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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7100#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1023 fasta sequence
[GAAGCACTCACTACAAGAATGCTGCATTTTTACACGCACGAACACACACACACACACACACACTCACGTACCCATACCGTTACAGTTGAAGCACTTTTGAAGCACACGCAGTCATAGCTCCTCCCATAGTGCACACGTGCATGCACTTTTGTTAGAAGTTTACCATTTACTTAGAGTTTGGAGTTAGAGTAGTGCATCAGTGTTACTGTATCGTTCGAACGATCGAAAACTATTCAGCCAGAAAGCCGTAAACTGCGTGCCATCATGTACGATTATTTTAATCTTTTTTTGTGGTATCGAAATTCTAAGTAGGTGAAGTAGTTGTTGTTTTCCGATATACCGTTTGTTTGCTTGTATTTCAACGCTCTAGTGGTAGTCGTTTGAACTGTTTCCTCACCCTATT-TTGTCTCGGTAGGGTAACATT-CTGATGTTCTCTGCTCCAACTTTTCATC-TTTTCTGTTGTTTTAGTTTCATCAG-TTTCAACGAACACAT-AAAACAAACCTT-GTGT-TTCGGTGAACCAGGCGAG-AGTTTGTGTCTAGTCAT-AAAGCTTAGGTACTACTGC-AAT-GGAAGAT-CCAGTTC-ATTC-AATGGTTTTTAACTTCGAAAAAAGAACAC-ATGTTTGAAAGTTCTTCTTGAAGCCATCAAATCCATTGTTCTAGCGATTTGAGAGATCGAAAGCTTAAAGCAAATGATATAAAAAAGAGCAAACGAATTTCGACGAACTTATGGATCATTAGCAAAATTGATTTTTTTTACGTTAGTAACGTTATCTCGTATCGTGTTCTCCTTTCAACTAGTTGACTGTTTTTTTGTTTTAAGTTTCTGTTTTTTGGTTTAATTTTTTTGTCGTCATTTATCTATCTGTTTAGCCGTTACGAGTAGTGAGAGAAGAGGGAGAATGAAGCAAATAAGTTATTGAACAAATTCGAACACTTCGAGAGAGAAAAAGGGTGAACGTGTAATTTTACAAGAAAAGAAATATATAGTTGCATTATTGATAATCAAAAAAAACCCACGCGTCCGCGG]
[+] EMBL BX609053 [GAAGCACTCACTACAAGAATGCTGCATTTTTACACGCACGAACACACACACACACACACACACTCACGTACCCATACCGTTACAGTTGAAGCACTTTTGAAGCACACGCAGTCATAGCTCCTCCCATAGTGCACACGTGCATGCACTTTTGTTAGAAGTTTACCATTTACTTAGAGTTTGGAGTTAGAGTAGTGCATCAGTGTTACTGTATCGTTCGAACGATCGAAAACTATTCAGCCAGAAAGCCGTAAACTGCGTGCCATCATGTACGATTATTTTAATCTTTTTTTGTGGTATCGAAATTCTAAGTAGGTGAAGTAGTTGTTGTTTTCCGATATACCGTTTGTTTGCTTGTATTTCAACGCTCTAGTGGTAGTCGTTTGAACTGTTTCCTCACCCTATT TTGTCTCGGTAGGGTAACATT CTGATGTTCTCTGCTCCAACTTTTCATC TTTTCTGTTGTTTTAGTTTCATCAG TTTCAACGAACACAT AAAACAAACCTT GTGT TTCGGTGAACCAGGCGAG AGTTTGTGTCTAGTCAT AAAGCTTAGGTACTACTGC AAT GGAAGAT CCAGTTC ATTC AATGGTTTTTAACTTCGAAAAAAGAACAC ATGTTTGAAAGTTCTTCTTGAAGCCATCAAATCCATTGTTCTAGCGATTTGAGAGATCGAAAGCTTAAAGCAAATGATATAAAAAAGAGCAAACGAATTTCGACGAACTT ]
