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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7050#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1337 fasta sequence
[TTACATGTTTGTTTTTATTAAAACGTGATGTGCTTCACACCATAATTTTTCCCTCTCCCCTTCCCTCGCACTTTTCCCCTCTTTTGCCAAACCCGGGCCGGGCACGGTCCGACGCGCTTAGTAGCGGTAGTGTTCCGGTTTGTACGGGCCCTCGGCCGGCAGGTTCAGGTACTCGGCCTGCCGCGCGCTCAGCTTCGTCAGCTTCACGCCCAGCTTGTCCAGGTGCAGGGCGGCCACCTCCTCGTCCAGCTTCTTCGGCAGCACGTGCACGCCGATCGCGTACTGCTCCCGGTTCGTCCACAGCTCGATCTGTGCCAGCACCTGGTTGGTGAACGAGTTCGACATGACGAAGCTGGAGTGGCCCATCGCGCA-CCCAGATACACCAGCCGGCCCTCCGCCAGCAGGATGATGTGGTTGCCGTTCGCCAGCCGGTACCGGT-CGACCTGCGGCTTGATGTTCACCCATGATGATGTCGGTGCAGCCGGTCGTCGTGACGAAGATTTGCGCCTCCTTGCTTGCCTCCTCCATCGTCGTCACCTCGTAGCCTTCCATCGCCGCCTGCAGCGCGTTGATGGGATCGATTTCGGTGATTAGCACGCGCCCGCCGGAACCGCGCAGTGCCTGGGCGCAACCCTTGCCCACATCGCCGTACCCGGCGACCACGCACACCTTGCCCGCGATCATCACGTCCGTCGCCCGCTTGATGCCGTCCAGCAGCTCCGGGTGCTCGGCGTGCACCAGGTTGGTCAGGTCGCCGCCATCGTCCAGGATCATGTTCAGCGGCTTGCCGTCCGGGAAGATGAGCGTCTGCCGGATGCACCACATGTACTCCTCGTCCGTTTCACCCTTCCACGCGAACACCGGCACGCCCGCCCTGGCCATCGCGGCGGCCGCATGGTCCTGCGTGCTGAAGATGTTACAGCTGCTCCATTGGACCTCAGCGCCTAGCTCGATCAACGTTTGTTGAGGACGGCCGTCTGGATGGTCATGTGCAGGCAGCCCGCTATCCGGGCACCCTTCAGGATCTTGAGCGGGCCGTACTTTTGGCGGCACGCCATCAGGCCCGGCATCTCATTCTCCGCCAGCACGATCTCCTTCCGCCCGAACTCGGCCAGTGAAATGTCGGCAACTTTGTACGCAGGTTTGGCCATCTTCTCCAATCGTTTGTGTTTGGTGCTGGATTGATCGGACACGCGTTTGATTGTAGATTGGTCGTTTGGCCTGCGCCTATCCGTTCCGTTGCTGCCCGTCGGACTGAACTGCTTTCACTGTGGCACGAGGAGCGCTAAGACTGCTGGCAGCTGCGTCGCGGTGTTGGCCGTTCGAAATCAACCGAG]
[+] EMBL CNS08EEN [TTACATGTTTGTTTTTATTAAAACGTGATGTGCTTCACACCATAATTTTTCCCTCTCCCCTTCCCTCGCACTTTTCCCCTCTTTTGCCAAACCCGGGCCGGGCACGGTCCGACGCGCTTAGTAGCGGTAGTGTTCCGGTTTGTACGGGCCCTCGGCCGGCAGGTTCAGGTACTCGGCCTGCCGCGCGCTCAGCTTCGTCAGCTTCACGCCCAGCTTGTCCAGGTGCAGGGCGGCCACCTCCTCGTCCAGCTTCTTCGGCAGCACGTGCACGCCGATCGCGTACTGCTCCCGGTTCGTCCACAGCTCGATCTGTGCCAGCACCTGGTTGGTGAACGAGTTCGACATGACGAAGCTGGAGTGGCCCATCGCGCA CCCAGATACACCAGCCGGCCCTCCGCCAGCAGGATGATGTGGTTGCCGTTCGCCAGCCGGTACCGGT CGACCTGCGGCTTGATGTTCACCCATGATGATGTCGGTGCAGCCGGTCGTCGTGACGAAGATTTGCGCCTCCTTGCTTGCCTCCTCCATCGTCGTCACCTCGTAGCCTTCCATCGCCGCCTGCAGCGCGTTGATGGGATCGATTTCGGTGATTAGCACGCGCCCGCCGGAACCGCGCAGTGCCTGGGCGCAACCCTTGCCCACATCGCCGTACCCGGCGACCACGCACACCTTGCCCGCGATCATCACGTCCGTCGCCCGCTTGATGCCGTCCAGCAGCTCCGGGTGCTCGGCGTGCACCAGGTTGGTCAGGTCGCCGCCATCGTCCAGGATCATGTTCAGCGGCTTGCCGTCCGGGAAGATGAGCGTCTGCCGGATGCACCACATGTACTCCTCGTCCGTTTCACCCTTCCACGCGAACACCGGCACGCCCGCCC ]
