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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7055#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1021 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTC--GACAGGAGGTGTAATAGCAACTCGTTACGCTAGCGATCGACCACAAGGCATCACTACACAAATTTCAGAATGAAAGCCTTCACCTTTACGGTTGCCTTATTCATGGGCGTTCTCAGTGTTTCGTTAGCACAACGTGAAACATCTCTTAGAGTCATCGATGCGCTACGCGACCTCCATCCTGCTTACAAGCAGCTGCGCGATGTCGTCGTCCAGGCAGTGGCCGGAGCGAAACTGAACAGCTCAGAAGTGATCTTCAAGTTCAACATAGACATTGCATCGCGCAAAGAATCGTTCATGCAAACCGCCATCAAGACAGAAGCGAACGTATTACGGCAGGTGAACGGACAGAGCATCAACATCGATACCAGTTGTCTCGGGTTTTTGCGCCAAAGCATCGACGTGAACATGAATCTTGCGGGTGTGTCCTTCACCAACTGCCTGAACAACGTTGATGCTTCGCTTGCATCAGAAATCACGCGCGTGTACGCTGAGCTACAAGTGAACGAAACATCATTCGTGAATCTGAGCGTGTACGATGTGTTCCGTGGGCAGAACGTGTTCGTAAACCCGCAAACCATTGTCGATCGGTTGGTGGGAGAAGCTGTCCTCGCTGCAGCAGGCTCCGACCGAATTGACCGAGGAGCTGACCCTTCTGGTTGAAGCGTTCGAGGGTCGGCTGGGTGAGGTTCGGGCGGCTTACACCAGTTGCCTGACGATGAACGACCAGCTGCTACAGACCACACTTGGCACGGTGCTTACGCAACTGCAACAAATCTGTCTCGGATCGTTACTGCCGGCTGCTTCTACCTCGGAACCAACGGAGGAAACTGAGCAAACGGAACAAACAGACCAAACCGAGCAAACGGAAGCAACAGAAGAGACAGAATCTACCGAACCGGCCTCGGAACCAGCGCCCGAGATTCCAACCGAAACGGAAGTGCCTCCCACTGAAGTGGCTGAACCGGAACCACCTAAAAAAGGAAAAAATTATAGAAA]
[+] EMBL BM584011 [CCGCCCACGCGTCCGCCCACGCGTCCGGACAGGAGGTGTAATAGCAACTCGTTACGCTAGCGATCGACCACAAGGCATCACTACACAAATTTCAGAATGAAAGCCTTCACCTTTACGGTTGCCTTATTCATGGGCGTTCTCAGTGTTTCGTTAGCACAACGTGAAACATCTCTTAGAGTCATCGATGCGCTACGCGACCTCCATCCTGCTTACAAGCAGCTGCGCGATGTCGTCGTCCAGGCAGTGGCCGGAGCGAAACTGAACAGCTCAGAAGTGATCTTCAAGTTCAACATAGACATTGCATCGCGCAAAGAATCGTTCATGCAAACCGCCATCAAGACAGAAGCGAACGTATTACGGCAGGTGAACGGACAGAGCATCAACATCGATACCAGTTGTCTCGGGTTTTTGCGCCAAAGCATCGACGTGAACATGAATCTTGCGGGTGTGTCCTTCACCAACTGCCTGAACAACGTTGATGCTTCGCTTGCATCAGAAATCACGCGCGTGTACGCTGAGCTACAAGTGAACGAAACATCATTCGTGAATCTGAGCGTGTACGATGTGTTCCGTGGGCAGAACGTGTTCGTAAACCCGCAAACCATTGTCGATCGGTTGGTGGGAGAAGCTGTCCTCGCTGC ]
[+] EMBL BM626880 [CCGCGGACGCGTGGGCGGACGCGTG GGCAGGAGGTGTAATAGCAACTCGTTACGCTAGCGATCGACCACAAGGCATCACTACACAAATTTCAGAATGAAAGCCTTCACCTTTACGGTTGCCTTATTCATGGGCGTTCTCAGTGTTTCGTTAGCACAACGTGAAACATCTCTTAGAGTCATCGATGCGCTACGCGACCTCCATCCTGCTTACAAGCAGCTGCGCGATGTCGTCGTCCAGGCAGTGGCCGGAGCGAAACTGAACAGCTCAGAAGTGATCTTCAAGTTCAACATAGACATTGCATCGCGCAAAGAATCGTTCATGCAAACCGCCATCAAGACAGAAGCGAACGTATTACGGCAGGTGAACGGACAGAGCATCAACATCGATACCAGTTGTCTCGGGTTTTTGCGCCAAAGCATCGACGTGAACATGAATCTTGCGGGTGTGTCCTTCACCAACTGCCTGAACAACGTTGATGCTTCGCTTGCATCAGAAATCACGCGCGTGTACGCTGAGCTACAAGTGAACGAAACATCATTCGT ]
