These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7108#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 977 fasta sequence [CCGGTTCCTCCGAGCAAGTCGGTGTTCTCTCGGGGCAATAGGATTAGAAAGAAAAGGTGTTAAAGCATTTCTCCAAACGCCATTTTTTTTTAAAAGGAATAAGAGCATAATCCGCCAATCAGTGTCAAGTGTGTATATGTGTATGTGTTAGTTTGTGTTTGCGTAATCGAAGTGAGTTTGAGCGGAAGTTCTGCACTCAACGTGAATCAGTAGTCAGTGTACCAGTGTGTGCGTCGCAAGCAAAGAAGCAAAGCGCGGCTAGCTTGCTTTTGAGGAAGAAAAA-CCGATCCCTCGCAGCTCCCACACAGCAGGACGCTCTCCCCGGGGTTGTTTGTGCACGAAAAAGGGGTACACCCGAGTCAGAGACACCCGCGTATATCGGGTCTTTTTTGTACTTCTTCAATTTGCAAGCATTTCTTCAGCATCTAGCATCTAACTCATAAGATATGGCCAATCTAATCACAGTGCGTCTGCAGCGTGGCGACGGTCAGGCCTGGGGCTTCCGTCTGCAGGGCGGCAAGGACTTCTCCGCCCCGCTGGTGCTACAGAGAGTTAACGGTGGCAGCGTGGCCGACCAGGCCGGTCTGATGGCTGGCGATGCG-CTGATCAAGGTCAACGGTACGGAGGTGTTCAACATGCGTCACAAGGATGCGCAGGACGTCATCGTGGCCGCTGGAAACTCGTTCGAGCTGACGGTGTCGAGAGGTGGTGCTACCTGGCGTCCGTCTGTTACGCCGACCGGTTCGCTACCGTCGCCGTCTCCATCGCTGCCCGGCAACGTCACACCGGTTACGCGCACCTCGCTGGCAGCGACGCCCCAGGAGATGAAACCGATCGGCAGTGGCCACAACACCGCCGCCAAACCGTTCGCTGCTGTAAACGGAAACGATGGACAGATCAAGAGCATCGTCAACAACCAATACAACACCCCGGTCGGCATGTACAGCGATGAGACCATCGCCGAAACGCTGTCCTCT] [+] EMBL BM582217 [CCGGTTCCTTCGAGCAAGTCGGTGTTCTCTCGGGGCAATAGGATTAGAAAGAAAAGGTGTTAAAGCATTTCTCCAAACGCCATTTTTTTTTAAAAGGAATAAGAGCATAATCCGCCAATCAGTGTCAAGTGTGTATATGTGTATGTGTTAGTTTGTGTTTGCGTAATCGAAGTGAGTTTGAGCGGAAGTTCTGCACTCAACGTGAATCAGTAGTCAGTGTACCAGTGTGTGCGTCGCAAGCAAAGAAGCAAAGCGCGGCTAGCTTGCTTTTGAGGAAGAAAAA CCGATCCCTCGCAGCTCCCACACAGCAGGACGCTCTCCCCGGGGTTGTTTGTGCACGAAAAAGGGGTACACCCGAGTCAGAGACAACCGCGTATATCGGGTCTTTTTTGTACTTCTTCAATTTGCAAGCATTTCTTCAGCATCTAGCATCTAACTCATAAGATATGGCCAATCTAATCACAGTGCGTCTGCAGCGTGGCGACGGTCAGGCCTGGGGCTTCCGTCTGCAGGGCGGCAAGGACTTCTCCGCCCCGCTGGTGCTACAGAGAGTTAACGGTGGCAGCGTGGCCGACCAGGCCGGTCTGATGGCTGGCGATGCG CTGATCAAGGTCACGGGTACGGAGGTGTTCAA ] [+] EMBL BM580542 [ CCGAGCAAGTCGGTGTTCTCTCGGGGCAATAGGATTAGAAAGAAAAGGTGTTAAAGCATTTCTCCAAACGCCATTTTTTTTTAAAAGGAATAAGAGCATAATCCGCCAATCAGTGTCAAGTGTGTATATGTGTATGTGTTAGTTTGTGTTTGCGTAATCGAAGTGAGTTTGAGCGGAAGTTCTGCACTCAACGTGAATCAGTAGTCAGTGTACCAGTGTGTGCGTCGCAAGCAAAGAAGCAAAGCGCGGCTAGCTTGCTTTTGAGGAAGAAAAA