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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7068#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1133 fasta sequence
[GCAGATTCGCCCGATGTTTCTTTTAGAGCCAGTGAAAAAATGGGAATGAAAAATCAGACATCAGTTCCTGGAAGTTGAAACAACAAAAATCCCAGAACACCACCAGTGACATGTGACAGTGAGTGTGATATGTCTCCTGTGTTTTATTTGTTCCCTGTATTGTTTTGGGTTTTCCTGTTTCCCTAGTGAAATGTGAATTCTTCTTGCTTTGGTTCTGATTCAGTTCTTCCAGTGTGTTGAGCTGCGTGTGTTGCCTTTTTCCTGTATTGTGACTCTTGAGTTTGTCGTTACACTTGTTTTGTTTAAACTTAAAAAGAAATGTGANGCAGCACATGTTGTCAAACTTTAAACCACCATGCCAAACCAATGAAGTCTGCACCCCAAGTGCTGTGCNAAGANGTCCCTTTNGGCATGTTGAATGGCTGGTTCTAACGCCCCAATTTAAAACTGTGTGTGGAACCNACCAGAATACTTGAANTTCGAGATTAACAACAAAATTGCCTGATAGTTCTTCACCTTTGGTCTGGTTACCAANGGCCTACAATGAAACCTGTNGTATGGCCTNTGGTAATTTGTTTGCCAACCATTGTTTGGACAANCTGGGAAGCCTGAAATGGTTTTGNAAGAACANATTCCCCTCTAAGGNGTNTAAACNCAAAACCNAATGGGTTTGGTGTTGGAACCCTGACAACGTTTAATGGGTAAANAGCGCCGAATGGACAAAGTGGGTANAATTTTAATNTCCGCCTTTAAAACACAAGTTTCCGAAGACCGTTCCACTTTTGCCGTTGGGNNTTGGTATTGNGCCTGGNCCAGTTACCGTCCTTTTCTCCCAGCCCTTNACCCCATTTTCCCATTTTTTTGGCGACCCAAAATATGACACCAACAGTTTTATTGAAACNCNAGAGGTNANCCACGCGCACCCTGGGGTTNTAACCACCCCTGGGCGANTTTTGGACTTACATCAACATTCGGAAATCTAGGTGGCGAAGAAACAATGGTNACACAATAGTTGTGGCNCAGACACAAANTTCTATGGGTGCGGNGTTTGGGGTTTACACCCANGAGTGCCACGGNACAAACAACGGCAAANATTNGGAGGGCATTACCCTGGCGAAAGAAAGCAGACACCC]
[+] EMBL AL931376 [GCAGATTCGCCCGATGTTTCTTTTAGAGCCAGTGAAAAAATGGGAATGAAAAATCAGACATCAGTTCCTGGAAGTTGAAACAACAAAAATCCCAGAACACCACCAGTGACATGTGACAGTGAGTGTGATATGTCTCCTGTGTTTTATTTGTTCCCTGTATTGTTTTGGGTTTTCCTGTTTCCCTAGTGAAATGTGAATTCTTCTTGCTTTGGTTCTGATTCAGTTCTTCCAGTGTGTTGAGCTGCGTGTGTTGCCTTTTTCCTGTATTGTGACTCTTGAGTTTGTCGTTACACTTGTTTTGTTTAAACTTAAAAAGAAATGTGANGCAGCACATGTTGTCAAACTTTAAACCACCATGCCAAACCAATGAAGTCTGCACCCCAAGTGCTGTGCNAAGANGTCCCTTTNGGCATGTTGAATGGCTGGTTCTAACGCCCCAATTTAAAACTGTGTGTGGAACCNACCAGAATACTTGAANTTCGAGATTAACAACAAAATTGCCTGATAGTTCTTCACCTTTGGTCTGGTTACCAANGGCCTACAATGAAACCTGTNGTATGGCCTNTGGTAATTTGTTTGCCAACCATTGTTTGGACAANCTGGGAAGCCTGAAATGGTTTTGNAAGAACANATTCCCCTCTAAGGNGTNTAAACNCAAAACCNAATGGGTTTGGTGTTGGAACCCTGACAACGTTTAATGGGTAAANAGCGCCGAATGGACAAAGTGGGTANAATTTTAATNTCCGCCTTTAAAACACAAGTTTCCGAAGACCGTTCCACTTTTGCCGTTGGGNNTTGGTATTGNGCCTGGNCCAGTTACCGTCCTTTTCTCCCAGCCCTTNACCCCATTTTCCCATTTTTTTGGCGACCCAAAATATGACACCAACAGTTTTATTGAAACNCNAGAGGTNANCCACGCGCACCCTGGGGTTNTAACCACCCCTGGGCGANTTTTGGACTTACATCAACATTCGGAAATCTAGGTGGCGAAGAAACAATGGTNACACAATAGTTGTGGCNCAGACACAAANTTCTATGGGTGCGGNGTTTGGGGTTTACACCCANGAGTGCCACGGNACAAACAACGGCAAANATTNGGAGGGCATTACCCTGGCGAAAGAAAGCAGACACCC]
consensusID : consensus_7068#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 785 fasta sequence
[CCGCGGACGCGCCGGCGCCAGCAGGGCGTTTTGCTCGACACACCACACCGTAGAGGGAATTTCTAGTTTTCTTTTAGAGCCAGTGAAAAAAGGGAAGAAAAATCAGACATCAGTTCCTGGAAGTTGAAACAACAAAAATCCCAGAACACCCACCCAGGACAGGACAGGAGGGATAGTCTCCTGTGTTTTATTGTTCCCGTTTGTTTTGGGTTTTCCGTTTCCCTAGGAAAGGAATTCTTCTGCTTTTGTTTGATTCGGTTCTTCGAGTGTGTGCGTGCGTGTGTGCCTTTTTCCGTATGGATTGAGTTCTCTTACACTGTTTGTTAAATAAAAAAATAGGAGAAAGAGTGTAAATTAACACAGCAACAAAACAGCTCGCACCAGGTGGCAGAGTCCTGGCAGGAGCGTCACCCATAACGGGGACACAATCGATCAATAAAAAGCGAGTCTCCTGTTGTACAGCAAGACGGGGCTGTATGTTCACAGTGAACGACGAGTGAAATCTAGTACAACAGCGGGACGAGTAGTAGCAG-AAGTATATCCTCCATCACTCTGTGTGTGCGCTCTCTCCCTCTCTGCCATCATTACGTCGCGTCCGGTGTTTGTGGAAAGAAGGAAATGGTGTCAGCGAAGATGGTCGAACCGTTGATAGTGCTTCTGGTTTATTTTAATTGTGATTTAATATTTTACGTTAAAAATATCAATAAACATTAAAGTGTATCGTGGGAAACAGTGTGNTTACCTCCCTTTAATTAATACTACTACTAACTGCTGCTGCTACAATT]
[+] EMBL BM651874 [CCGCGGACGCGTGGGCGCCAGCAGGGCGTTTTGCTCGACACACCACACCGTAGAGGGAATTTCTAGTTTTCTTTTAGAGCCAGTGAAAAAAGGGAAGAAAAATCAGACATCAGTTCCTGGAAGTTGAAACAACAAAAATCCCAGAACACCCACCCAGGACAGGACAGGAGGGATAGTCTCCTGTGTTTTATTGTTCCCGTTTGTTTTGGGTTTTCCGTTTCCCTAGGAAAGGAATTCTTCTGCTTTTGTTTGATTCGGTTCTTCGAGTGTGTGCGTGCGTGTGTGCCTTTTTCCGTATGGATTGAGTTCTCTTACACTGTTTGTTAAATAAAAAAATAGGAGAAAGAGTGTAAATTAACACAGCAACAAAACAGCTCGCACCAGGTGGCAGAGTCCTGGCAGGAGCGTCACCCATAACGGGGACACAATCGATCAATAAAAAGCGAGTCTCCTGTTGTACAGCAAGACGGGGCTGTATGTTCACAGTGAACGACGAGTGAAATCTAGTACAACAGCGGGACGAGTAGTAGCAGAAAGTATATCCTCCATCACTCTGGGTGTG ]