[+] EMBL CNS095HE [ C GACAGGAGGTGTAATAGCAACTCGTTACGCTAGCGATCGACCACAAGGCATCACTACACAAATTTCAGAATGAAAGCCTTCACCTTTACGGTTGCCTTATTCATGGGCGTTCTCAGTGTTTCGTTAGCACAACGTGAAA ATCTCTTAGAGTCATCGATGCGCTACGCGACCTCCATCCTGCTTACAAGCAGCTGCGCGATGTCGTCGTCCAGGCAGTGGCCGGAGCGAAACTGAACAGCTCAGAAGTGATCTTCAAGTTCAACATAGACATTGCATCGCGCAAAGAATCGTTCATGCAAACCGCCATCAAGACAGAAGCGAACGTATTACGGCAGGTGAACGGACAGAGCATCAACATCGATACCAGTTGTCTCGGGTTTTTGCGCCAAAGCATCGACGTGAACATGAATCTTGCGGGTGTGTCCTTCACCAACTGCCTGAACAACGTTGATGCTTCGCTTGCATCAGAAATCACGCGCGTGTACGCTGAGCTACAAGTGAACGAAACATCATTCGTGAATCTGAGCGTGTACGATGTGTTCCGTGGGCAGAACGTGTTCGTAAACCCGCAAACCATTGTCGATCGGTTGGT GGAGAAGCTGTCCTCGCTGCAGCAGGCTCCGACCGAATTGACCGAGGAGCTGACCCTTCTGGTTGAAGCGTTCGAGGGTCGGCTGGGTGAGGTTCGGGCGGCTTACACCAGTTGCCTGACGATGAACGACCAGCTGCTACAGACCACACTTGGCACGGTGCTTACGCAACTGCAACAAATCTGTCTCGGATCGTTACTGCCGGCTGCTTCTACCTCGGAACCAACGGAGGAAACTGAGCAAACGGAACAAACAGACCAAACCGAGCAAACGGAAGCAACAGAAGAGACAGAATCTACCGAACCGGCCTCGGAACCAGCGCCCGAGATTCCAACCGAAACGGAAGTGCCTCCCACTGAAGTGGCTGAACCGGAACCACCTAAAAAAGGAAAAAATTATAGAAA]
consensusID : consensus_7055#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 830 fasta sequence
[CGACCCACGCGTCCGCACGGGCAAACCGCTCGGCGTCGAGTACGCGATCAAGGCGCACGTCGGCGAGGACGAGAGCGACAAGGGCCACAAGCGCAGCGCCGTCACGCTGACGATCAAGAAGCTCCAGTACGCGCCGGTGTCCCGCGGCCGTCGTCTTCGTTCG-TCGCTCGTCAGCAAGGGCTTCACCTTCTCGCAGGGCAAGATCAACCTGGAGGTAACGCTCGATCGGGAGATCTACTACCACGGTGAGAAGATTGCGGCCAACATCGTCGTGACGAACAACTCGCGCAAGACTGTCAAGAGCATCAAGTGCTTCGTGGTGCAGCACTGTGAGGTCACGATGGTGAATGCACAGTTCAGCAAGCACATCGCCTCGCTGGAGACGCGCGAGGGTTGCCCGATCACGCCCGGGGCGAGCTTCACGAAATCGTTCTTCCTGGTCCCGCTCGCCTCCAGCAACAAGGACCGCCGGGGCATTGCGCTCGACGGCCACCTGAAGGAGGATGACGTCAACCTGGCCTCGTCCACGCTGATCAGCGAGGGCAAGTGTCCGTCGGATGCGATGGGTATTGTCATCTCGTACTCGCTGCGCGTCAAGCTCAACTGTGGCACGCTCGGCGGTGAACTCCAGACGGACGTACCGTTCAAGCTGATGAACCCAGCACCTGGATCCGTCGAGCGAGAGCGCGTGAACGCCCTGAAGAAGATGAAGTCGATAGAGCGCCACCGTTACGAGAACTCGCACTACGCCGACGATGACGACAACATCGTGTTCGAAGACTTTGCCCGCCTGCGGATGAACGAGCCGGGAGTAAGCCTGTCCCGCCTGA]
