAATACAGCTAACGGCGA 1605 consensus_7049#1 ------------------------------------------------------------ consensus_7049#0 ACGTCCTTACTGGATTAAACATGGGCTGCATGAATTTGAAGTCTTTCAGAAAGATTGAAT 1665 consensus_7049#1 ------------------------------------------------------------ consensus_7049#0 AAACGGAGAATAAACTGTATAATAAAAATGATAAAAAA 1703 consensus_7049#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||