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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7121#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1000 fasta sequence
[CCGCCCACGCGTCCGGCCGGTCATTTGTGGCTTTGCCATTTCGTTCGGCACGGTGCAGTCGGACGGACGGCGCAAGGAGTACGTGAAGCCGATCATGTTCAGCGGTGGCGTTGGTACGATGGACTCGGATCTGGTGGATAAGAAGGATCCGAAGCGGGGCATGCTGTTGGCCAAGATCGGCGGTCCAGTGTATCGTATCGGTGTCGGTGGCGGTGCGGCCAGTTCGGTGGAGGTGCAGGGCGACAGCACGAACAGCGAGCTCGACTTCAACGCCGTCCAGCGCGGTGACGCGGA-G-ATGGAGAACAAGCTGAACCGCGTAGTGCGCGCCTGCATCGAGATGGGCGACCGCAACCCGATCCTGGCCATCCACGACCAGGGCGCCGGGGGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTCTCCAAAGCGTTCCAGCTCGGCGATCCGACCATTTCCACGCTGGAACTGTGGGGCGCCGAGTATCAGGAAAACAATGCCGTCCTGCTGGACGCAAGCGATCGCGACCTGTTGCAGCGGATCTGCGATCGCGAGCGGTGTCCGGTTTCGTTCGTCGGACAGGT-GACCGG-TTCCGGGTACGTAACGCTGCTAGAGCAAGAGTTTGACGCCGGCG-CAGACAGGTTTGCCGACCGCGCCAAGTGC-GGCAAGGAGCTGGCGCACGTTCCGTTCGACATGCACCTGGACCACGTGCTGGGCAAGATGCCGCAGAAGGAGTTTAAGCTGCAGCACATCGGCGAGCGGCTGGACGAGTTCCAGCTAACGGCCAAGGTGAAGCTGCCGGAAGCGCTGAACCTGGTGCTGTCGGCCGCCACCGTCGGCAGCAAGCGCTACCTAACGAACAAGGTGGACCGGTCGGTGACGGGTCTGGTGGCGCAGCAGCAGTGCGTGGGCCCGCTGCACACACCGCTGGCCGACTTCGGGCTTGGTGGCGGTGTCGCACTTTGCCCGCCAAGGCGT]
[+] EMBL BM596566 [CCGCCCACGCGTCCGGCCGGTCATTTGTGGCTTTGCCATTTCGTTCGGCACGGTGCAGTCGGACGGACGGCGCAAGGAGTACGTGAAGCCGATCATGTTCAGCGGTGGCGTTGGTACGATGGACTCGGATCTGGTGGATAAGAAGGATCCGAAGCGGGGCATGCTGTTGGCCAAGATCGGCGGTCCAGTGTATCGTATCGGTGTCGGTGGCGGTGCGGCCAGTTCGGTGGAGGTGCAGGGCGACAGCACGAACAGCGAGCTCGACTTCAACGCCGTCCAGCGCGGTGACGCGGA G ATGGAGAACAAGCTGAACCGCGTAGTGCGCGCCTGCATCGAGATGGGCGACCGCAACCCGATCCTGGCCATCCACGACCAGGGCGCCGGGGGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTCTCCAAAGCGTTCCAGCTCGGCGATCCGACCATTTCCACGCTGGAACTGTGGGGCGCCGAGTATCATGAAAACAATGCCGTCCTGCTGGACGCAAGCGATCGCGACCTGTTGCAGCGGATCTGCGATCGCGAGCGGTGTCCGGTTTCGTTCGTCGGACAGGT GACCGG TTCCGGGTACGTAACGCTGCTAGAGCAAGAGTTTGACGCCGGCGCCAGACAGGTTTGCCGACCGCGCC ]
[+] EMBL BM654239 [ ccgGGCTTTGCCATTTCGTTCGGCACGGTGCAGTCGGACGGACGGCGCAAGGAGTACGTGAAGCCGATCATGTTCAGCGGTGGCGTTGGTACGATGGACTCGGATCTGGTGGATAAGAAGGATCCGAAGCGGGGCATGCTGTTGGCCAAGATCGGCGGTCCAGTGTATCGTATCGGTGTCGGTGGCGGTGCGGCCAGTTCGGTGGAGGTGCAGGGCGACAGCACGAACAGCGAGCTCGACTTCAACGCCGTCCAGCGCGGTGACGCGGA G ATGGAGAACAAGCTGAACCGCGTAGTGCGCGCCTGCATCGAGATGGGCGACCGCAACCCGATCCTGGCCATCCACGACCAGGGCGCCGGGGGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTCTCCAAAGCGTTCCAGCTCGGCGATCCGACCATTTCCACGCTGGAACTGTGGGGCGCCGAGTATCAGGAAAACAATGCCGTCCTGCTGGACGCAAGCGATCGCGACCTGTTGCAGCGGATCTGCGATCGCGAGCGGTGTCCGGTTTCGTTCGTCGGACAGGTGGACCGGTTTCCGGGTACGTAACGCTGCTAGAGCAAGAGTTTGACGCCGGCG CAGACAGGTTTGCCGACCGCGCCAAGTGCGGGCAAGGAGCTGGC ]