[+] EMBL BX618037 [GAAGCACTCACTACAAGAATGCTGCATTTTTACACGCACGAACACACACACACACACACACACTCACGTACCCATACCGTTACAGTTGAAGCACTTTTGAAGCACACGCAGTCATAGCTCCTCCCATAGTGCACACGTGCATGCACTTTTGTTAGAAGTTTACCATTTACTTAGAGTTTGGAGTTAGAGTAGTGCATCAGTGTTACTGTATCGTTCGAACGATCGAAAACTATTCAGCCAGAAAGCCGTAAACTGCGTGCCATCATGTACGATTATTTTAATCTTTTTTTGTGGTATCGAAATTCTAAGTAGGTGAAGTAGTTGTTGTTTTCCGATATACCGTTTGTTTGCTTGTATTTCAACGCTCTAGTGGTAGTCGTTTGAACTGTTTCCTCACCCTATT TTGTCTCGGTAGGGTAACATT CTGATGTTCTCTGCTCCAACTTTTCATC TTTTCTGTTGTTTTAGTTTCATCAG TTTCAACGAACACAT AAAACAAACCTT GTGT TTCGGTGAACCAGGCGAG AGTTTGTGTCTAGTCAT AAAGCTTAGGTACTACTGC AAT GGAAGAT CCAGTTC ATTC AATGGTTTTTAACTTCGAAAAAATAACACAATGTTTGAAAGTTCTTCTTGAAGCCATCAAATCCATTGTTCTAGCGATTTGAGAGATCGAAAGCTTTAAG ]
[+] EMBL BX619115 [ AAGAATGCTGCATTTTTACACGCACGAACACACACACACACACACACACTCACGTACCCATACCGTTACAGTTGAAGCACTTTTGAAGCACACGCAGTCATAGCTCCTCCCATAGTGCACACGTGCATGCACTTTTGTTAGAAGTTTACCATTTACTTAGAGTTTGGAGTTAGAGTAGTGCATCAGTGTTACTGTATCGTTCGAACGATCGAAAACTATTCAGCCAGAAAGCCGTAAACTGCGTGCCATCATGTACGATTATTTTAATCTTTTTTTGTGGTATCGAAATTCTAAGTAGGTGAAGTAGTTGTTGTTTTCCGATATACCGTTTGTTTGCTTGTATTTCAACGCTCTAGTGGTAGTCGTTTGAACTGTTTCCTCACCCTATTNTTGTCTCGGTAGGGTAACATTCCTGATGTTCTCTGCTCCAACTTTTCATCTTTTTCTGTTGTTTTAGTTTNATCAGTTTTCAACGAACACATAAAAACAAACCTTGGTGTNTTCGGTGAACCAGGCGAGNAGTNTGTGTCTAGTCATAAAAGCTAGGGTACTACTGCAAATGGGAAGATCCCAGTTCAATTCNAATGGgt ]
[-] EMBL BM620726 [ T CTGATGTTCTCTGCTCCAACTTTTCATC TTTTCTGTTGTTTTAGTTTCATCAG TTTCAACGAACACAT AAAACAAACCTT GTGT TTCGGTGAACCAGGCGAG AGTTTGTGTCTAGTCAT AAAGCTTAGGTACTACTGC AAT GGAAGAT CCAGTTC ATTC AATGGTTTTTAACTTCGAAAAAAGAACAC ATGTTTGAAAGTTCTTCTTGAAGCCATCAAATCCATTGTTCTAGCGATTTGAGAGATCGAAAGCTTAAAGCAAATGATATAAAAAAGAGCAAACGAATTTCGACGAACTTATGGATCATTAGCAAAATTGATTTTTTTTACGTTAGTAACGTTATCTCGTATCGTGTTCTCCTTTCAACTAGTTGACTGTTTTTTTGTTTTAAGTTTCTGTTTTTTGGTTTAATTTTTTTGTCGTCATTTATCTATCTGTTTAGCCGTTACGAGTAGTGAGAGAAGAGGGAGAATGAAGCAAATAAGTTATTGAACAAATTCGAACACTTCGAGAGAGAAAAAGGGTGAACGTGTAATTTTACAAGAAAAGAAATATATAGTTGCATTATTGATAATCAAAAAAAACCCACGCGTCCGCGG]
[+] EMBL BM635797 [ ccgCTGC AAT GGAAGAT CCAGTTC ATTC AATGGTTTTTAACTTCGAAAAAAGAACAC ATGTTTGAAAGTTCTTCTTGAAGCCATCAAATCCATTGTTCTAGCGATTTGAGAGATCGAAAGCTTAAAGCAAATGATATAAAAAAGAGCAAACGAATTTCGACGAACTTATGGATCATTAGCAAAATTGATTTTTTTTACGTTAGTAACGTTATCTCGTATCATGTTCTCCTTTCAACTAGTTGACTGTTTTTTTGTTTTAAGTTTCTGTTTTTTGGTTTAATTTTTTTGTCGTCATTTATCTATCTGTTTAGCCGTTACGAGTAGTGAGAGAAGAGGGAGAATGAAGCAAATAAGTTATTGAACAAATTCGAACATTTCGAGAGAGAAAAAGGGTGAACGTGTAATTTTACAAG ]
consensusID : consensus_7100#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence
