cluster # 7096

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Anopheles gambiae
cluster # 7096 cluster # 7096 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7096#0 length = 877 sequences # 2

consensus_7096#1 length = 511 sequences # 4

consensusID : consensus_7096#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 877
fasta sequence

                              [ATCGCCCGAGTNCAGAACATATCCAGTCGTACGTGCGATAAAATGCCGGAATCGCAAGGAAAAAGGGGTGCCTTTATCGTGCTGGAAGGATGTGATCGCACCGGCAAAACGACGCAAGTGCAAAACGCTGGTTGACAAATTGATGCAGGTGAACATACGAGCCCAGTACATGAACTTTCCGGACCGATCAACCCGAGATGCGGTCAGCCTCATAAATGGTTATCTGACTGCGCAAAGACAGACTTCACGGACGAGGGCATCCATCTGCTGTATACGCTGTAATCGCTGGGAACGGATGAAGGAGATGGAGAAGCTGCTGAAGGGCTGGCGTCAACCTGATCGTTGACCGGTACTCCTACTCGGGNCGTTGCATTCAGACTAGTGCCAAGGGCTCTCGATATGGAATGGTGCGAAAGCGCCCGAGTCGGGGCTGCGTGAAGCCCGACCTCGTGATACTGTCTTACTCTGTCGATGGATGCTCTGNGCGCAGGCGCGGGGGCTTCGGTGACCGAGCGGTTATGAAGTGGCCGGCTTTCAGAAGAAGGTGATGGAGCGGTATGGCNTGCTGAAGGATGACCGCTACTGGAAAGCGATTGACGCCGATAAGACATTCGACGATGTTACCGCAGTTCTTTACGAGGAGGTGCTACGTGCAATTGAACATTCCGGCGACAAGCCGTTAGAGAAGTTATGGTAAATGTTGTCCATGTCCCCGCAACGGTATGCATCGTGCATTTAAGATAAGCTTATAAAGTGTTAAAATTGTAATAAGAAGACCATGTTGCATGTAGAACCAAAAGATGCAGAGAAGTTCGTTATCATATACGATGTTTGAAATACATTTTTAAGGAAAGGTGAAGTTGAATTGATAAAAAAA]

[+] EMBL AL930293             [ATCGCCCGAGTNCAGAACATATCCAGTCGTACGTGCGATAAAATGCCGGAATCGCAAGGAAAAAGGGGTGCCTTTATCGTGCTGGAAGGATGTGATCGCACCGGCAAAACGACGCAAGTGCAAAACGCTGGTTGACAAATTGATGCAGGTGAACATACGAGCCCAGTACATGAACTTTCCGGACCGATCAACCCGAGATGCGGTCAGCCTCATAAATGGTTATCTGACTGCGCAAAGACAGACTTCACGGACGAGGGCATCCATCTGCTGTATACGCTGTAATCGCTGGGAACGGATGAAGGAGATGGAGAAGCTGCTGAAGGGCTGGCGTCAACCTGATCGTTGACCGGTACTCCTACTCGGGNCGTTGCATTCAGACTAGTGCCAAGGGCTCTCGATATGGAATGGTGCGAAAGCGCCCGAGTCGGGGCTGCGTGAAGCCCGACCTCGTGATACTGTCTTACTCTGTCGATGGATGCTCTGNGCGCAGGCGCGGGGGCTTCGGTGACCGAGCGGTTATGAAGTGGCCGGCTTTCAGAAGAAGGTGATGGAGCGGTATGGCNTGCTGAAGGATGAC                                                                                                                                                                                                                                                                                                            ]
[-] EMBL AGA280480            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GGATGCTCTG GCG AGGCGCGGGGGCTTCGGTGA CGAGCGG TATGAAGTGGCCGGCTTTCAGAAGAAGGTGATTGAGCGGTATGGCATGCTGAAGGATGACCGCTACTGGAAAGCGATTGACGCCGATAAGACATTCGACGATGTTACCGCAGTTCTTTACGAGGAGGTGCTACGTGCAATTGAACATTCCGGCGACAAGCCGTTAGAGAAGTTATGGTAAATGTTGTCCATGTCCCCGCAACGGTATGCATCGTGCATTTAAGATAAGCTTATAAAGTGTTAAAATTGTAATAAGAAGACCATGTTGCATGTAGAACCAAAAGATGCAGAGAAGTTCGTTATCATATACGATGTTTGAAATACATTTTTAAGGAAAGGTGAAGTTGAATTGATAAAAAAA]