[+] EMBL BM591979 [ acCCA CGC GT CCGCGGACGCGTGG GAACAAGCTGAACCGCGTAGTGCGCGCCTGCATCGAGATGGGCGACCGCAACCCGATCCTGGCCATCCACGACCAGGGCGCCGGGGGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTCTCCAAAGCGTTCCAGCTCGGCGATCCGACCATTTCCACGCTGGAACTGTGGGGCGCCGAGTATCAGGAAAACAATGCCGTCCTGCTGGACGCAAGCGATCGCGACCTGTTGCAGCGGATCTGCGATCGCGAGCGGTGTCCGGTTTCGTTCGTCGGACAGGT GACCGG TTCCGGGTACGTAACGCTGCTAGAGCAAGAGTTTGACGCCGGCG CAGACAGGTTTGCCGACCGCGCCAAGTGC GGCAAGGAGCTGGCGCACGTTCCGTTCGACATGCACCTGGACCACGTGCTGGGCAAGATGCCGCAGAAGGAGTTTAAGCTGCAGCACATCGGCGAGCGGCTGGACGAGTTCCAGCTAACGGCCAAGGTGAAGCTGCCGGAAGCGCTGAACCTGGTGCTGTCGGCCGCCACCGTCGGCAGCAAGCGCTACCTAACGAACAAGGTGGACCGGTCGGTGACGGGTCTGGTGGCGCAGCAGCAGTGCGTGGGCCCGCTGCACACACCGCTGGCCGACTTCGGGCTTGGTGGCGGTGTCGCACTTTGCCCGCCAAGGCGT]
[+] EMBL BM614892 [ TTGCCGACCGCGCCAAGTGC GGCAAGGAGCTGGCGCACGTTCCGTTCGACATGCACCTGGACCACGTGCTGGGCAAGATGCCGCACAAGGAGTTTAAGCTGCAGCACATCGGCGAGCGGCTGGACGAGTTCCAGCTAACGGCCAAGGTGAAGCTGCCGGAAGCGCTGAACCTGGTGCTGTCGGCCGCCACCGTCGGCAGCAAGCGCTACCTAACGAACAAGGTGG ]
consensusID : consensus_7121#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 754 fasta sequence
[CCGGGGGCGACCACTGGCACCGGGGGTCGGTTGCGTGATGTGCAGAGCATTGGGCGCGGCGGTTTACCGATCGCCGGTACGGCCGGATACTGTGTGGGTATGTTGAACATTCCGGGCCACAAGCTGCCGTACGAGAGCGAGCAGGAGTATCCGGGTTCGTTCGCCCGTCCGCTGAAGGTGCTGATCGAGGCGAGCGACGGTGCGTCGGACTATGGCAACAAGTTTGGCGAGCCAGTCATTTGTGGTTTTGCCATTTCGTTCGGCACGGTGCAGTCGGACGGACGGCGCAAGGAGTACGTGAAGCCGATCATGTTCAGCGGTGGCGTTGGTACGATGGACTCCGATCTGGTGGATAAAAAGGATCCGAAGCGGGGCATGCTGTTGGCCAAGATCGGCGGTCCAGTGTATCGTATCGGTGTCGGTGGCGGTGCGGCCAGTTCGGTGGAGGTGCAGGGCGACAGTACGAACAGCGAGCTCGACTTCAACGCCGTCCAGCGCGGTGACGCGGAGATGGAGAACAAGCTGAACCGCGTAGTGCGCGCCTGCATCGAGATGGGCGATCGCAACCCGATCCTGGCCATCCACGACCA-GGGCGCCGGTGGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTCTCCAAAGCGTTCCAGCTCGGCGATCCGACCATTTCCACGCTGGAACTGTGGGGCGCCGAGTATCAGGAAAACAATGCCGTCCTGCTGGACGCAA]
