|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7116#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 831 fasta sequence
[CCGCGGACGCGTGGGGTGCGTTTCCTTTGTGGCCGGGACGTTTCGAGGAGGGAGGTGTTTGCGAACCATCTTCGTGATCTTTTTCGATGGTAAACCATGGTGAAGTGGCTTGGAGCAGCGTTGAGTGAGTTCCTTTTTGAGCAAGTGACGATTGGCGTTGTTTGTGCAACGGGCAGGTTGGTTTGCGGTGTAACGGGTGATGATGCTGTTTGACTTGTCCTCTTTGTATAAAAAAGAAAAACTCGGAAAGGAACAATAGAAGGGAACGAAAATGACGAACACATAGTAAGTTTAGCTGTTTTTTGAATCCCAGTTTCAATTTATTTTGCAGGAGGAAAAATAGAGAATGTATTATCTCATGTGCGATGCTATTCTAC-GGGAAAGAGCTACTTCAAATTGTCCTCCACACTAGTTTACTTCAGAAAATTGTTCAAAAATCATCCAGTATCGAGCAATGTTAAAACAAAACTATTCAAAACCAACGCGGTTGAGAGCTGAAGAAGTATAAACGAGCGTTGTACCGAGTACAGAACAGCGAATAAATATCAAAACAGATTCTTATACTTCAAAGACAATATTTTGCGACTTTTTTTCGGATAACTCATAGGCTACAATAGTAATATCACAGCTGCAGTTCACACTAAACCAATTTGCACAACGCATCGGAACTCAATTTTCTCGGTCAAGCTAAGCCTATTTTCAGTCCAGATGCGCACACCCGGAGTGCAGTTAGCAATGCAGCGATGAAAGGAACGTAAAAAGAAACATAAACAGTTGATTCCAACAAGCAGTGTTTTTTTATTGTATCATAGTAACAATAGAATGTTTAAA]
[+] EMBL BM614796 [CCGCGGACGCGTGGGGTGCGTTTCCTTTGTGGCCGGGACGTTTCGAGGAGGGAGGTGTTTGCGAACCATCTTCGTGATCTTTTTCGATGGTAAACCATGGTGAAGTGGCTTGGAGCAGCGTTGAGTGAGTTCCTTTTTGAGCAAGTGACGATTGGCGTTGTTTGTGCAACGGGCAGGTTGGTTTGCGGTGTAACGGGTGATGATGCTGTTTGACTTGTCCTCTTTGTATAAAAAAGAAAAACTCGGAAAGGAACAATAGAAGGGAACGAAAATGACGAACACATAGTAAGTTTAGCTGTTTTTTGAATCCCAGTTTCAATTTATTTTGCAGGAGGAAAAATAGAGAATGTATTATCTCATGTGCGATGCTATTCTAC GGGAAAGAGCTACTTCAAATTGTCCTCCACACTAGTTTACTTCAGAAAATTGTTCAAAAATCATCCAGTATCGAGCAATGTTAAAACAAAACTATTCAAAACCAACGCGGTTGAGAGCTGAAGAAGTATAAACGAGCGTTGTACCGAGTACAGAACAGCG ]
[+] EMBL BM633936 [ ccgGTAAGTTTAGCTGTTTTTTGAATCCCAGTTTCAATTT GTTTGCAGGAGGAAAAATAGAGAATGTATTATCTCATGTACGATGCTATTCCACGGGGAAAGAGCTACTTCAAATTGTCCTCCACACTAGTTTACTTCAGAAAATTGTTCAAAAATCATCCAGTATCGAGCAATGTTAAAACAAAACTATTCAAAACCAACGCGGTTGAGAGCTGAAGAAGTATAAACGAGCGTTGTACCGAGTACAGAACAGCGAATAAATATCAAAACAGATTCTTATACTTCAAAGACAATATTTTGCGACTTTTTTTCGGATAACTCATAGGCTACAATAGTAATATCACAGCTGCAGTTCACACTAAACCAATTTGCACAACGCATCGGAACTCAATTTTCTCGGTCAAGCTAAGCCTATTTTCAGTCCAGATGCGCACACCCGGAGTGCAGTTAGCAATGCAGCGATGAAAGGAACGTAAAAAGAAACATAAACAGTTGATTCCAACAAGCAGTGTTTTTTTATTGTATCATAGTAACAATAGAATGTTTAAA]
consensusID : consensus_7116#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 662 fasta sequence