[-] EMBL CNS08EEM [ GCGCAGCCCAGATTCACCAGCCGGCCCTCCGCCAGCAGGATGATGTGGTTGCCGTTCGCCAGCCGGTACCGGTCCGA CTGCGGCTTGATGTTCACCCATGATGATGTCGGTGCAGCCGGTCGTCGTGACGAAGATTTGCGCCTCCTTGCTTGCCTCCTCCATCGTCGTCACCTCGTAGCCTTCCATCG CGCCTGCAGCGCGTTGATGGGATCGATTTCGGTGATTAGCACGCGCCCGCCGGAACCGCGCAGTGCCTGGGCGCAACCCTTGCCCACATC CCGTACCCGGCGACCACGCACACCTTGCCCGCGATCATCACGTCCGTCGCCCGCTTGATGCCGTCCAGCAGCTCCGGGTGCTCGGCGTGCACCAGGTTGGTCAGGTCGCCGCCATCGTCCAGGATCATGTTCAGCGGCTTGCCGTCCGGGAAGATGAGCGTCTGCCGGATGCACCACATGTACTCCTCGTCCGTTTCACCCTTCCACGCGAACACCGGCACGCCCGCCCTGGCCATCGCGGCGGCCGCATGGTCCTGCGTGCTGAAGATGTTACAGCTGCTCCATTGGACCTCAGCGCCTAGCTCGATCAACGTTTGTTGAGGACGGCCGTCTGGATGGTCATGTGCAGGCAGCCCGCTATCCGGGCACCCTTCAGGATCTTGAGCGGGCCGTACTTTTGGCGGCACGCCATCAGGCCCGGCATCTCATTCTCCGCCAGCACGATCTCCTTCCGCCCGAACTCGGCCAGTGAAATGTCGGCAACTTTGTACGCAGGTTTGGCCATCTTCTCCAATCGTTTGTGTTTGGTGCTGGATTGATCGGACACGCGTTTGATTGTAGATTGGTCGTTTGGCCTGCGCCTATCCGTTCCGTTGCTGCCCGTCGGACTGAACTGCTTTCACTGTGGCACGAGGAGCGCTAAGACTGCTGGCAGCTGCGTCGCGGTGTTGGCCGTTCGAAATCAACCGAG]
consensusID : consensus_7050#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1037 fasta sequence
[CGGCAACATGTCGGTGGTGGACAAGGTCCCACCAGAGATGCTCCACATGGTGCATCCCCACTGGAACCAGTTCCCGCCCATGAACCCGCTGTGGCACTCGATCCTAGGTTTTGCCATCTTCATGCTCGGAATGATCTCGATGACCGGTAAC-GTTGTGTGATGTACATCTTCACCAACACCAAGTCACTCCGAACCCCCTCCAACTTGCTGGTGGTCAATCTGGACCATGACGATGATTGCCTTCGACCGTTACAACGTCATCGTGAAGGGTCTCGCGGGCAAGCCGATGACCAACAACGGTG-CCCTGCTGCGCATTCTGGGCGTGTGGGTGTTCGCGCTGTTCTGGACTCTGGCCCCGCTGTTCGGATGGAACCGATACGTGCCGGAGGGCAACATGACCGCCTGCGGGACCGACTACCTGACCCAGACGTGGCTGAGCCGCTCGTACATCATCATCTACGCCATCTTCGTGTACTGGCTGCCGCTGCTGACCATCATCTACTCGTACACCTTCATCCTGAAGGCTGTGTCCGCTCACGAGAAGAACATGCGCGA-CAGGCCAAGAAGATGAACGTCGCCTCGCTGCGTACGCA-GAAGCCCAGAACACCAGCACCGAGATGAAGCTGGCCAAGGTTTTTCTGGTCACCATCTCGCTCTGGTTCATGGCCTGGACGCCGTATTTGGTCATCAACTTCACCGGAATCTTCAAGGCTGCCCCGATCAGCCCGCTGGCCACCATTTGGGGCTCGCTGTTCGCCAAGGCCAACGCCGTCTACAACCCGATCGTGTACGGCATCAGCCATCCGAAGTATCGCGCTGCCCTGTACCAGAAGTTCCCGTCGCTATCGTGCCAGGATGCACCAGTCGACGATGGCCAGTCGGTTGCGTCGGGTGCCACCCAGGCCTCGGACGAGAAAGCCTAAGGTTCTGTTGTTGTAGTGTTTGCGACAAGAGACCTCTCCGACCGTTGACAAGACCGACCACTTGACAAACGTTTTAGTATTTTAATTTGAGGAAGCAATAAACTTTTTTATGCC]