>consensus_7096#0
ATCGCCCGAGTNCAGAACATATCCAGTCGTACGTGCGATAAAATGCCGGAATCGCAAGGA
AAAAGGGGTGCCTTTATCGTGCTGGAAGGATGTGATCGCACCGGCAAAACGACGCAAGTG
CAAAACGCTGGTTGACAAATTGATGCAGGTGAACATACGAGCCCAGTACATGAACTTTCC
GGACCGATCAACCCGAGATGCGGTCAGCCTCATAAATGGTTATCTGACTGCGCAAAGACA
GACTTCACGGACGAGGGCATCCATCTGCTGTATACGCTGTAATCGCTGGGAACGGATGAA
GGAGATGGAGAAGCTGCTGAAGGGCTGGCGTCAACCTGATCGTTGACCGGTACTCCTACT
CGGGNCGTTGCATTCAGACTAGTGCCAAGGGCTCTCGATATGGAATGGTGCGAAAGCGCC
CGAGTCGGGGCTGCGTGAAGCCCGACCTCGTGATACTGTCTTACTCTGTCGATGGATGCT
CTGNGCGCAGGCGCGGGGGCTTCGGTGACCGAGCGGTTATGAAGTGGCCGGCTTTCAGAA
GAAGGTGATGGAGCGGTATGGCNTGCTGAAGGATGACCGCTACTGGAAAGCGATTGACGC
CGATAAGACATTCGACGATGTTACCGCAGTTCTTTACGAGGAGGTGCTACGTGCAATTGA
ACATTCCGGCGACAAGCCGTTAGAGAAGTTATGGTAAATGTTGTCCATGTCCCCGCAACG
GTATGCATCGTGCATTTAAGATAAGCTTATAAAGTGTTAAAATTGTAATAAGAAGACCAT
GTTGCATGTAGAACCAAAAGATGCAGAGAAGTTCGTTATCATATACGATGTTTGAAATAC
ATTTTTAAGGAAAGGTGAAGTTGAATTGATAAAAAAA

consensusID : consensus_7096#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 511
fasta sequence

                              [CCGCCCACGCGTCCGCAACTTGCCAAATTGCTGTCGGCACAAGTGCGCCAAAATACC-AGAACCATATCCAGTCGTACGTTCGATAAAATGCCGG-AATCGCAAGGAAAAAGGGGTGCCTTTATCGTGCTGGAAGGATGTGATCGCACCGGCAAAACGACGCAATGCAAAACGCTGGTTGACAAATTGATGCAGGTGAACATACGAGCCCAGTACATGAACTTTCCGGACCGATCAACCCAGTGCGGTCAGCTGATAAATGGTTATCTGACGCGCAAAGACGACTTCACGGACGAGGGCATCCATCTGCTGTTTACGCTGAATCGCTGGGAACGGATGAAGGAGATGGAGAAGCTGCTGAAGGCTGGCGTCAACCTGATCGTTGACCGGTACTCCTACTCGGGCGTTGCATTCAGCAGTGCCAAGGGTCTCGATATGGAATGGTGCAAAGCGCCCGAGTCGGGGCTGCTGAAGCCCGACCTCGTGATACTGCTTACTCTGTCGATGGATGCTC]

