cluster # 7112

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Anopheles gambiae
cluster # 7112 cluster # 7112 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7112#0 length = 938 sequences # 5

consensus_7112#1 length = 427 sequences # 1

consensusID : consensus_7112#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 938
fasta sequence

                              [CCGCCGCCATCCCAGTGCCACCCAAGGTTTTGGGGGTGGAAGTGAGAGTTGTGCTTTTGCTTCTGGCTTTCGGTGGCTGAGGTTGAACCGTTCGCGGTCAGTTGTAGTATTGCCCCGTGCGAGGATAGAGAGCGCACAGGCGCGCGACAATCAACACGAACCGTGACACGCTGGTGAAGCGATACGCGAGTGAGCGTGAATAGAGCGTTGACTAATAGAATCAGCAGCATGGTACCGTCGGGACCAGCAGGTGTTTCAAAGATGCTGCCAAGTA-CCAGGACAGGCAGGGCGTTCGCTTTCGGACGGCATCATTTTCTACTCTCGCTGGGTTTATG-TTGCATTCTGCAACTGTGCCTGCTGGCAGGCTCTGCCAACGCTACCTCGATGTACTACAAGAAAGTTAGTGGTGAAAAGTATGAACCAGACTGGGTGCCCGTATCGTCCACGGTGATACCTTTGGTGGAGCGTG-TC-GTCAG-CGTGGGTG-CGCGCA-CGAAGCCGTCCACCGGTGCGGATGGTTCGCAACACCCCGGAGCGGCCCGTTTGCAGTCGGCGGACGAAAGCTACAAACGCGCGTACGTGAAGCACATCAGCAAGTTCACGAAGATTGGTACCGCCGGAGCGTTGGTTCAGCCGGGCACGCTCATTACCGGTAAACAGGCCGCAAGTGCAAAGGATTAGGAGCTGCCTCGGTGTGGACGGACGCAGGAGCCAACGGGGCGGAATGTGGAGCGGATACTGTGCGCGATTTCACCTCAAGTTCAATATAATCAGCGTGACTAACGTGTTTAAAATGTTGTGCTAAAGTTAATCACTAATTTGCTAAGTGTTGATATTAATAAACGTTAAACCTACCGCGTATGTGTCGCACGGAGCTCCCTCCTATGTGTACTAATAAAATTAAAACCAAAAAAATCTAAAATAAAAAAGGCAGCATGTGC]