[+] EMBL BM642133 [CGACCCACGCGTCCGCACGGGCAAACCGCTCGGCGTCGAGTACGCGATCAAGGCGCACGTCGGCGAGGACGAGAGCGACAAGGGCCACAAGCGCAGCGCCGTCACGCTGACGATCAAGAAGCTCCAGTACGCGCCGGTGTCCCGCGGCCGTCGTCTTCGTTCG TCGCTCGTCAGCAAGGGCTTCACCTTCTCGCAGGGCAAGATCAACCTGGAGGTAACGCTCGATCGGGAGATCTACTACCACGGTGAGAAGATTGCGGCCAACATCGTCGTGACGAACAACTCGCGCAAGACTGTCAAGAGCATCAAGTGCTTCGTGGTGCAGCACTGTGAGGTCACGATGGTGAATGCACAGTTCAGCAAGCACATCGCCTCGCTGGAGACGCGCGAGGGTTGCCCGATCACGCCCGGGGCGAGCTTCACGAAATCGTTCTTCCTGGTCCCGCTCGCCTCCAGCAACAAGGACCGCCGGGGCATTGCGCTCGACGGCCACCTGAAGGAGGATGACGTCAACCTGGCCTCGTCCACGCTGATCAGCGAGGGCAAGTGTCCGTCGGATGCGATGGGTATTGTCATCTC ]
[+] EMBL BM644263 [ ccgcccacgCGTCCGCCCACGCGTCCG GGGCTTCACCTTCTCGCAGGGCAAGATCAACCTGGAGGTAACGCTCGATCGGGAGATCTACTACCACGGTGAGAAGATTGCGGCCAACATCGTCGTGACGAACAACTCGCGCAAGACTGTCAAGAGCATCAAGTGCTTCGTGGTGCAGCACTGTGAGGTCACGATGGTGAATGCACAGTTCAGCAAGCACATCGCCTCGCTGGAGACGCGCGAGGGTTGCCCGATCACGCCCGGGGCGAGCTTCACGAAATCGTTCTTCCTGGTCCCGCTCGCCTCCAGCAACAAGGACCGCCGGGGCATTGCGCTCGACGGCCACCTGAAGGAGGATGACGTCAACCTGGCCTCGTCCACGCTGATCAGCGAGGGCAAGTGTCCGTCGGATGCGATGGGTATTGTCATCTCGTACTCGCTGCGCGTCAAGCTCAACTGTGGCACGCTCGGCGGTGAACTCCAGACGGACGTACCGTTCAAGCTGATGAACCCAGCACCTGGATCCGTCGAGCGAGAGCGCGTGAACGCCCTGAAGAAGATGAAGTCGATAGAGCGCCACCGTTACGAGAACTCGCACTACGCCGACGATGACGACAACATCGTGTTCGAAGACTTTGCCCGCCTGCGGATGAACGAGCCGGGAGTAAGCCTGTCCCGCCTGA]
consensusID : consensus_7055#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence
[CCAGACAGGAGGTGTAATAGCAACTCGTTACGCTAGCGATCGACCACAAGGCATCACTACACAAATTTCAGAATGAAAGCCTTCACCTTTACGGTTGCCTTATTCATGGGCGTTCTCAGTGTTTCGTTAGCACAACGTGAAACCATCTCTTAGAGTCATCGATGCGCTACGCGACCTCCATCCTGCTTACAAGCAGCTGCGCGATGTCGTCGTCCAGGCAGTGGCCGGAGCGAAACTGAACAGCTCAGAAGTGATCTTCAAGTTCAACATAGACATTGCATCGCGCAAAGAATCGTTCATGCAAACCGCCATCAAGACAGAAGCGAACGTATTACGGCAGGTGAACGGACAGAGCATCAACATCGATACCAGTTGTCTCGGGTTTTTGCGCCAAAGCATCGACGTGAACATGAATCTTGCGGGTGTGTCCTTCACCAACTGCCTGAACAACGTTGATGCTTCGCTTGCATCAGAAATCCCGCGCGTGTACGCTGAGCTACAAGTGAACGAAACATGAAAAAAAAAAGGAG]
[+] EMBL CNS08RDQ [CCAGACAGGAGGTGTAATAGCAACTCGTTACGCTAGCGATCGACCACAAGGCATCACTACACAAATTTCAGAATGAAAGCCTTCACCTTTACGGTTGCCTTATTCATGGGCGTTCTCAGTGTTTCGTTAGCACAACGTGAAACCATCTCTTAGAGTCATCGATGCGCTACGCGACCTCCATCCTGCTTACAAGCAGCTGCGCGATGTCGTCGTCCAGGCAGTGGCCGGAGCGAAACTGAACAGCTCAGAAGTGATCTTCAAGTTCAACATAGACATTGCATCGCGCAAAGAATCGTTCATGCAAACCGCCATCAAGACAGAAGCGAACGTATTACGGCAGGTGAACGGACAGAGCATCAACATCGATACCAGTTGTCTCGGGTTTTTGCGCCAAAGCATCGACGTGAACATGAATCTTGCGGGTGTGTCCTTCACCAACTGCCTGAACAACGTTGATGCTTCGCTTGCATCAGAAATCCCGCGCGTGTACGCTGAGCTACAAGTGAACGAAACATGAAAAAAAAAAGGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7055#0 ---------------------------------CCGCCCACGCGTCCGCCCACGCGTCGA 27