[+] EMBL BM595637 [ CCGACGCCAGCAGGGCGTTTTGCTCGACACACCACACCGTAGAGGGAATTTCTAGTTTTCTTTTAGAGCCAGTGAAAAAAGGGAAGAAAAATCAGACATCAGTTCCTGGAAGTTGAAACAACAAAAATCCCAGAACACCCACCCAGGACAGGACAGGAGGGATAGTCTCCTGTGTTTTATTGTTCCCGTTTGTTTTGGGTTTTCCGTTTCCCTAGGAAAGGAATTCTTCTGCTTTTGTTTGATTCGGTTCTTCGAGTGTGTGCGTGCGTGTGTGCCTTTTTCCGTATGGATTGAGTTCTCTTACACTGTTTGTTAAATAAAAAAATAGGAGAAAGAGTGTAAATTAACACAGCAACAAAACAGCTCGCACCAGGTGGCAGAGTCCTGGCAGGAGCGTCACCCATAACGGGGACACAATCGATCAATAAAAAGCGAGTCTCCTGTTGTACAGCAAGACGGGGCTGTATGTTCACAGTGAACGACGAGTGAAATCTAGTACAACAGCGGGACGAGTAGTAGCAG AAGTATATCCTCCATCACTCTGTGTGTGCGCTCTCTCCCTCTCTGCCATCATTACGTCGCGTCCGGTGTTTGTGGAAAGAAGGAAATGGTGTCAGCGAAGATGGTCGAACCGTTGATAGTGCTTCTGGTTTATTTTAATTGTGATTTAATATTTTACGTTAAAAATATC ]
[+] EMBL BM613453 [ CCGACGCCAGCAGGGCGTTTTGCTCGACACACCACACCGTAGAGGGAATTTCTAGTTTTCTTTTAGAGCCAGTGAAAAAAGGGAAGAAAAATCAGACATCAGTTCCTGGAAGTTGAAACAACAAAAATCCCAGAACACCCACCCAGGACAGGACAGGAGGGATAGTCTCCTGTGTTTTATTGTTCCCGTTTGTTTTGGGTTTTCCGTTTCCCTAGGAAAGGAATTCTTCTGCTTTTGTTTGATTCGGTTCTTCGAGTGTGTGCGTGCGTGTGTGCCTTTTTCCGTATGGATTGAGTTCTCTTACACTGTTTGTTAAATAAAAAAATAGGAGAAAGAGTGTAAATTAACACAGCAACAAAACAGCTCGCACCAGGTGGCAGAGTCCTGGCAGGAGCGTCACCCATAACGGGGACACAATCGATCAATAAAAAGCGAGTCTCCTGTTGTACAGCAAGACGGGGCTGTATGTTCACAGTGAACGACGAGTGAAATCTAGTACAACAGCGGGACGAGTAGTAGCAG AAGTATATCCTCCATCACTCTGTGTGTGCGCTCTCTCCCTCTCTGCCATCATTACGTCGCGTCCGGTGTTTGTGGAAAGAAGGAAATGGTGTCAGCGAAGATGGTCGAACCGTTGATAGTGCTTCTGGTTTATTTTAATTG ]
[+] EMBL BX621501 [ cacgaGGCGCCAGCAGGGCGTTTTGCTCGACACACCACACCGTAGAGGGAATTTCTAGTTTTCTTTTAGAGCCAGTGAAAAAAGGGAAGAAAAATCAGACATCAGTTCCTGGAAGTTGAAACAACAAAAATCCCAGAACACCCACCCAGGACAGGACAGGAGGGATAGTCTCCTGTGTTTTATTGTTCCCGTTTGTTTTGGGTTTTCCGTTTCCCTAGGAAAGGAATTCTTCTGCTTTTGTTTGATTCGGTTCTTCGAGTGTGTGCGTGCGTGTGTGCCTTTTTCCGTATGGATTGAGTTCTCTTACACTGTTTGTTAAATAAAAAAATAGGAGAAAGAGTGTAAATTAACACAGCAACAAAACAGCTCGCACCAGGTGGCAGAGTCCTGGCAGGAGCGTCACCCATAACGGGGACACAATCGATCAATAAAAAGCGAGTCTCCTGTTGTACAGCAAGACGGGGCTGTATGTTCACAGTGAACGACGAGTGAAATCTAGTACAACAGCGGGACGAGTAGTAGCAG AAGTATATCCTCCATCACTCTGTGTGTGCGCTCTCTCCCTCTCTGCCATCATTACGTCGCGTCCGGTGTTTGTGGAAAGAANGAAATGGTGTCAGCGAAGATGGTCGAACCGTTGATAGTGCTTCTGGTTTATTTTAATTGTGATTTAATATTTTACGTTAAAAATATCAATAAACATTAAAGTGTATCGTGGGAAACAGTGTGNTTACCTCCCTTTAATTAATACTACTACTAACTGCTGCTGCTACAATT]
consensusID : consensus_7068#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence
[AATCGNCNCGAGGAAAAAAAAGGAAAAAGTGTAATTAACACAGCAACAAGAGTTCGCACCAGGCGGCAGAGTCTTGGCCGGAGCGTCACCCATAACGGGGACACAATCGATCAATAAAAAGCGAGTCTCCTGCTGTACAGCAAGACGGGGCTGTATGTTCACAGTGAACGACGAGTGAAATCTAGTACAACAGTGGGACGAGTAGTAGCAGAAGTATATCCTACATCACTCTGTGTGTGCGCTCTCTCCCTCTCTGCCATCATTACGTCGCGTCCGGTGTTTGTGGAAAGAAGGAAATGGTGTCAGCGAAGATGGTCGAACCGTTGATAGTGCTTCTGGTTTATTTTAATTGTGATTTAATATTTTACGTTAAAAATATCAATAAACATTAAAGTGTATCGTGGGAACAGTGTGTTTACCTCCCTTTAATCAATACTACTACTAACTGCTGCTGCTACAAGCTACTACTACCGCCCACTACCCATTCCGAATAAGCTCTACAACCCGTACAGAGAAGCCAAAGAGGATACGGTACGAGGAAAACCCTGAAGGTCATCAGGGGAATATAAACATAGACGACATACTGCACAGTTGATAGCGAC]
[+] EMBL AL934647 [AATCGNCNCGAGGAAAAAAAAGGAAAAAGTGTAATTAACACAGCAACAAGAGTTCGCACCAGGCGGCAGAGTCTTGGCCGGAGCGTCACCCATAACGGGGACACAATCGATCAATAAAAAGCGAGTCTCCTGCTGTACAGCAAGACGGGGCTGTATGTTCACAGTGAACGACGAGTGAAATCTAGTACAACAGTGGGACGAGTAGTAGCAGAAGTATATCCTACATCACTCTGTGTGTGCGCTCTCTCCCTCTCTGCCATCATTACGTCGCGTCCGGTGTTTGTGGAAAGAAGGAAATGGTGTCAGCGAAGATGGTCGAACCGTTGATAGTGCTTCTGGTTTATTTTAATTGTGATTTAATATTTTACGTTAAAAATATCAATAAACATTAAAGTGTATCGTGGGAACAGTGTGTTTACCTCCCTTTAATCAATACTACTACTAACTGCTGCTGCTACAAGCTACTACTACCGCCCACTACCCATTCCGAATAAGCTCTACAACCCGTACAGAGAAGCCAAAGAGGATACGGTACGAGGAAAACCCTGAAGGTCATCAGGGGAATATAAACATAGACGACATACTGCACAGTTGATAGCGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7068#1 CCGCGGACGCGCCGGCGCCAGCAGGGCGTTTTGCTCGACACACCACACCGTAGAGGGAAT 60
consensus_7068#2 ------------------------------------------------------------
consensus_7068#0 -------------GCAGATTCGCCCGATGTTTCTTTTAGAGCCAGTGAAAAAATGGGAAT 47
consensus_7068#1 TTCTAGTTTTCTTTTAGAGCCAGTGAAAAAAGGGAAGAAAAATCAGACATCAGTTCCTGG 120
consensus_7068#2 ------------------------------------------------------------
consensus_7068#0 GAAAAATCAGACATCAGTTCCTGGAAGTTGAAACAACAAAAATCCCAGAACACCACCAGT 107
consensus_7068#1 AAGTTGAAACAACAAAAATCCCAGAACACCCACCCAGGACAGGACAGGAGGGATAGTCTC 180
consensus_7068#2 ------------------------------------------------------------
consensus_7068#0 GACATGTGACAGTGAGTGTGATATGTCTCCTGTGTTTTATTTGTTCCCTGTATTGTTTTG 167
consensus_7068#1 CTGTGTTTTATTGTTCCCGTTTGTTTTGGGTTTTCCGTTTCCCTAGGAAAGGAATTCTTC 240
consensus_7068#2 ------------------------------------------------------------