[+] EMBL BX623556             [CCGCCGCCATCCCAGTGCCACCCAAGGTTTTGGGGGTGGAAGTGAGAGTTGTGCTTTTGCTTCTGGCTTTCGGTGGCTGAGGTTGAACCGTTCGCGGTCAGTTGTAGTATTGCCCCGTGCGAGGATAGAGAGCGCACAGGCGCGCGACAATCAACACGAACCGTGACACGCTGGTGAAGCGATACGCGAGTGAGCGTGAATAGAGCGTTGACTAATAGAATCAGCAGCATGGTACCGTCGGGACCAGCAGGTGTTTCCAAGATGCTGCCAAGTA CCAGGACAGGCAGGGCGTTCGCTTTCGGACGGCATCATTTTCTACTCTCGCTGGGTTTATG TTGCATTCTGCAACTGTGCCTGCTGGCAGGCTCTGCCAACGCTACCTCGATGTACTACAAGAAAGTTAGTGGTGAAAAGTATGAACCAGACTGGGTGCCCGTATCGTCCACGGTGATACCTTTGGTGGAGCGTG TC GTCAG CGTGGGTG CGCGCA CGAAGCCGTCCACCGGTGCGGATGGTTCGCAACACCCCGGAGCGGCCCGTTTGCAGTCGGCGGACGAAAGCTACAAACGCGCGTACGTGAAGCACATCAGCAAGTTCACGAAGATTGGTACCGCCGGAGCGTTGGTTCAGCCGGGCACGCTCATTACCGGTAAACAGGCCGCAAGTGCAAAGGATTAGGAGCTGCCTCGGTGTGGACGGACGCAGGAGCCAACGGGGCGGAATGTGGAGCGGATACTGTGCGCGATTTCACCTCAAGTTCAATATAATCAGCGTGACTAACGTGNTT AAATGGTGTGCTAAAG TAATCACTAATTTGCT AGTGTTGATATTAATAAACGTT AACCTACCGCGTATGTGTCGCAC                                                                      ]
[+] EMBL CNS0955R             [                                                                                                                                                          CACGAACCGTGACACGCTGGTGAAGCGATACGCGAGTAAGCGTGAATAGAGCGTTGACTAATAGAATCAGCAGCATGGTACCGTCGGGACCAGCAGGTGTTTCAAAGATGCTGCCAAGCA CCAGGACAGGCAGGGCGTTCGCTTTCGGACGGCACCATTTTCTACTCTCGCTGGGTTTATG TTGCATTCTGCAACTGTGCCTGCTGGCAGGCTCTGCCAACGCTACCTCGATGTACTACAAGAAAGTTAGTGGAGAAAAGTATGAACCAGACTGGGTGCCCGTATCGTCCACGGTGATACCTTTGGTGGAGCGTG TC GTCAG CGTGGGTG CGCGCA CGAAGCCGTCCGCCGGTGCGGATGGTTCGCAACGCCCCGGAGCGGCCCGTTTGCAGTCGGCGGACGAAAGCTACAAACGCGCGTACGTGAAGCACATCAGCAAGTTCACGAAGATTGGCACCGCCGGAGCGTTGGTTCAGCCGGGCACGCTCATTACCGGTAAACAGGCCGCAAGTGCAAAGGATTAGGAGCTGCCTCGGTGTGGACGGACGCAGGAGCCAACGGGGCGGAATGTGGAGCGGAAACTGTGCGCGATTTCACCTCAAGTTCAATATAATCAGCGTGACTAACGTGTTTAAAATGTTGTGCTAAAGTTAATCACTAA                                                                                                                           ]
[-] EMBL CNS0955S             [                                                                                                                                                                                                                                    ATGGTACCGTCGGGACCAGCAGGTGTTTCAAAGATGCTGCCAAGCA CCAGGACAGGCAGGGCGTTCGCTTTCGGACGGCACCATTTTCTACTCTCGCTGGGTTTATG TTGCATTCTGCAACTGTGCCTGCTGGCAGGCTCTGCCAACGCTACCTCGATGTACTACAAGAAAGTTAGTGGAGAAAAGTATGAACCAGACTGGGTGCCCGTATCGTCCACGGTGATACCTTTGGTGGAGCGTG TC GTCAG CGTGGGTG CGCGCA CGAAGCCGTCCGCCGGTGCGGATGGTTCGCAACGCCCCGGAGCGGCCCGTTTGCAGTCGGCGGACGAAAGCTACAAACGCGCGTACGTGAAGCACATCAGCAAGTTCACGAAGATTGGCACCGCCGGAGCGTTGGTTCAGCCGGGCACGCTCATTACCGGTAAACAGGCCGCAAGTGCAAAGGATTAGGAGCTGCCTCGGTGTGGACGGACGCAGGAGCCAACGGGGCGGAATGTGGAGCGGAAACTGTGCGCGATTTCACCTCAAGTTCAATATAATCAGCGTGACTAACGTGTTTAAAATGTTGTGCTAAAGTTAATCACTTATTCGCTAAGTGTTGATATTAATAAACGTTAAACCTACCGCGTTTGTGTCGCACGGAGCTCCCTCCTATGTGTACTAATAAAATTCCAACa                                 ]
[-] EMBL BX466654             [                                                                                                                                                                                                                                                                               GTACCCAGGACAGGCAGGGCGTTCGCTTTCGGACGGCATCATTTTCTACTCTCGCTGGGTTTATGCTTGCATTCTGCAACTGTGCCTGCTGGCAGGCTCTGCCAACGCTACCTCGATGTACTACAAGAAAGTTAGTGGTGAAAAGTATGAACCAGACTGGGTGCCCGTATCGTCCACGGTGATACCTTTGGTGGAGCGTG TC GTCAG CGTGGGTG CGCGCA CGAAGCCGTCCACCGGTGCGGATGGTTCGCAACACCCCGGAGCGGCCCGTTTGCAGTCGGCGGACGAAAGCTACAAACGCGCGTACGTGAAGCACATCAGCAAGTTCACGAAGATTGGTACCGCCGGAGCGTTGGTTCAGCCGGGCACGCTCATTACCGGTAAACAGGCCGCAAGTGCAAAGGATTAGGAGCTGCCTCGGTGTGGACGGACGCAGGAGCCAACGGGGCGGAATGTGGAGCGGATACTGTGCGCGATTTCACCTCAAGTTCAATATAATCAGCGTGACTAACGTGTTTAAAATGTTGTGCTAAAGTTAATCACTAATTTGCTAAGTGTTGATATTAATAAACGTTAAACCTACCGCGTATGTGTCGCACGGAGCTCCCTCCTATGTGTACTAATAAAATTAAAACCAAAAAAATCTAAAATAAAAAAGGCAGCATGTGC]
[-] EMBL BX466786             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGGAGCGTGTTCGGTCAGCCGTGGGTGTCGCGCACCGAAGCCGTCCACCGGTGCGGATGGTTCGCAACACCCCGGAGCGGCCCGTTTGCAGTCGGCGGACGAAAGCTACAAACGCGCGTACGTGAAGCACATCAGCAAGTTCACGAAGATTGGTACCGCCGGAGCGTTGGTTCAGCCGGGCACGCTCATTACCGGTAAACAGGCCGCAAGTGCAAAGGATTAGGAGCTGCCTCGGTGTGGACGGACGCAGGAGCCAACGGGGCGGAATGTGGAGCGGATACTGTGCGCGATTTCACCTCAAGTTCAATATAATCAGCGTGACTAACGTGTTTAAAATGTTGTGCTAAAGTTAATCACTAATTTGCTAAGTGTTGATATTAATAAACGTTAAACCTACCGCGTATGTGTCGCACGGAGCTCCCTCCTATGTGTACTAATAAAATTAAAA CAAAAAAATCTATA  CACAAAGGCAGC      ]