[+] EMBL BM595653 [CCGGGGGCGACCACTGGCACCGGGGGTCGGTTGCGTGATGTGCAGAGCATTGGGCGCGGCGGTTTACCGATCGCCGGTACGGCCGGATACTGTGTGGGTATGTTGAACATTCCGGGCCACAAGCTGCCGTACGAGAGCGAGCAGGAGTATCCGGGTTCGTTCGCCCGTCCGCTGAAGGTGCTGATCGAGGCGAGCGACGGTGCGTCGGACTATGGCAACAAGTTTGGCGAGCCAGTCATTTGTGGTTTTGCCATTTCGTTCGGCACGGTGCAGTCGGACGGACGGCGCAAGGAGTACGTGAAGCCGATCATGTTCAGCGGTGGCGTTGGTACGATGGACTCCGATCTGGTGGATAAAAAGGATCCGAAGCGGGGCATGCTGTTGGCCAAGATCGGCGGTCCAGTGTATCGTATCGGTGTCGGTGGCGGTGCGGCCAGTTCGGTGGAGGTGCAGGGCGACAGTACGAACAGCGAGCTCGACTTCAACGCCGTCCAGCGCGGTGACGCGGAGATGGAGAACAAGCTGAACCGCGTAGTGCGCGCCTGCATCGAGATGGGCGATCGCAACCCGATCCTGGCCATCCACGACCA GGGCGCCGGTGGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTCTCCAAAGC ]
[+] EMBL BM599356 [ ccgGCTGAAAGTGCTGATTGAGGCGAGCGACGGTGCGTCGGATTATGGCAACAAGTTTGGCGAGCCGGTCATTTGTGGCTTTGCCATTTCGTTCGGCACGGTGCAGTCGGACGGACGGCGCAAGGAGTACGTAAAGCCGATCATGTTCAGCGGTGGCGTTGGTACGATGGACTCCGATCTGGTGGATAAGAAGGATCCGAAGCGGGGCATGCTGTTGGCCAAGATCGGCGGTCCAGTGTATCGTATCGGTGTCGGTGGCGGTGCGGCCAGTTCGGTGGAGGTGCAGGGCGACAGCACGAACAGCGAGCTCGACTTCAACGCCGTCCAGCGCGGTGACGCGGAGATGGAGAACAAGCTGAACCGCGTAGTGCGCGCCTGCATCGAGATGGGCGACCGCAACCCGATCCTGGCCATCCACGACCAGGGGCGCCGGGGGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTCTCCAAAGCGTTCCAGCTCGGCGATCCGACCATTTCCACGCTGGAACTGTGGGGCGCCGAGTATCAGGAAAACAATGCCGTCCTGCTGGACGCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7121#0 ------------------------------------------------------------
consensus_7121#1 CCGGGGGCGACCACTGGCACCGGGGGTCGGTTGCGTGATGTGCAGAGCATTGGGCGCGGC 60
consensus_7121#0 ------------------------------------------------------------
consensus_7121#1 GGTTTACCGATCGCCGGTACGGCCGGATACTGTGTGGGTATGTTGAACATTCCGGGCCAC 120
consensus_7121#0 ------------------------------------------------------------
consensus_7121#1 AAGCTGCCGTACGAGAGCGAGCAGGAGTATCCGGGTTCGTTCGCCCGTCCGCTGAAGGTG 180
consensus_7121#0 -----------------------------------CCGCCCACGCGTCCGGCCGGTCATT 25
consensus_7121#1 CTGATCGAGGCGAGCGACGGTGCGTCGGACTATGGCAACAAGTTTGGCGAGCCAGTCATT 240
* * * * *** ******
consensus_7121#0 TGTGGCTTTGCCATTTCGTTCGGCACGGTGCAGTCGGACGGACGGCGCAAGGAGTACGTG 85
consensus_7121#1 TGTGGTTTTGCCATTTCGTTCGGCACGGTGCAGTCGGACGGACGGCGCAAGGAGTACGTG 300
***** ******************************************************
consensus_7121#0 AAGCCGATCATGTTCAGCGGTGGCGTTGGTACGATGGACTCGGATCTGGTGGATAAGAAG 145
consensus_7121#1 AAGCCGATCATGTTCAGCGGTGGCGTTGGTACGATGGACTCCGATCTGGTGGATAAAAAG 360
***************************************** ************** ***
consensus_7121#0 GATCCGAAGCGGGGCATGCTGTTGGCCAAGATCGGCGGTCCAGTGTATCGTATCGGTGTC 205