[+] EMBL CNS08DY0 [CGGCAACATGTCGGTGGTGGACAAGGTCCCACCAGAGATGCTCCACATGGTGCATCCCCACTGGAACCAGTTCCCGCCCATGAACCCGCTGTGGCACTCGATCCTAGGTTTTGCCATCTTCATGCTCGGAATGATCTCGATGACCGGTAAC GTTGTGTGATGTACATCTTCACCAACACCAAGTCACTCCGAACCCCCTCCAACTTGCTGGTGGTCAATCTGGACCATGACGATGATTGCCTTCGACCGTTACAACGTCATCGTGAAGGGTCTCGCGGGCAAGCCGATGACCAACAACGGTG CCCTGCTGCGCATTCTGGGCGTGTGGGTGTTCGCGCTGTTCTGGACTCTGGCCCCGCTGTTCGGATGGAACCGATACGTGCCGGAGGGCAACATGACCGCCTGCGGGACCGACTACCTGACCCAGACGTGGCTGAGCCGCTCGTACATCATCATCTACGCCATCTTCGTGTACTGGCTGCCGCTGCTGACCATCATCTACTCGTACACCTTCATCCTGAAGGCTGTGTCCGCTCACGAGAAGAACATGCGCGA CAGGCCAAGAAGATGAACGTCGCCTCGCTGCGTACGCA GAAGCCCAGAACACCAGCACCGAGATGAAGCTGGCCAAGGTTTTTCTGGTCACCATCTCGCTCTGGTTCATGGCCTGGACGCCGTATCTGGTCATCAACTTCACCGGAATCTTCAAGGCTGCCCCGATCAGCCCGCTGGCCACCATCTGGGGCTCGCTGTTCGCCAAGGCCAACGCCGTCTACAACCCGATCGTGTACGGCATCAGCCATCCGAAGTATCGCGCTGCCCTGTACCAGAAGTTCCCGTCGCTATCGTGCCAGGATGCACCAGTCGACGATGGCCAGTCGGTTGCGTCGGGTGCCACCCAGGCCTCGGACGAGAAAGCCTAAGGTTCTGTTGTTGTAGTGTTTGCGACAAGAGACCTCTCCGACCGTTGACAAGACCGA ]
[-] EMBL CNS08DY1 [ ACCGGTAACGGTTGTGTGATGTACATCTTCACCAACACCAAGTCACTCCGAACCCCCTCCGACTTGCTGGTGGTCAATCTGGACCATGACGATGATTGCCTTCGACCGTTACAACGTCATCGTGAAGGGTCTCGCGGGCAAGCCGATGACCAACAACGGTGCCCCTG TGCGCATTCTGGGCGTGTGGGTGTTCGCGCTGTTCTGGACTCTGGCCCCGCTGTTCGGATGGAACCGATACGTGCCGGAGAAAAAAATGACCG CTGCGGGACCGACTACCTGACCCAGACGTGGCTGAGCCGCTCGTACATCATCATCTACGCCATCTTCGTGTACTGGCTGCCGCTGCTGACCATCATCTACTCGTATACCTTCATCCTGAAGGCTGTGTCCGCTCACGAGAAGAAAATGCGCGAGCAGGCCAAGAAGATGAACGTCGCCTCGCTGCGTACGCAGGAAGCCCAGAACACCAGCACCGAGATGAAGCTGGCCAAGGTCGCCCTGGTCACCATCTCGCTCTGGTTCATGGCCTGGACGCCGTATTTGGTCATCAACTTCACCGGAATCTTCAAGGCTGCCCCGATCAGCCCGCTGGCCACCATTTGGGGCTCGCTGTTCGCCAAGGCCAACGCCGTCTACAACCCGATCGTGTACGGCATCAGCCATCCGAAGTATCGCGCTGCCCTGTACCAGAAGTTCCCGTCGCTATCGTGCCAGGATGCACCAGTCGACGATGGCCAGTCGGTTGCGTCGGGTGCCACCCAGGCCTCGGACGAGAAAGCCTAAGGTTCTGTTGTTGTAGTGTTTGCGACAAGAGACCTCTCCGACCGTTGACAAGACCGACCACTTGACAAACGTTTTAGTATTTTAATTTGAGGAAGCAATAAACTTTTTTATGCC]