consensus_7068#0 GGTTTTCCTGTTTCCCTAGTGAAATGTGAATTCTTCTTGCTTTGGTTCTGATTCAGTTCT 227
consensus_7068#1 TGCTTTTGTTTGATTCGGTTCTTCGAGTGTGTGCGTGCGTGTGTGCCTTTTTCCGTATGG 300
consensus_7068#2 ------------------------------------------------------------
consensus_7068#0 TCCAGTGTGTTGAGCTGCGTGTGTTGCCTTTTTCCTGTATTGTGACTCTTGAGTTTGTCG 287
consensus_7068#1 ATTGAGTTCTCTTACACTGTTTGTTAAATAAAAAAATAGGAGAAAGAGTGTAAA----TT 356
consensus_7068#2 -----------------AATCGNCNCGAGGAAAAAAAAGGAAAAAGTGT---AA----TT 36
consensus_7068#0 TTACACTTGTTTTGTTTAAACTTAAAAAGAAATGTGANGCAGCACATGTTGTCAAACTTT 347
* ** * * * ** * **
consensus_7068#1 AACACAGCA-ACAAAACAGCTCGCACCAGGTGGCAGAGTCCTG-GCAGGAGCGTCACCCA 414
consensus_7068#2 AACACAGCA-ACAAGA--GTTCGCACCAGGCGGCAGAGTCTTG-GCCGGAGCGTCACCCA 92
consensus_7068#0 AAACCACCATGCCAAACCAATGAAGTCTGCACCCCAAGTGCTGTGCNAAGANGTCCCTTT 407
** ** ** * * * * * * * *** ** ** *** *
consensus_7068#1 TAACGGGGACACAATCGATCAATAAAAAGCGAGTCTC---CTGT-TGTACAGCAAGACGG 470
consensus_7068#2 TAACGGGGACACAATCGATCAATAAAAAGCGAGTCTC---CTGC-TGTACAGCAAGACGG 148
consensus_7068#0 NGGCATGTTGAATGGCTGGTTCTAACGCCCCAATTTAAAACTGTGTGTGGAACCNACCAG 467
* * * * *** * * * * *** *** * * * *
consensus_7068#1 GG--CTGTATGTTCACAGTGAACGACGAG--TGAAATCTAGTACAACAG--CGGGACGAG 524
consensus_7068#2 GG--CTGTATGTTCACAGTGAACGACGAG--TGAAATCTAGTACAACAG--TGGGACGAG 202
consensus_7068#0 AATACTTGAANTTCGAGATTAACAACAAAATTGCCTGATAGTTCTTCACCTTTGGTCTGG 527
** * *** * *** ** * ** **** * ** ** * *
consensus_7068#1 TAGTAGCAGAAGTATATCCTCCATCACTCTGTGTGTGCGCTCTCTCCCTCTCTGCCA-TC 583
consensus_7068#2 TAGTAGCAGAAGTATATCCTACATCACTCTGTGTGTGCGCTCTCTCCCTCTCTGCCA-TC 261
consensus_7068#0 T--TACCAANGGCCTACAATGAAACCTGTNGTATGGCCTNTGGTAATTTGTTTGCCAACC 585
* ** ** * ** * * * ** ** * * * * ***** *
consensus_7068#1 ATTACGTCGC--GTCCGGTGTTTGTGGAA-------AGAAGGAAATGGTGTCAGCGAAGA 634
consensus_7068#2 ATTACGTCGC--GTCCGGTGTTTGTGGAA-------AGAAGGAAATGGTGTCAGCGAAGA 312
consensus_7068#0 ATTGTTTGGACAANCTGGGAAGCCTGAAATGGTTTTGNAAGAACANATTCCCCTCTAAGG 645
*** * * * ** ** ** *** * * * * * ***
consensus_7068#1 TGGTCGAACCGTTGA--TAGTGCTTCTGGTTT----ATTTTAATTGTGATTTA---ATAT 685