[TGCTCGAGGCAAGAATCGGCACGAGGGGNTGTGACTGCGTGTGATAGTGCGTCGTGCTGTGCATTTTCCATCAAAAAAGTTACTAAAAACGCACCATTTTGCTACAAATTTTCCCTATTTTGGAAACTCACGTCACGCACTACATCAGGTGAACGCATACTCGCACCAACACCAC-ACCCTCCCC-AA-AACCCACTTTTCGCGGCTAGCTGT-TGTATAATATAAAATCCGTCACGCTGGATAAGATGGCGCGTTACCGTGAGTGGGACCTGCAGTGCAA-GGTTTACGTGGGCAATTTGGGCTCGTCGGC-GTC-GAAGCACGAGATCGAAAGTGCGTTCGGC-AA-GTATGGCCCGCTGCGGAACGTCTGGGTGGCTCGCAATCCTCCCGGTTTCGCCTTCGTAGAGTTCGAGGATAAGCGTGATGCGGAGGACGCAGTTCGCTCGCTGGATGGAACACGATGCTGCGGAACGCGTATCCGGGTGGAGATGTCTTCTGGCCGCTCGCGACGTGACGAACGCACCCGCCGACCCCGCCGCTCGTACAGATCCCGCAGCCGCAGCATGAGCCGTGAGCGCGATCGCGACCGTCGCAGCCGCAGTGGATCTCGCGACCGGCGCTAAACACGGGAAGGAGAGGGACGCTTTTTTTTGGGGGACGTGAGACAC]
[+] EMBL BX466290 [TGCTCGAGGCAAGAATCGGCACGAGGGGNTGTTACTGCGTGTGATAGTGCGTCGTGCTGTGCATTTTCCATCAAAAAAGTTACTAAAAACGCACCATTTTGCTACAAATTTTCCCTATTTTGGAAACTCACGTCACGCACTACATCAGGTGAACGCATACTCGCACCAACACCACGACCCTCCCCGAAGAACCCACTTTTCGCGGCTAGCTGTATGTATAATATAAAATCCGTCACGCTGGATAAGATGGCGCGTTACCGTGAGTGGGACCTGCAGTGCAAGGGTTTACGTGGGCAATTTGGGCTCGTCGGCGGTCGGAAGCACGAGATCGAAAGTGCGTTCGGCGAAGGTATGGCCCGCTGg ]
[+] EMBL BM601954 [ ccggCTGCGTGTGATAGTGCGTCGTGCTGTGCATTTTCCATCAAAAAAGTTACTAAAAACGCACCATTTTGCTACAAATTTTCCCTATTTTGGAAACTCACGTCACGCACTACATCAGGTGAACGCATACTCGCACCAACACCAC ACCCTCCCC AA AACCCACTTTTCGCGGCTAGCTGT TGTATAATATAAAATCCGTCACGCTGGATAAGATGGCGCGTTACCGTGAGTGGGACCTGCAGTGCAA GGTTTACGTGGGCAATTTGGGCTCGTCGGC GTC GAAGCACGAGATCGAAAGTGCGTTCGGC AA GTATGGCCCGCTGCGGAACGTCTGGGTGGCTCGCAATCCTCCCGGTTTCGC ]
[+] EMBL BM597959 [ ccgTGCGTGTGATAGTGCGTCGTGCTGTGCATTTTCCATCAAAAAAGTTACTAAAAACGCACCATTTTGCTACAAATTTTCCCTATTTTGGAAACTCACGTCACGCACTACATCAGGTGAACGCATACTCGCACCAACACCAC ACCCTCCCC AA AACCCACTTTTCGCGGCTAGCTGT TGTATAATATAAAATCCGTCACGCTGGATAAGATGGCGCGTTACCGTGAGTGGGACCTGCAGTGCAA GGTTTACGTGGGCAATTTGGGCTCGTCGGC GTC GAAGCACGAGATCGAAAGTGCGTTCGGC AA GTATGGCCCGCTGCGGAACGTCTGGGTGGCTCGCAATCCTCCCGGTTTCGCCTTCGTAGAGTTCGAGGATAAGCGTGATGCGGAGGACGCAGTTCGCTCGCTGGATGGAACACGATGCTGCGGAACGCGTATCCGGGTGGAGATGTCTTCTGGCCGCTCGCGACGTGACGAACGCACCCGCCGACCCCGCCGCTCGTACAGATCCCGCAGCCGCAGCATGAGCCGTGAGCGCGATCGCGACCGTCGCAGCCGCAGTGGATCTCGCGACCGGCGCTAAACACGGGAAGGAGAGGGACGCTTTTTTTTGGGGGACGTGAGACAC]
consensusID : consensus_7116#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence
[CCGCCCACGCGTCCGCTTTCAAACCATACAATACCCGAAACTAGCTGAGAACTTTGTAGTTCAAGCAATTGAAAAAAACGCAAGAAAACAGCGCTCCGTAGAACGACCCCGGAGAATAGACACGCAATTTTGTTCGACCAATCTCGAAGCGAGAGCGCGTGAACGCCCTGAAGAAGATGAAGTCGATAGAGCGCCACCGTTACGAGAACTCGCACTACGCCGACGATGACGACAACATCGTGTTCGAAGACTTTGCCCGCCTGCGGATGAACGAGCCGGAGTAAGCCTGTCCCGCCTGATGCGGCATTCACCTTCAACCATCCTTCACCCCAAGGGCGAACGGCTTTAATCCGGAGAGAAGACAGCAAATGTCATGTCTTCTGTTCCATTTCCTCCACCGAGCACCCGAGCAGGCAGCAAACGCAAACATGAAGAAAACACACACGCCCCAAAAATCCTCCCAATGCTATTCCGCGCCAAGTATGCTTTCTTTCATGCCCTTTTAATGCTCCCAGGAGCGGTACGAGCGTGCGTGTGATGGCTGAGAGGGGACGAACGAGTGTCCCTCGGGGGGACCCTTC]