[TACGTTCATAANAGCCTTACGGTTACTACCTGCCAAATGGAAGATCCAGTTCATGTCAATGGCTTTTCAACCTTCGCCATCAACAGNCACACATGCTTTGAAAGCTTGCTTCTTGAAGCCATCAAATCCACTTGTTCNAGCGATTTGAGAGACTCGAAAGCTTAAAGCAAATGATATCGAACAACAGAGCACAACGAATTTCGACGAACTTATGGATCATTAGCAAAACTTGATTCTCTTTTTACGTTAGTAACGTTATCTCGTATCATGTTCTCCTTTCAACTAGTTGACTGTTTTTTTGTTTTAAGTTTCTGTTTTTTGGTTTAATTTTTTTGTCGTCATTTATCTATCTGTTTAGCCGTTACGAGTAGTGAGAGAAGAGGGAGAATGAAGCAAATAAGTTATTGAACAAATTCGAACACTTCGAGAGAGAAAAAGGGTGAAACGTGTAATTTTAACAAGAAAAGAAATATATAGTTGCATTATTGATAATCAATCGATCGGGAAAAGAGAAAAAAAAAAAAAAAAATCATCGTGCCGATTCTTG]
[-] EMBL BX469837 [TACGTTCATAANAGCCTTACGGTTACTACCTGCCAAATGGAAGATCCAGTTCATGTCAATGGCTTTTCAACCTTCGCCATCAACAGNCACACATGCTTTGAAAGCTTGCTTCTTGAAGCCATCAAATCCACTTGTTCNAGCGATTTGAGAGACTCGAAAGCTTAAAGCAAATGATATCGAACAACAGAGCACAACGAATTTCGACGAACTTATGGATCATTAGCAAAACTTGATTCTCTTTTTACGTTAGTAACGTTATCTCGTATCATGTTCTCCTTTCAACTAGTTGACTGTTTTTTTGTTTTAAGTTTCTGTTTTTTGGTTTAATTTTTTTGTCGTCATTTATCTATCTGTTTAGCCGTTACGAGTAGTGAGAGAAGAGGGAGAATGAAGCAAATAAGTTATTGAACAAATTCGAACACTTCGAGAGAGAAAAAGGGTGAAACGTGTAATTTTAACAAGAAAAGAAATATATAGTTGCATTATTGATAATCAATCGATCGGGAAAAGAGAAAAAAAAAAAAAAAAATCATCGTGCCGATTCTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7100#0 GAAGCACTCACTACAAGAATGCTGCATTTTTACACGCACGAACACACACACACACACACA 60
consensus_7100#1 ------------------------------------------------------------
consensus_7100#0 CACTCACGTACCCATACCGTTACAGTTGAAGCACTTTTGAAGCACACGCAGTCATAGCTC 120
consensus_7100#1 ------------------------------------------------------------
consensus_7100#0 CTCCCATAGTGCACACGTGCATGCACTTTTGTTAGAAGTTTACCATTTACTTAGAGTTTG 180
consensus_7100#1 ------------------------------------------------------------
consensus_7100#0 GAGTTAGAGTAGTGCATCAGTGTTACTGTATCGTTCGAACGATCGAAAACTATTCAGCCA 240
consensus_7100#1 ------------------------------------------------------------
consensus_7100#0 GAAAGCCGTAAACTGCGTGCCATCATGTACGATTATTTTAATCTTTTTTTGTGGTATCGA 300
consensus_7100#1 ------------------------------------------------------------
consensus_7100#0 AATTCTAAGTAGGTGAAGTAGTTGTTGTTTTCCGATATACCGTTTGTTTGCTTGTATTTC 360
consensus_7100#1 ------------------------------------------------------------
consensus_7100#0 AACGCTCTAGTGGTAGTCGTTTGAACTGTTTCCTCACCCTATTTTGTCTCGGTAGGGTAA 420
consensus_7100#1 ------------------------------------------------------------
consensus_7100#0 CATTCTGATGTTCTCTGCTCCAACTTTTCATCTTTTCTGTTGTTTTAGTTTCATCAGTTT 480