consensus_7055#2 -------------------------------------------------------CCAGA 5
consensus_7055#1 CGACCCACGCGTCCGCACGGGCAAACCGCTCGGCGTCGAGTACGCGATCAAGGCGCACGT 60
*
consensus_7055#0 CAGGAGGTGTAATAGCAACTCGTTACGCTAGCG-ATCGACCACAAGGCATCACTACACAA 86
consensus_7055#2 CAGGAGGTGTAATAGCAACTCGTTACGCTAGCG-ATCGACCACAAGGCATCACTACACAA 64
consensus_7055#1 CGGCGAGGACGAGAGCGACAAGGGCCACAAGCGCAGCGCCGTCACGCTGACGATCAAGAA 120
* * * * *** ** * * * **** * ** * ** * * * * **
consensus_7055#0 ATTTCAGAATGAAAGCCTTCACCTTTACGGTTGCCTT-ATTCATGGGCGTTC--TCAGTG 143
consensus_7055#2 ATTTCAGAATGAAAGCCTTCACCTTTACGGTTGCCTT-ATTCATGGGCGTTC--TCAGTG 121
consensus_7055#1 GCTCCAGTACGCGCCGGTGTCCCGCGGCCGTCGTCTTCGTTCGTCGCTCGTCAGCAAGGG 180
* *** * * * ** * ** * *** *** * * ** ** *
consensus_7055#0 TTTCGTTAGCACAACGTGAAAC-ATCTCTTAGAGTCATCGATGCGCTACGCGACCT-CCA 201
consensus_7055#2 TTTCGTTAGCACAACGTGAAACCATCTCTTAGAGTCATCGATGCGCTACGCGACCT-CCA 180
consensus_7055#1 CTTCACCTTCTCGCAGGGCAAGATCAACCTGGAGGTAACGCTCGATCGGGAGATCTACTA 240
*** * * * * ** * * *** * ** * * ** ** * *
consensus_7055#0 TCCTGCTTACAAGCAGCTGCGCGATGTCGTCGTCCAGGCAGTGGCCGGAGCGAAACTGAA 261
consensus_7055#2 TCCTGCTTACAAGCAGCTGCGCGATGTCGTCGTCCAGGCAGTGGCCGGAGCGAAACTGAA 240
consensus_7055#1 CCACGGTGAGAAGATTGCGGCCAACATCGTCGTGACG--AACAACTCGCGCAAGACTGTC 298
* * * * *** * * * ******* * * * * ** * ****
consensus_7055#0 CAGCTCAGAAGTGATCTTCAAGTTCAACATAG--ACATTGCATCGCGCAAAGAATCGTTC 319
consensus_7055#2 CAGCTCAGAAGTGATCTTCAAGTTCAACATAG--ACATTGCATCGCGCAAAGAATCGTTC 298
consensus_7055#1 AAGAGCATCAAGTGCTTCGTGGTGCAGCACTGTGAGGTCACGATGGTGAATGCACAGTTC 358
** ** * * ** ** ** * * * * * ** * * ****
consensus_7055#0 ATGCAAAC-CGCCATCAAGACAGAAGCGAACGTATTACGGCAGGTGAACGGACAGAGCAT 378
consensus_7055#2 ATGCAAAC-CGCCATCAAGACAGAAGCGAACGTATTACGGCAGGTGAACGGACAGAGCAT 357
consensus_7055#1 A-GCAAGCACATCGCCTCGCTGGAGACGCGCGAGGGTTGCCCGATCA-CGCCCGGGGCGA 416
* **** * * * * * ** ** ** * * * * * ** * * **
consensus_7055#0 CAACATCGATACCAGTTGTCTCGGGTTTTTGCGCCAAAGCATCGACGTGAACATGAATCT 438
consensus_7055#2 CAACATCGATACCAGTTGTCTCGGGTTTTTGCGCCAAAGCATCGACGTGAACATGAATCT 417
consensus_7055#1 GCTTCACGAAATCGTTCTTCCTGGTCCCGCTCGCCT-----CCAGC---AACAAGGACCG 468
*** * * * ** ** **** * * **** * * *
consensus_7055#0 TGCGGGTGTGTCCTTCACCAACTGCCTGAACAACGTTGATGCTTCGCTTGCATCAGAAAT 498
consensus_7055#2 TGCGGGTGTGTCCTTCACCAACTGCCTGAACAACGTTGATGCTTCGCTTGCATCAGAAAT 477