[+] EMBL BM634793 [CCGCCCACGCGTCCGCTTTCAAACCATACAATACCCGAAACTAGCTGAGAACTTTGTAGTTCAAGCAATTGAAAAAAACGCAAGAAAACAGCGCTCCGTAGAACGACCCCGGAGAATAGACACGCAATTTTGTTCGACCAATCTCGAAGCGAGAGCGCGTGAACGCCCTGAAGAAGATGAAGTCGATAGAGCGCCACCGTTACGAGAACTCGCACTACGCCGACGATGACGACAACATCGTGTTCGAAGACTTTGCCCGCCTGCGGATGAACGAGCCGGAGTAAGCCTGTCCCGCCTGATGCGGCATTCACCTTCAACCATCCTTCACCCCAAGGGCGAACGGCTTTAATCCGGAGAGAAGACAGCAAATGTCATGTCTTCTGTTCCATTTCCTCCACCGAGCACCCGAGCAGGCAGCAAACGCAAACATGAAGAAAACACACACGCCCCAAAAATCCTCCCAATGCTATTCCGCGCCAAGTATGCTTTCTTTCATGCCCTTTTAATGCTCCCAGGAGCGGTACGAGCGTGCGTGTGATGGCTGAGAGGGGACGAACGAGTGTCCCTCGGGGGGACCCTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7116#1 ------------------------------------------------------------
consensus_7116#0 CCGCGGACGCGTGGGGTGCGTTTCCTTTGTGGCCGGGACGTTTCGAGGAGGGAGGTGTTT 60
consensus_7116#2 ------------------------------------------------------------
consensus_7116#1 --------------------TGCTCGA-GGCAAGAATCGGCACGAGGGGNTGTGACTGCG 39
consensus_7116#0 GCGAACCATCTTCGTGATCTTTTTCGATGGTAAACCATGGTGAAGTGGCTTGGAGCAGCG 120
consensus_7116#2 ------------------------------------------------------------
consensus_7116#1 TGTGATAGTGCGTCGTGCTGTGCATTTTCC-ATCAAAAAAGTTACTAAAAACGCACCATT 98
consensus_7116#0 T-TGAGTGAGTTCCTTTTTGAGCAAGTGACGATTGGCGTTGTTTGTGCAA-CGGGCAGGT 178
consensus_7116#2 ------------------------------------------------CCGCCCACGCGT 12
* * *
consensus_7116#1 TTGCTACAAATTTTCCCTATTTTGGAA--ACTCACGTCACGCACTACATCAGGTGAACGC 156
consensus_7116#0 TGGTTTGCGGTGTAACGGGTGATGATGCTGTTTGACTTGTCCTCTTTGTATAAAAAAGAA 238
consensus_7116#2 CCGCTTTCAAACCATACAATACCCGAA--ACT--AGCTGAGAACTTTGTAGTTCAAGCAA 68
* * * * ** * *
consensus_7116#1 ATACTCGCACC--AACACCACACCCTCCCCAAAACC-----CACTTTTCGCGGCTAGCTG 209
consensus_7116#0 AAACTCGGAAAGGAACAATAGAAGGGAACGAAAATGACGAACACATAGTAAGTTTAGCTG 298
consensus_7116#2 TTGAAAAAAACGCAAGAAAACAGCGCTCCGTAGAACGACCCCGGAGAATA-GACACGCAA 127
* ** * * * * * * * * **
consensus_7116#1 TTGTAT-AATATAAAATCCGTCACGCTGGATAAGATGGCGCGTTACCGTGAGTGGGACCT 268
consensus_7116#0 TTTTTTGAATCCCAGTTTCAATTTATTTTGCAGGA-GGAAAAATAGAGAATGTATTATCT 357