[+] EMBL BM603359             [CCGCCCACGCGTCCGCAACTTGCCAAATTGCTGTCGGCACAAGTGCGCCAAAATACC AGAACCATATCCAGTCGTACGTTCGATAAAATGCCGG AATCGCAAGGAAAAAGGGGTGCCTTTATCGTGCTGGAAGGATGTGATCGCACCGGCAAAACGACGCAATGCAAAACGCTGGTTGACAAATTGATGCAGGTGAACATACTAGCCCAGTACATGAACTTTCCGGACCGATCAACCCAGTGCGGTCAGCTGATAAATGGTTATCTGACGCGCAAAGACGACTTCACGGACGAGGGCATCCATCTGCTGTTTACGCTGAATCGCTGGGAACGGATGAAGGAGATGGAGAAGCTGCTGAAGGCTGGCGTCAACCTGATCGTTGACCGGTACTCCTACTCGGGCGTTGCATTCAGCAGTGCCAAGGGTCTCGATATGGAATGGTGCAAAGCGCCCGAGTCGGGGCTGCTGAAGCCCGACCTCGTGATACTGCTTACTCTGTCGATGGATGC  ]
[+] EMBL BM643601             [                                ccgGGCACAAGTGCGCCAAAATACCAAGAACCATATCCAGTCGTACGTTCGATAAGATGCCGGTAATCGCAAGGAAAAAGGGGTGCCTTTATCGTGCTGGAAGGATGTGATCGCACCGGCAAAACGACGCAATGCAAAACGCTGGTTGACAAATTGATGCAGGTGAACATACGAGCCCAGTACATGAACTTTCCGGACCGATCAACCCAGTGCGGTCAGCTGATAAATGGTTATCTGACGCGCAAAGACGACTTCACGGACGAGGGCATCCATCTGCTGTTTACACTGAATCGCTGGGAACGGATGAAGGATATGGAGAAGCTGCTGAAGGCTGGCGTCAACCTGATCGTTGACCGGTACTCCTACTCGGGCGTTGCATTCAACAGTGCCAAGGGTCTCGATATGGAATGGTGCAAAGCGCCCGAGTCGGGGCTGCTGAAGCCCGACCTCGTGATACTGCTTACTCTGTCGATGGATGCTC]
[+] EMBL AGA282184            [                                                                                                                                                               CGCAATGCAAAACGCTGGCTGACAAATTGATGCAGGTGAACATACGAGCCCAGTACATGAACTTTCCGGACCGATCAACCCAGTGCGGTCAGCTGATAAATGGTTATCTGACGCGCAAAGACGACTTCACGGACGAGGGCATCCATCTGCTGTTTACGCTGAATCGCTGGGAACGGATGAAGGAGATGGAGAAGCTGCTGAAGGCTGGCGTCAACCTGATCGTTGACCGGTACTCCTACTCGGGCGTTGCATTCAGCAGTGCCAAGGGTCTCGATATGGAATGGTGCAAAGCGCCCGAGTCGGGGCTGCTGAAGCCCGACCTCG                              ]
[+] EMBL BX624240             [                                                                                                                                                                  nATGCNAAACGCTGGTTGAC AATTGATGCAGGCGAACATACGGGCCCAGTACATGAACTTGCCGGACCGATCGACCCAGTGCGGTCAGCTGATAAATGGTTATCTGACGCGCAAAGACGACTTCACGGACGAGGGCATCCATCTGCTGTNTACGCTGAATCGCTGGGAACGGATGAAGGAGATGGAGAAGCTGCTGAAGGCGGGCGTCAACCTGATCGTNGATCGGTACTCCTACTCG                                                                                                                ]




>consensus_7096#1
CCGCCCACGCGTCCGCAACTTGCCAAATTGCTGTCGGCACAAGTGCGCCAAAATACCAGA
ACCATATCCAGTCGTACGTTCGATAAAATGCCGGAATCGCAAGGAAAAAGGGGTGCCTTT
ATCGTGCTGGAAGGATGTGATCGCACCGGCAAAACGACGCAATGCAAAACGCTGGTTGAC
AAATTGATGCAGGTGAACATACGAGCCCAGTACATGAACTTTCCGGACCGATCAACCCAG
TGCGGTCAGCTGATAAATGGTTATCTGACGCGCAAAGACGACTTCACGGACGAGGGCATC
CATCTGCTGTTTACGCTGAATCGCTGGGAACGGATGAAGGAGATGGAGAAGCTGCTGAAG
GCTGGCGTCAACCTGATCGTTGACCGGTACTCCTACTCGGGCGTTGCATTCAGCAGTGCC
AAGGGTCTCGATATGGAATGGTGCAAAGCGCCCGAGTCGGGGCTGCTGAAGCCCGACCTC
GTGATACTGCTTACTCTGTCGATGGATGCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7096#0      -------------------------------------------ATCGCCCGAGTNC-AGA 16
consensus_7096#1      CCGCCCACGCGTCCGCAACTTGCCAAATTGCTGTCGGCACAAGTGCGCCAAAATACCAGA 60
                                                                   ****  * * * ***