consensus_7100#1 ------------------------------------------------------------
consensus_7100#0 CAACGAACACATAAAACAAACCTTGTGTTTCGGTGAACCAGGCGAGAGTTTGTGTCTAGT 540
consensus_7100#1 --------------------------------------------TACGTTCATAAN-AGC 15
*** * **
consensus_7100#0 CATAAAGCTTAGGTACTACTGCAATGGAAGATCCAGTTCAT-TCAATGGTTTTTAA--CT 597
consensus_7100#1 CTTACGGTT--ACTACCTGCCAAATGGAAGATCCAGTTCATGTCAATGGCTTTTCAACCT 73
* ** * * *** ******************* ******* **** * **
consensus_7100#0 TCGA----AAAAAGAACACATG-TTTGAAAGTT--CTTCTTGAAGCCATCAAATCCA-TT 649
consensus_7100#1 TCGCCATCAACAGNCACACATGCTTTGAAAGCTTGCTTCTTGAAGCCATCAAATCCACTT 133
*** ** * ******* ******** * ********************** **
consensus_7100#0 GTTCTAGCGATTTGAGAGA-TCGAAAGCTTAAAGCAAATGATAT---AAAAAAGAGCA-A 704
consensus_7100#1 GTTCNAGCGATTTGAGAGACTCGAAAGCTTAAAGCAAATGATATCGAACAACAGAGCACA 193
**** ************** ************************ * ** ****** *
consensus_7100#0 ACGAATTTCGACGAACTTATGGATCATTAGCAAAA-TTGATTTT--TTTTACGTTAGTAA 761
consensus_7100#1 ACGAATTTCGACGAACTTATGGATCATTAGCAAAACTTGATTCTCTTTTTACGTTAGTAA 253
*********************************** ****** * **************
consensus_7100#0 CGTTATCTCGTATCGTGTTCTCCTTTCAACTAGTTGACTGTTTTTTTGTTTTAAGTTTCT 821
consensus_7100#1 CGTTATCTCGTATCATGTTCTCCTTTCAACTAGTTGACTGTTTTTTTGTTTTAAGTTTCT 313
************** *********************************************
consensus_7100#0 GTTTTTTGGTTTAATTTTTTTGTCGTCATTTATCTATCTGTTTAGCCGTTACGAGTAGTG 881
consensus_7100#1 GTTTTTTGGTTTAATTTTTTTGTCGTCATTTATCTATCTGTTTAGCCGTTACGAGTAGTG 373
************************************************************
consensus_7100#0 AGAGAAGAGGGAGAATGAAGCAAATAAGTTATTGAACAAATTCGAACACTTCGAGAGAGA 941
consensus_7100#1 AGAGAAGAGGGAGAATGAAGCAAATAAGTTATTGAACAAATTCGAACACTTCGAGAGAGA 433
************************************************************
consensus_7100#0 AAAAGGGTGAA-CGTGTAATTTTA-CAAGAAAAGAAATATATAGTTGCATTATTGATAAT 999
consensus_7100#1 AAAAGGGTGAAACGTGTAATTTTAACAAGAAAAGAAATATATAGTTGCATTATTGATAAT 493
*********** ************ ***********************************
consensus_7100#0 CAAAAAAAACCCACGCGTCCGCGG------------------------------ 1023
consensus_7100#1 CAATCGATCGGGAAAAGAGAAAAAAAAAAAAAAAAATCATCGTGCCGATTCTTG 547
*** * * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||