[-] EMBL CNS08GQZ [ CTGGACGCCGTATTTGGTCATCAACTTCACCGGAATTTTAAAGGCTGCCCCGATCAGCCCGCTGGCCACCATTTGGGGGTCGCTGTTCGCCAAGGCCAA ]
consensusID : consensus_7050#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 209 fasta sequence
[CCAAAACCAGAAACAAGGGACGGAGGAAACGACGAGGAAGAACAATCTACTACGGAAGAAAGGCCTGCAGCAGAACAGGGGGAAAAGGCCACACAGGGGGACGAAGGGGGTGGCCCGAAAGAAAGGACCGACAAAGGAGAACCCAAGCCGGGGGAGGGGGAGCAAAAGCCGGAGAAGAACAAGGCACTACCCAAAGGCCGAAAGGACAA]
[+] EMBL BX616413 [CCAAAACCAGAAACAAGGGACGGAGGAAACGACGAGGAAGAACAATCTACTACGGAAGAAAGGCCTGCAGCAGAACAGGGGGAAAAGGCCACACAGGGGGACGAAGGGGGTGGCCCGAAAGAAAGGACCGACAAAGGAGAACCCAAGCCGGGGGAGGGGGAGCAAAAGCCGGAGAAGAACAAGGCACTACCCAAAGGCCGAAAGGACAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7050#1 ------------------------------------CGGCAACATGTCGGTGGTGGACAA 24
consensus_7050#2 ------------------------------------------------------------
consensus_7050#0 TTACATGTTTGTTTTTATTAAAACGTGATGTGCTTCACACCATAATTTTTCCCTCTCCCC 60
consensus_7050#1 GGTCCCACCAGAGATGCTCCACATGGTGCATCCCCACTGGAACCAGTTCCCGCCCATGAA 84
consensus_7050#2 ------------------------------------------------------------
consensus_7050#0 TTCCCTCGCACTTTTCCCCTCTTTTGCCAAACCCGGGCCGGGCACGGTCCGACGCGCTTA 120
consensus_7050#1 CCCGCTGTGGCACTCGATCCTAGGTTTTGCCATCTTCATGCTCGGAATGATCTCGATGAC 144
consensus_7050#2 ------------------------------------------------------------
consensus_7050#0 GTAGCGGTAGTGTTCCGGTTTGTACGGGCCCTCGGCCGGCAGGTTCAGGTACTCGGCCTG 180
consensus_7050#1 CGGTAACGTTGTGTGATGTACATCTTCACCAA---CACCAAGTCACTCCGAACCCCCTCC 201
consensus_7050#2 ------------------------------------------------------------
consensus_7050#0 CCGCGCGCTCAGCTTCGTCAGCTTCACGCCCAGCTTGTCCAGGTGCAGGGCGGCCACCTC 240
consensus_7050#1 AACTTGCTGGTGGTCAATCTGGACCATGACGATGATTGCCTTCGACCGTTACAACGTCAT 261
consensus_7050#2 ------------------------------------------------------------
consensus_7050#0 CTCGTCCAGCTTCTTCGGCAGCACGTGCACGCCGATCGCGTACTGCTCCCGGTTCGTCCA 300
consensus_7050#1 CGTGAAGGGTCTCGCGGGCAAGCCGATGACCAACAACGGTGCCCTGCTGCGCATTCTGGG 321