CCGATCCCTCGCAGCTCCCACACAGCAGGACGCTCTCCCCGGGGTTGTTTGTGCACGAAAAAGGGGTACACCCGAGTCAGAGACAACCGCGTATATCGGGTCTTTTTTGTACTTCTTCAATTTGCAAGCATTTCTTCAGCATCTAGCATCTAACTCATAAGATATGGCCAATCTAATCACAGTGCGTCTGCAGCGTGGCGACGGTCAGGCCTGGGGCTTCCGTCTGCAGGGCGGCAAGGACTTCTCCGCCCCGCTGGTGCTACAGAGAGTTAACGGTGGCAGCGTGGCCGACCAGGCC ] [+] EMBL BM584607 [ ccgGAGCAAGTCGGTGTTCTCTCGGGGCAATAGGATTAGAAAGAAAAGGTGTTAAAGCATTTCTCCAAACGCCA TTTTTTTAAAAGGAATAAGAGCATAATCCGCCAATCAGTGTCAAGTGTGTATATGTGTATGTGTTAGTTTGTGTTTGCGTAATCGAAGTGAGTTTGAGCGGAAGTTCTGCACTCAACGTGAATCAGTAGTCAGTGTACCAGTGTGTGCGTCGCAAGCAAAGAAGCAAAGCGCGGCTAGCTTGCTTTTGAGGAAGAAAAA CCGATCCCTCGCAGCTCCCACACAGCAGGACGCTCTCCCCGGGGTTGTTTGTGTACGAAAAAGGGGTACACCCGAGTCAGAGACACCCGCGTATATCGGGTCTTTTTTGTACTTCTTCAATTTGCAAGCATTTCTTCAGCATCTAGCATCTAACTCATAAGATATGGCCAATCTAATCACAGTGCGTCTGCAGCGTGGCGACGGTCAGGCCTGGGGCTTCCGTCTGCAGGGTGGCAAGGATTTCTCCGCCCCGCTGGTGCTACAGAGAGTTAACGGTGGCAGCGTGGCCGACCAGGCCGGTCTGATGGCTGGCGATGCGCCTGATCAAGGTCAACGGTACGGAGGTGTTCAACATGCGTCACAAGGATGCGCAGGACGTCATCGTGGACGCTGGAAACTCGTTCG ] [+] EMBL BM633742 [ ccGCTTGCTTTAGAGGAAGAAAAACCCGATCCCTCGCAGCTCCCACACAGCAGGACGCTCTCCCCGGGGTTGTTTGTGCACGAAAAAGGGGTA CCGAGTCAGCGACACCCGCGTATATCGGGTCTTTTTTGTACTTCTTCAATTTGCAAGCATTTCTTCAGCATCTAGCATCTAACTCATAAGCTATGGCCAATCTAATCACAGTGCGTCTGCAGCGTGGCGACGGTCAGGCCTGGGGCTTCCGTCTGCAGGGCGGCAAGGACTTTTCCGCCCCGCTGGTGCTACAGAGAGTTAACGGTGGCAGCGTGGCCGACCAGGCCGGTCTGATGGCTGGCGATGCG CTGATCAAGGTCAACGGTACGGAGGTGTTCAACATGCGTCACAAGGATGCGCAGGACGTCATCGTGGCCGCTGGAAACTCGTTCGAGCTGACGGTGTCGAGAGGTGGTGCTACCTGGCGTCCGTCTGTTACGCCGACCGGTTCGCTACCGTCGCCGTCTCCATCGCTGCCCGGCAACGTCACACCGGTTACGCGCACCTCGCTGGCAGCGACGCCCCAGGAGAT ] [+] EMBL BM635251 [ ccgGAGACACCCGCGTATATCGGGTCTTTTTTGTACTTCTTCAATTTGCAAGCATTTCTTCAGCATCTAGCATCTAACTCATAAGATATGGCCAATCTAATCACAGTGCGTCTGCAGCGTGGCGACGGTCAGGCCTGGGGCTTCCGTCTGCAGGGTGGCAAGGATTTCTCCGCCCCGCTGGTGCTACAGAGAGTTAACGGTGGCAGCGTGGCCGACCAGGCCGGTCTGATGGCTGGCGATGCG CTGATCAAGGTCAACGGTACGGAGGTGTTCAACATGCGTCACAAGGATGCGCAGGACGTCATCGTGGCCGCTGGAAACTCGTTCGAGCTGACGGTGTCGAGAGGTGGTGCTACCTGGCGTCCGTCTGTTACGCCGACCGGTTCGCTACCGTCGCCGTCTCCATCGCTGCCCGGCAACGTCACACCGGTTACGCGCACCTCGCTGGCAGCGACGCCCCAGGAGATGAAACCGATCGGCAGTGGCCACAACACCGCCGCCAAACCGTTCGCTGCTGTAAACGGAAACGATGGACAGATCAAGAGCATCGTCAACAACCAATACAACACCCCGGTCGGCATGTACAGCGATGAGACCATCGCCGAAACGCTGTCCTCT] consensusID : consensus_7108#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence [CCGCCCACGCGTCCGGGGGCAATAGGATTAGAAAGAAAAGGTGTTCAAGCATTTCTCCAAACGCCATTTTTTTAAAAAAGGAATAAGAGCATAATCCGCCAATCAGTGTCAAGTGTGCATATGTGTATGTGTTAGTTTGTGTTTGCGTAATCGAAGTGAGTTTGAGCGGAAAAAAAAGTTCTGCACTCAACGTGAATCAGTAGTCAGTGTACCAGTGTGTGCGTCGCAAGCTAAGAAGCAAAGCGCGGCTAGCTTGCTTTAGAGGAAGAAAAACCCGATCCCTCGCAGCTCCCACACAGCAGGACGCTCTCCCCGGGGTTGTTTGTGCACGAAAAAGGGGTACCGAGTCAGCGACACCCGCGTATATCGGGTCTTTTTTGTACTTCTTCAATTTGCAAGCATTTCTTCAGCATCTAGCATCTAACTCATAAGCTATGGCCAATCTAATCACAGTGCGTCTGCAGCGTGGCGACGGTCAGGCCTGGGGCTTCCGTCTGCAGGGCGGCAAGGACTTTTCCGCCCCGCT] [+] EMBL BM646241 [CCGCCCACGCGTCCGGGGGCAATAGGATTAGAAAGAAAAGGTGTTCAAGCATTTCTCCAAACGCCATTTTTTTAAAAAAGGAATAAGAGCATAATCCGCCAATCAGTGTCAAGTGTGCATATGTGTATGTGTTAGTTTGTGTTTGCGTAATCGAAGTGAGTTTGAGCGGAAAAAAAAGTTCTGCACTCAACGTGAATCAGTAGTCAGTGTACCAGTGTGTGCGTCGCAAGCTAAGAAGCAAAGCGCGGCTAGCTTGCTTTAGAGGAAGAAAAACCCGATCCCTCGCAGCTCCCACACAGCAGGACGCTCTCCCCGGGGTTGTTTGTGCACGAAAAAGGGGTACCGAGTCAGCGACACCCGCGTATATCGGGTCTTTTTTGTACTTCTTCAATTTGCAAGCATTTCTTCAGCATCTAGCATCTAACTCATAAGCTATGGCCAATCTAATCACAGTGCGTCTGCAGCGTGGCGACGGTCAGGCCTGGGGCTTCCGTCTGCAGGGCGGCAAGGACTTTTCCGCCCCGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7108#0 CCGGTTCCTCCGAGCAAGTCGGTGTTCTCTCGGGGCAATAGGATTAGAAAGAAAAGGTGT 60 consensus_7108#1 ---------------CCGCCCACGCG-TCCGGGGGCAATAGGATTAGAAAGAAAAGGTGT 44 * * * ** ***************************** consensus_7108#0 TAAAGCATTTCTCCAAACGCCATTTTTTTTTAAAAGGAATAAGAGCATAATCCGCCAATC 120 consensus_7108#1 TCAAGCATTTCTCCAAACGCCATTTTTTTAAAAAAGGAATAAGAGCATAATCCGCCAATC 104 * *************************** ***************************** consensus_7108#0 AGTGTCAAGTGTGTATATGTGTATGTGTTAGTTTGTGTTTGCGTAATCGAAGTGAGTTTG 180 consensus_7108#1 AGTGTCAAGTGTGCATATGTGTATGTGTTAGTTTGTGTTTGCGTAATCGAAGTGAGTTTG 164 ************* ********************************************** consensus_7108#0 AGCGGAA------GTTCTGCACTCAACGTGAATCAGTAGTCAGTGTACCAGTGTGTGCGT 234 consensus_7108#1 AGCGGAAAAAAAAGTTCTGCACTCAACGTGAATCAGTAGTCAGTGTACCAGTGTGTGCGT 224 ******* *********************************************** consensus_7108#0 CGCAAGCAAAGAAGCAAAGCGCGGCTAGCTTGCTTTTGAGGAAGAAAAACC-GATCCCTC 293 consensus_7108#1 CGCAAGCTAAGAAGCAAAGCGCGGCTAGCTTGCTTTAGAGGAAGAAAAACCCGATCCCTC 284 ******* **************************** ************** ******** consensus_7108#0 GCAGCTCCCACACAGCAGGACGCTCTCCCCGGGGTTGTTTGTGCACGAAAAAGGGGTACA 353 consensus_7108#1 GCAGCTCCCACACAGCAGGACGCTCTCCCCGGGGTTGTTTGTGCACGAAAAAGGGGTA-- 342 ********************************************************** consensus_7108#0 CCCGAGTCAGAGACACCCGCGTATATCGGGTCTTTTTTGTACTTCTTCAATTTGCAAGCA 413 consensus_7108#1 -CCGAGTCAGCGACACCCGCGTATATCGGGTCTTTTTTGTACTTCTTCAATTTGCAAGCA 401 ********* ************************************************* consensus_7108#0 TTTCTTCAGCATCTAGCATCTAACTCATAAGATATGGCCAATCTAATCACAGTGCGTCTG 473 consensus_7108#1 TTTCTTCAGCATCTAGCATCTAACTCATAAGCTATGGCCAATCTAATCACAGTGCGTCTG 461 ******************************* **************************** consensus_7108#0 CAGCGTGGCGACGGTCAGGCCTGGGGCTTCCGTCTGCAGGGCGGCAAGGACTTCTCCGCC 533 consensus_7108#1 CAGCGTGGCGACGGTCAGGCCTGGGGCTTCCGTCTGCAGGGCGGCAAGGACTTTTCCGCC 521 ***************************************************** ****** consensus_7108#0 CCGCTGGTGCTACAGAGAGTTAACGGTGGCAGCGTGGCCGACCAGGCCGGTCTGATGGCT 593 consensus_7108#1 CCGCT------------------------------------------------------- 526 ***** consensus_7108#0 GGCGATGCGCTGATCAAGGTCAACGGTACGGAGGTGTTCAACATGCGTCACAAGGATGCG 653 consensus_7108#1 ------------------------------------------------------------ consensus_7108#0 CAGGACGTCATCGTGGCCGCTGGAAACTCGTTCGAGCTGACGGTGTCGAGAGGTGGTGCT 713 consensus_7108#1 ------------------------------------------------------------ consensus_7108#0 ACCTGGCGTCCGTCTGTTACGCCGACCGGTTCGCTACCGTCGCCGTCTCCATCGCTGCCC 773 consensus_7108#1 ------------------------------------------------------------ consensus_7108#0 GGCAACGTCACACCGGTTACGCGCACCTCGCTGGCAGCGACGCCCCAGGAGATGAAACCG 833 consensus_7108#1 ------------------------------------------------------------ consensus_7108#0 ATCGGCAGTGGCCACAACACCGCCGCCAAACCGTTCGCTGCTGTAAACGGAAACGATGGA 893 consensus_7108#1 ------------------------------------------------------------ consensus_7108#0 CAGATCAAGAGCATCGTCAACAACCAATACAACACCCCGGTCGGCATGTACAGCGATGAG 953 consensus_7108#1 ------------------------------------------------------------ consensus_7108#0 ACCATCGCCGAAACGCTGTCCTCT 977 consensus_7108#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||