>consensus_7112#0
CCGCCGCCATCCCAGTGCCACCCAAGGTTTTGGGGGTGGAAGTGAGAGTTGTGCTTTTGC
TTCTGGCTTTCGGTGGCTGAGGTTGAACCGTTCGCGGTCAGTTGTAGTATTGCCCCGTGC
GAGGATAGAGAGCGCACAGGCGCGCGACAATCAACACGAACCGTGACACGCTGGTGAAGC
GATACGCGAGTGAGCGTGAATAGAGCGTTGACTAATAGAATCAGCAGCATGGTACCGTCG
GGACCAGCAGGTGTTTCAAAGATGCTGCCAAGTACCAGGACAGGCAGGGCGTTCGCTTTC
GGACGGCATCATTTTCTACTCTCGCTGGGTTTATGTTGCATTCTGCAACTGTGCCTGCTG
GCAGGCTCTGCCAACGCTACCTCGATGTACTACAAGAAAGTTAGTGGTGAAAAGTATGAA
CCAGACTGGGTGCCCGTATCGTCCACGGTGATACCTTTGGTGGAGCGTGTCGTCAGCGTG
GGTGCGCGCACGAAGCCGTCCACCGGTGCGGATGGTTCGCAACACCCCGGAGCGGCCCGT
TTGCAGTCGGCGGACGAAAGCTACAAACGCGCGTACGTGAAGCACATCAGCAAGTTCACG
AAGATTGGTACCGCCGGAGCGTTGGTTCAGCCGGGCACGCTCATTACCGGTAAACAGGCC
GCAAGTGCAAAGGATTAGGAGCTGCCTCGGTGTGGACGGACGCAGGAGCCAACGGGGCGG
AATGTGGAGCGGATACTGTGCGCGATTTCACCTCAAGTTCAATATAATCAGCGTGACTAA
CGTGTTTAAAATGTTGTGCTAAAGTTAATCACTAATTTGCTAAGTGTTGATATTAATAAA
CGTTAAACCTACCGCGTATGTGTCGCACGGAGCTCCCTCCTATGTGTACTAATAAAATTA
AAACCAAAAAAATCTAAAATAAAAAAGGCAGCATGTGC

consensusID : consensus_7112#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence

                              [AATNCGCCCGATGGTATAACGCACAGGCGCGCGACATCAACACGAACCGTGACACGCTGGTGAAAGCGATACGCGAGTGAGCGTGTAATAGAGCGTTGACTAATAGAATCAGCAGCATTNGTACCGTCGGGACCAGCAGTGTGTTTCCAAAGATGCTGCGCAAGTACCAGGACAGGCAGGGGCGTTCGCGTTTCGGACGGCATCATTTTCTAACTCTCGGCTGGGTTTATGTTTGCATTCTGCAACTTGTGCCTTGGCTGGCAGGGCTCTGGCGCAAACGCTACCTACGATTGTTACTACAAAGGAAAGTTCACGTTGGTTGAAAAGTATTGAACCCAGGAACTTGGGTGGCCCCCGTATTCCGTCCCAACGTGGTGGATTACCCCTATATTGGGTTGTGGATGCCGTGTTCTGGTCCAGACCGTTG]

[+] EMBL AL932352             [AATNCGCCCGATGGTATAACGCACAGGCGCGCGACATCAACACGAACCGTGACACGCTGGTGAAAGCGATACGCGAGTGAGCGTGTAATAGAGCGTTGACTAATAGAATCAGCAGCATTNGTACCGTCGGGACCAGCAGTGTGTTTCCAAAGATGCTGCGCAAGTACCAGGACAGGCAGGGGCGTTCGCGTTTCGGACGGCATCATTTTCTAACTCTCGGCTGGGTTTATGTTTGCATTCTGCAACTTGTGCCTTGGCTGGCAGGGCTCTGGCGCAAACGCTACCTACGATTGTTACTACAAAGGAAAGTTCACGTTGGTTGAAAAGTATTGAACCCAGGAACTTGGGTGGCCCCCGTATTCCGTCCCAACGTGGTGGATTACCCCTATATTGGGTTGTGGATGCCGTGTTCTGGTCCAGACCGTTG]




>consensus_7112#1
AATNCGCCCGATGGTATAACGCACAGGCGCGCGACATCAACACGAACCGTGACACGCTGG
TGAAAGCGATACGCGAGTGAGCGTGTAATAGAGCGTTGACTAATAGAATCAGCAGCATTN
GTACCGTCGGGACCAGCAGTGTGTTTCCAAAGATGCTGCGCAAGTACCAGGACAGGCAGG
GGCGTTCGCGTTTCGGACGGCATCATTTTCTAACTCTCGGCTGGGTTTATGTTTGCATTC
TGCAACTTGTGCCTTGGCTGGCAGGGCTCTGGCGCAAACGCTACCTACGATTGTTACTAC
AAAGGAAAGTTCACGTTGGTTGAAAAGTATTGAACCCAGGAACTTGGGTGGCCCCCGTAT
TCCGTCCCAACGTGGTGGATTACCCCTATATTGGGTTGTGGATGCCGTGTTCTGGTCCAG
ACCGTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7112#0      CCGCCGCCATCCCAGTGCCACCCAAGGTTTTGGGGGTGGAAGTGAGAGTTGTGCTTTTGC 60
consensus_7112#1      ------------------------------------------------------------
                                                                                  

consensus_7112#0      TTCTGGCTTTCGGTGGCTGAGGTTGAACCGTTCGCGGTCAGTTGTAGTATTGCCCCGTGC 120
consensus_7112#1      ---------------------------------------------------AATNCGCCC 9
                                                                             **  *

consensus_7112#0      GAGGATAGAGAGCGCACAGGCGCGCGACAATCAACACGAACCGTGACACGCTGGTGAA-G 179
consensus_7112#1      GATGGTATA--ACGCACAGGCGCGCGACA-TCAACACGAACCGTGACACGCTGGTGAAAG 66
                      ** * ** *   ***************** **************************** *