consensus_7116#2 TTTTGTTCGACCAATCTCGAAGCGAGAGCGCGTGA--ACGCCCTGAAGAAGATGAAGTCG 185
** * * * * ** * * * *
consensus_7116#1 GCAGTGCAAGGTT----TACGTGG----GCAATTTGGGCTCGTCGGCGTCGAAGCACGAG 320
consensus_7116#0 CATGTGCGATGCTATTCTACGGGAAAGAGCTACTTCAAATTGTCCTCCACACTAGTTTAC 417
consensus_7116#2 ATAGAGCGCCACC---------------GTTACGAGAACTCGCACTACGCCGACGATGAC 230
* ** * * * * * *
consensus_7116#1 ATCGAAAGTGCGTTCGGCAAGTATGGCCCGCTGCGGAACGTCTGGGTGG-----CTCGCA 375
consensus_7116#0 TTCAGAAAATTGTTCAAAAATCATCCAGTATCGAGCAATGTTAAAACAAAACTATTCAAA 477
consensus_7116#2 GACAACATCGTGTTCGAAGACTTTGCCCGCCTGCGGATGAACGAGCCGGAG-TAAGCCTG 289
* * **** * * * * * *
consensus_7116#1 ATCCTCCCGGTTTCGCCTTCGTAGAGTTCGAGGATAAGCGTGATGCGGAGGAC------G 429
consensus_7116#0 ACCAACGCGGTTGAGAGCTGAAGAAGTATAA--ACGAGCGTTGTACCGAGTACAGAACAG 535
consensus_7116#2 TCCCGCCTGATGCGGCATTCACC---TTCAA--CCATCCTTCACCCCAAGGGCG----AA 340
* * * * * * * * * * * ** *
consensus_7116#1 CAG-TTCGCTCGCTGGATGGAACACGATGCTGCGGAACGCGTATCCGGGTGGAGATGTCT 488
consensus_7116#0 CGA-ATAAATATCAAAACAGATTCTTATACTTCAAAGACAATATTTTGC--GACTTTTTT 592
consensus_7116#2 CGGCTTTAATCCGGAGAGAAGACAGCAAATGTCATGTCTTCTGTTCCAT----TTCCTCC 396
* * * * * * * * *
consensus_7116#1 TCTGGCCGCTCGCG-ACGTGACGAACGCACCCGCCGA----CCCCGCCGCTCGTACAGAT 543
consensus_7116#0 TCGGATAACTCATA-G-GCTACAATAGTAAT-ATCAC----AGCTGCAGTTCACACTAAA 645
consensus_7116#2 ACCGAGCACCCGAGCAGGCAGCAAACGCAAACATGAAGAAAACACACACGCCCCAAAAAT 456
* * * * * * * * * * * * *
consensus_7116#1 CCCGCAGCCGC-AGCATGAGCCGTGAGCGCGATCGCGACCGTCGCAGCCGCAGTGGATCT 602
consensus_7116#0 CC--AATTTGC-ACAACGCATCG-GAACTCAATTTTCTCGGTCA-AGCTAAGCCTATTTT 700
consensus_7116#2 CCTCCCAATGCTATTCCGCGCCAAGTATGCTTTCTTTCATGCC----CTTTTAATGCTCC 512
** ** * * * * * * * * * *
consensus_7116#1 CGCGACCGGCGC-TAAACACGGGAAGGAG--AGGGACGCTTTTTTTTGGGGGACGTGAGA 659
consensus_7116#0 CAGTCCAGATGCGCACACCCGGAGTGCAGTTAGCAATGCAGCGATGAAAGGAACGTAAAA 760
consensus_7116#2 CAGGAGCGGTACGAGCGTGCGTGTGATGGCTGAGAGGGGACGAACGAGTGTCCCTCGGGG 572
* * * ** * * * *
consensus_7116#1 CAC--------------------------------------------------------- 662
consensus_7116#0 AGAAACATAAACAGTTGATTCCAACAAGCAGTGTTTTTTTATTGTATCATAGTAACAATA 820
consensus_7116#2 GGACCCTTC--------------------------------------------------- 581
consensus_7116#1 -----------
consensus_7116#0 GAATGTTTAAA 831
consensus_7116#2 -----------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||