consensus_7096#0      AC-ATATCCAGTCGTACGTGCGATAAAATGCCGGAATCGCAAGGAAAAAGGGGTGCCTTT 75
consensus_7096#1      ACCATATCCAGTCGTACGTTCGATAAAATGCCGGAATCGCAAGGAAAAAGGGGTGCCTTT 120
                      ** **************** ****************************************

consensus_7096#0      ATCGTGCTGGAAGGATGTGATCGCACCGGCAAAACGACGCAAGTGCAAAACGCTGGTTGA 135
consensus_7096#1      ATCGTGCTGGAAGGATGTGATCGCACCGGCAAAACGACGCAA-TGCAAAACGCTGGTTGA 179
                      ****************************************** *****************

consensus_7096#0      CAAATTGATGCAGGTGAACATACGAGCCCAGTACATGAACTTTCCGGACCGATCAACCCG 195
consensus_7096#1      CAAATTGATGCAGGTGAACATACGAGCCCAGTACATGAACTTTCCGGACCGATCAACCCA 239
                      *********************************************************** 

consensus_7096#0      AGATGCGGTCAGCCTCATAAATGGTTATCTGACTGCGCAAAGACAGACTTCACGGACGAG 255
consensus_7096#1      G--TGCGGTCAGC-TGATAAATGGTTATCTGAC-GCGCAAAGAC-GACTTCACGGACGAG 294
                         ********** * ***************** ********** ***************

consensus_7096#0      GGCATCCATCTGCTGTATACGCTGTAATCGCTGGGAACGGATGAAGGAGATGGAGAAGCT 315
consensus_7096#1      GGCATCCATCTGCTGTTTACGCTG-AATCGCTGGGAACGGATGAAGGAGATGGAGAAGCT 353
                      **************** ******* ***********************************

consensus_7096#0      GCTGAAGGGCTGGCGTCAACCTGATCGTTGACCGGTACTCCTACTCGGGNCGTTGCATTC 375
consensus_7096#1      GCTGAAGG-CTGGCGTCAACCTGATCGTTGACCGGTACTCCTACTCGGGC-GTTGCATTC 411
                      ******** ****************************************  *********

consensus_7096#0      AGACTAGTGCCAAGGGCTCTCGATATGGAATGGTGCGAAAGCGCCCGAGTCGGGGCTGCG 435
consensus_7096#1      AG--CAGTGCCAAGGG-TCTCGATATGGAATGGTGC-AAAGCGCCCGAGTCGGGGCTGC- 466
                      **   *********** ******************* ********************** 

consensus_7096#0      TGAAGCCCGACCTCGTGATACTGTCTTACTCTGTCGATGGATGCTCTGNGCGCAGGCGCG 495
consensus_7096#1      TGAAGCCCGACCTCGTGATACTG-CTTACTCTGTCGATGGATGCTC-------------- 511
                      *********************** **********************              

consensus_7096#0      GGGGCTTCGGTGACCGAGCGGTTATGAAGTGGCCGGCTTTCAGAAGAAGGTGATGGAGCG 555
consensus_7096#1      ------------------------------------------------------------
                                                                                  

consensus_7096#0      GTATGGCNTGCTGAAGGATGACCGCTACTGGAAAGCGATTGACGCCGATAAGACATTCGA 615
consensus_7096#1      ------------------------------------------------------------
                                                                                  

consensus_7096#0      CGATGTTACCGCAGTTCTTTACGAGGAGGTGCTACGTGCAATTGAACATTCCGGCGACAA 675
consensus_7096#1      ------------------------------------------------------------
                                                                                  

consensus_7096#0      GCCGTTAGAGAAGTTATGGTAAATGTTGTCCATGTCCCCGCAACGGTATGCATCGTGCAT 735
consensus_7096#1      ------------------------------------------------------------
                                                                                  

consensus_7096#0      TTAAGATAAGCTTATAAAGTGTTAAAATTGTAATAAGAAGACCATGTTGCATGTAGAACC 795
consensus_7096#1      ------------------------------------------------------------
                                                                                  

consensus_7096#0      AAAAGATGCAGAGAAGTTCGTTATCATATACGATGTTTGAAATACATTTTTAAGGAAAGG 855
consensus_7096#1      ------------------------------------------------------------
                                                                                  

consensus_7096#0      TGAAGTTGAATTGATAAAAAAA 877
consensus_7096#1      ----------------------