consensus_7112#0      CGATACGCGAGTGAGCGTG-AATAGAGCGTTGACTAATAGAATCAGCAGCAT-GGTACCG 237
consensus_7112#1      CGATACGCGAGTGAGCGTGTAATAGAGCGTTGACTAATAGAATCAGCAGCATTNGTACCG 126
                      ******************* ********************************  ******

consensus_7112#0      TCGGGACCAGCAG-GTGTTTC-AAAGATGCTGC-CAAGTACCAGGACAGGCAGGG-CGTT 293
consensus_7112#1      TCGGGACCAGCAGTGTGTTTCCAAAGATGCTGCGCAAGTACCAGGACAGGCAGGGGCGTT 186
                      ************* ******* *********** ********************* ****

consensus_7112#0      CGC-TTTCGGACGGCATCATTTTCTA-CTCTCG-CTGGGTTTATGTT-GCATTCTGCAAC 349
consensus_7112#1      CGCGTTTCGGACGGCATCATTTTCTAACTCTCGGCTGGGTTTATGTTTGCATTCTGCAAC 246
                      *** ********************** ****** ************* ************

consensus_7112#0      T-GTGCCT--GCTGGCAGG-CTCTGCC---AACGCTACCT-CGATG--TACTACAA--GA 397
consensus_7112#1      TTGTGCCTTGGCTGGCAGGGCTCTGGCGCAAACGCTACCTACGATTGTTACTACAAAGGA 306
                      * ******  ********* ***** *   ********** ****   ********  **

consensus_7112#0      AAGTTAGTGGTGAAAAGTATGAACCAGACT-GGGTGCCCGTATCGTCCACGGTGATACCT 456
consensus_7112#1      AAGTTCACGTTGGTTGAAAAGTATTGAACCCAGGAACTTGGGTGGCCCCCGTATTCCGTC 366
                      *****   * **      * * *    **   **  *  *  * * ** **         

consensus_7112#0      TTGGTGGAGCGTGTCGTCAGCGTGGGTGCGCGCACGAAGCCGTCCACCGGTGCGGATGGT 516
consensus_7112#1      CCAACGTGGTGGATTACCCCTATAT-TGGGTTGTGGATGCCGTGTTCTGGTCCAGACCGT 425
                           *  * *  *   *    *   ** *     ** *****   * *** * **  **

consensus_7112#0      TCGCAACACCCCGGAGCGGCCCGTTTGCAGTCGGCGGACGAAAGCTACAAACGCGCGTAC 576
consensus_7112#1      TG---------------------------------------------------------- 427
                      *                                                           

consensus_7112#0      GTGAAGCACATCAGCAAGTTCACGAAGATTGGTACCGCCGGAGCGTTGGTTCAGCCGGGC 636
consensus_7112#1      ------------------------------------------------------------
                                                                                  

consensus_7112#0      ACGCTCATTACCGGTAAACAGGCCGCAAGTGCAAAGGATTAGGAGCTGCCTCGGTGTGGA 696
consensus_7112#1      ------------------------------------------------------------
                                                                                  

consensus_7112#0      CGGACGCAGGAGCCAACGGGGCGGAATGTGGAGCGGATACTGTGCGCGATTTCACCTCAA 756
consensus_7112#1      ------------------------------------------------------------
                                                                                  

consensus_7112#0      GTTCAATATAATCAGCGTGACTAACGTGTTTAAAATGTTGTGCTAAAGTTAATCACTAAT 816
consensus_7112#1      ------------------------------------------------------------
                                                                                  

consensus_7112#0      TTGCTAAGTGTTGATATTAATAAACGTTAAACCTACCGCGTATGTGTCGCACGGAGCTCC 876
consensus_7112#1      ------------------------------------------------------------
                                                                                  

consensus_7112#0      CTCCTATGTGTACTAATAAAATTAAAACCAAAAAAATCTAAAATAAAAAAGGCAGCATGT 936
consensus_7112#1      ------------------------------------------------------------
                                                                                  

consensus_7112#0      GC 938
consensus_7112#1      --