consensus_7050#2 ------------------------------------------------------------
consensus_7050#0 CAGCTCGATCTGTGCCAGCACCTGGTTGGTGAACGAGTTCGACATGACGAAGCTGGAGTG 360
consensus_7050#1 CGTGTGGGTGTTCGCGCTGTTCTGGACTCTGGCCCCGCTGTTCGGATGGAACCGATACGT 381
consensus_7050#2 ------------------------------------------------------------
consensus_7050#0 GCCCATCGCGCACCCAGATACACCAGCCGGCCCTCCGCCAGCAGGATGATGTGGTTGCCG 420
consensus_7050#1 GCCGGAGGGCAACATGACCGCCTGCGGGACCGACTACCTGACCCAGACGTGGCTGAGCCG 441
consensus_7050#2 ------------------------------------------------------------
consensus_7050#0 TTCGCCAGCCGGTACCGGTCGACCTGCGGCTTGATGTTCACCCATGATGATGTCGGTGCA 480
consensus_7050#1 CTCGTACATCATCATCTACGCCATCTTCGTGTACTGGCTGCCGCTGCTGACCATCATCTA 501
consensus_7050#2 ------------------------------------------------------------
consensus_7050#0 GCCGGTCGTCGTGACGAAGATTTGCGCCTCCTTGCTTGCCTCCTCCATCGTCGTCACCTC 540
consensus_7050#1 CTCGTACACCTTCATCCTGAAGGCTGTGTCCGCTCACGAGAAGAACATGCGCGACAGGCC 561
consensus_7050#2 ------------------------------------------------------------
consensus_7050#0 GTAGCCTTCCATCGCCGCCTGCAGCGCGTTGATGGGATCGATTTCGGTGATTAGCACGCG 600
consensus_7050#1 AAGAAGATGAACGTCGCCTCGCTGCGTACG-CAGAAGCCCAGAACACCAGCACCGAGATG 620
consensus_7050#2 ------------------------------------------------------------
consensus_7050#0 CCCGCCGGAACCGCGCAGTGCCTGGGCGCAACCCTTGCCCACATCGCCGTACCCGGCGAC 660
consensus_7050#1 AAGCTGGCCAAGGTTTTTCTGGTCACCATCTCGCTCTGGTTCATGGCCTGGACGCCGTAT 680
consensus_7050#2 ------------------------------------------------------------
consensus_7050#0 CACGCACACCTTGCCCGCGATCATCACGTCCGTCGCCCGCTTGATGCCGTCCAGCAGCTC 720
consensus_7050#1 TTGGTCATCAACTTCACCGGAATCTTCAAGGCTGCCCCGATCAGCCCGCTGGCCACCATT 740
consensus_7050#2 ------------------------------------------------------------
consensus_7050#0 CGGGTGCTCGGCGTGCACCAGGTTGGTCAGGTCGCCGCCATCGTCCAG--GATCATGTTC 778
consensus_7050#1 TGGGGCTCGCTGTTCGCCAAGGCCAACGCCGTCTACAACCCGA--TCGTGTACGGCATCA 798
consensus_7050#2 --------------------------------CCAAAACCAGAAACAAGGGACGGAGGAA 28
consensus_7050#0 AGCGGCTTGCCGTCCGGGAAGATGAGCGTCTGCCGGATGCACCA--CATGTACTCCTCGT 836
* * * * **
consensus_7050#1 GCCATCCGAAGTATCGCGCTGCCCT-GTACCAGAAGTTCCCGTCGCTATCGTGCCAGGA- 856