consensus_7068#2 TGGTCGAACCGTTGA--TAGTGCTTCTGGTTT----ATTTTAATTGTGATTTA---ATAT 363
consensus_7068#0 NGTNTAAACNCAAAACCNAATGGGTTTGGTGTTGGAACCCTGACAACGTTTAATGGGTAA 705
* *** * * ** * **** * * * * * ** * **
consensus_7068#1 TTTACGTTAAAAATATCAAT------AAACATTAAAGTGTATCGTGGGAAA-CAGTGTGN 738
consensus_7068#2 TTTACGTTAAAAATATCAAT------AAACATTAAAGTGTATCGTGGGAA--CAGTGTGT 415
consensus_7068#0 ANAGCGCCGAATGGACAAAGTGGGTANAATTTTAATNTCCGCCTTTAAAACACAAGTTTC 765
** ** * ** ** **** * * * ** ** *
consensus_7068#1 TTACCTCCCTTTAATTAATACTACTACTAACTGCTGCTGCTACAATT------------- 785
consensus_7068#2 TTACCTCCCTTTAATCAATACTACTACTAACTGCTGCTGCTACAAGCT--ACTACTACCG 473
consensus_7068#0 CGAAGACCGTTCCACTTTTGCCGTTGGGNNTTGGTATTGNGCCTGGNCCAGTTACCGTCC 825
* ** ** * * * * ** * ** *
consensus_7068#1 ------------------------------------------------------------
consensus_7068#2 CCCACTACCCATTCCGAATAA-GCTCTACAACCCGTACAGAGAAGCCAAAGAGGATAC-- 530
consensus_7068#0 TTTTCTCCCAGCCCTTNACCCCATTTTCCCATTTTTTTGGCGACCCAAAATATGACACCA 885
consensus_7068#1 ------------------------------------------------------------
consensus_7068#2 --GGTACGAGGAAAACCCTGAAGGTCATCAG----------GGGAATATAAACATAGACG 578
consensus_7068#0 ACAGTTTTATTGAAACNCNAGAGGTNANCCACGCGCACCCTGGGGTTNTAACCACCCCTG 945
consensus_7068#1 ------------------------------------------------------------
consensus_7068#2 ACATACTGCACAGTTGATAGCGAC------------------------------------ 602
consensus_7068#0 GGCGANTTTTGGACTTACATCAACATTCGGAAATCTAGGTGGCGAAGAAACAATGGTNAC 1005
consensus_7068#1 ------------------------------------------------------------
consensus_7068#2 ------------------------------------------------------------
consensus_7068#0 ACAATAGTTGTGGCNCAGACACAAANTTCTATGGGTGCGGNGTTTGGGGTTTACACCCAN 1065
consensus_7068#1 ------------------------------------------------------------
consensus_7068#2 ------------------------------------------------------------
consensus_7068#0 GAGTGCCACGGNACAAACAACGGCAAANATTNGGAGGGCATTACCCTGGCGAAAGAAAGC 1125
consensus_7068#1 --------
consensus_7068#2 --------
consensus_7068#0 AGACACCC 1133
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||