consensus_7055#1 CCGGGGCATTGCGCTCGACGGCCACCTGAAGGAGGATGACGTCAACCTGGCCTCG----- 523
*** * * ** * * ****** * * *** * ** ** **
consensus_7055#0 CACGCGCGTGTACGCTGAGCTACAAGTGAACGAAACATCATTCGTGAATCTGAGCGTGTA 558
consensus_7055#2 CCCGCGCGTGTACGCTGAGCTACAAGTGAACGAAACATGAAA-AAAAAAAGGAG------ 530
consensus_7055#1 TCCACGCTGATCAGCGAGG--GCAAGTGTCCGTCGGATGCGA--TGGGTATTGTCATCTC 579
* *** * ** * ****** ** **
consensus_7055#0 CGATGTGTTCCGTGGGCAGAACGTGTTCGTAAACCCGCAAACCATTGTCGATCGGTTGGT 618
consensus_7055#2 ------------------------------------------------------------
consensus_7055#1 GTACTCGCTGCGCGTCAAGCTCAACTGTG---GCACGCTCGGCGGTGAACTCCAGACGGA 636
consensus_7055#0 GGGAGAAGCTGTCCTCGCTGCAGCAGGCTCCGACCGAATTGACCGAGGAGCTGACCCTTC 678
consensus_7055#2 ------------------------------------------------------------
consensus_7055#1 CGTACCGTTCAAGCTGATGAACCCAGCACCTGGATCCGTCGAGCGAGAGCGCGTGAACGC 696
consensus_7055#0 TGGTTGAAGCGTTCGAGGGTCGGCTGGGTGAGGTTCGGGCGGCTTACACCAGTTGCCTGA 738
consensus_7055#2 ------------------------------------------------------------
consensus_7055#1 CCTGAAGAAGATGAAGTCGATAGAGCGCCACCGTTACGAGAACTCGCACTACGCCGACGA 756
consensus_7055#0 CGATGAACGACCAGCTGCTACAGACCACACTTGGCACGGTGCTTACGCAACTGCAACAAA 798
consensus_7055#2 ------------------------------------------------------------
consensus_7055#1 TGACGACAACATCGTGTTCGAAGACTTTGCCCGCCTGCGGATGAACGAGCCGGGAGTAAG 816
consensus_7055#0 TCTGTCTCGGATCGTTACTGCCGGCTGCTTCTACCTCGGAACCAACGGAGGAAACTGAGC 858
consensus_7055#2 ------------------------------------------------------------
consensus_7055#1 CCTGTCCCGCCTGA---------------------------------------------- 830
consensus_7055#0 AAACGGAACAAACAGACCAAACCGAGCAAACGGAAGCAACAGAAGAGACAGAATCTACCG 918
consensus_7055#2 ------------------------------------------------------------
consensus_7055#1 ------------------------------------------------------------
consensus_7055#0 AACCGGCCTCGGAACCAGCGCCCGAGATTCCAACCGAAACGGAAGTGCCTCCCACTGAAG 978
consensus_7055#2 ------------------------------------------------------------
consensus_7055#1 ------------------------------------------------------------
consensus_7055#0 TGGCTGAACCGGAACCACCTAAAAAAGGAAAAAATTATAGAAA 1021
consensus_7055#2 -------------------------------------------
consensus_7055#1 -------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||