consensus_7050#2 ACGACGAGGAAGAACAATCTACTAC-GGAAGAAAGGCCTGCAGCAGAACAGGGGGAAAA- 86
consensus_7050#0 CCGTTTCACCCTTCCACGCGAACACCGGCACGCCCGCCCTGGCCATCGCGGCGGCCGCAT 896
* * * * * * * * *
consensus_7050#1 TGCACCAGTCGACGATGGCCAGTCGGTTGCGTCGGGTGCCACCCAGGCCTCGGACGAGAA 916
consensus_7050#2 GGCCACACAGGGGGACGA--AGGGGGTGGC-CCGAAAG----AAAGGACCGACAAAGGAG 139
consensus_7050#0 GGTCCTGCGTGCTGAAGATGTTACAGCTGCTCCATTGGAC-CTCAGCGCCTAGCTCGATC 955
* * ** * * ** * * ** *
consensus_7050#1 AGCCTAAGGTTCTGTTGTTGTAGTGTTTGCGACAAGAGACCTCTCCGACCGTTGACAAGA 976
consensus_7050#2 AACCCAAGCCGGGGGAGGGGGAGCAAAAGCCGGAGAAGAACAAGGC-ACTACCCA-AAGG 197
consensus_7050#0 AACGTTTGTTGAGGACGGCCGTCTGGATGGTCATGTGCAGGCAGCCCGCTATCCGGGCAC 1015
* * * * * * * * *
consensus_7050#1 CCGACCACTTGACAAACGTTTTAGTATTTTAATTTGAGGAAGCAATAAACTTTTTTATGC 1036
consensus_7050#2 CCGAAAG---GACAA--------------------------------------------- 209
consensus_7050#0 CCTTCAGGATCTTGAGCGGGCCGTACTTTTGGCGGCACGCCATCAGGCCCGGCATCTCAT 1075
** *
consensus_7050#1 C----------------------------------------------------------- 1037
consensus_7050#2 ------------------------------------------------------------
consensus_7050#0 TCTCCGCCAGCACGATCTCCTTCCGCCCGAACTCGGCCAGTGAAATGTCGGCAACTTTGT 1135
consensus_7050#1 ------------------------------------------------------------
consensus_7050#2 ------------------------------------------------------------
consensus_7050#0 ACGCAGGTTTGGCCATCTTCTCCAATCGTTTGTGTTTGGTGCTGGATTGATCGGACACGC 1195
consensus_7050#1 ------------------------------------------------------------
consensus_7050#2 ------------------------------------------------------------
consensus_7050#0 GTTTGATTGTAGATTGGTCGTTTGGCCTGCGCCTATCCGTTCCGTTGCTGCCCGTCGGAC 1255
consensus_7050#1 ------------------------------------------------------------
consensus_7050#2 ------------------------------------------------------------
consensus_7050#0 TGAACTGCTTTCACTGTGGCACGAGGAGCGCTAAGACTGCTGGCAGCTGCGTCGCGGTGT 1315
consensus_7050#1 ----------------------
consensus_7050#2 ----------------------
consensus_7050#0 TGGCCGTTCGAAATCAACCGAG 1337
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||