consensus_7121#1 GATCCGAAGCGGGGCATGCTGTTGGCCAAGATCGGCGGTCCAGTGTATCGTATCGGTGTC 420
************************************************************
consensus_7121#0 GGTGGCGGTGCGGCCAGTTCGGTGGAGGTGCAGGGCGACAGCACGAACAGCGAGCTCGAC 265
consensus_7121#1 GGTGGCGGTGCGGCCAGTTCGGTGGAGGTGCAGGGCGACAGTACGAACAGCGAGCTCGAC 480
***************************************** ******************
consensus_7121#0 TTCAACGCCGTCCAGCGCGGTGACGCGGAGATGGAGAACAAGCTGAACCGCGTAGTGCGC 325
consensus_7121#1 TTCAACGCCGTCCAGCGCGGTGACGCGGAGATGGAGAACAAGCTGAACCGCGTAGTGCGC 540
************************************************************
consensus_7121#0 GCCTGCATCGAGATGGGCGACCGCAACCCGATCCTGGCCATCCACGACCAGGGCGCCGGG 385
consensus_7121#1 GCCTGCATCGAGATGGGCGATCGCAACCCGATCCTGGCCATCCACGACCAGGGCGCCGGT 600
******************** **************************************
consensus_7121#0 GGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTC 445
consensus_7121#1 GGTAACTGTAACGTGCTGAAGGAGCTGGTCGAACCGGGCTGTGCCGGTGCGGTCATTTTC 660
************************************************************
consensus_7121#0 TCCAAAGCGTTCCAGCTCGGCGATCCGACCATTTCCACGCTGGAACTGTGGGGCGCCGAG 505
consensus_7121#1 TCCAAAGCGTTCCAGCTCGGCGATCCGACCATTTCCACGCTGGAACTGTGGGGCGCCGAG 720
************************************************************
consensus_7121#0 TATCAGGAAAACAATGCCGTCCTGCTGGACGCAAGCGATCGCGACCTGTTGCAGCGGATC 565
consensus_7121#1 TATCAGGAAAACAATGCCGTCCTGCTGGACGCAA-------------------------- 754
**********************************
consensus_7121#0 TGCGATCGCGAGCGGTGTCCGGTTTCGTTCGTCGGACAGGTGACCGGTTCCGGGTACGTA 625
consensus_7121#1 ------------------------------------------------------------
consensus_7121#0 ACGCTGCTAGAGCAAGAGTTTGACGCCGGCGCAGACAGGTTTGCCGACCGCGCCAAGTGC 685
consensus_7121#1 ------------------------------------------------------------
consensus_7121#0 GGCAAGGAGCTGGCGCACGTTCCGTTCGACATGCACCTGGACCACGTGCTGGGCAAGATG 745
consensus_7121#1 ------------------------------------------------------------
consensus_7121#0 CCGCAGAAGGAGTTTAAGCTGCAGCACATCGGCGAGCGGCTGGACGAGTTCCAGCTAACG 805
consensus_7121#1 ------------------------------------------------------------
consensus_7121#0 GCCAAGGTGAAGCTGCCGGAAGCGCTGAACCTGGTGCTGTCGGCCGCCACCGTCGGCAGC 865
consensus_7121#1 ------------------------------------------------------------
consensus_7121#0 AAGCGCTACCTAACGAACAAGGTGGACCGGTCGGTGACGGGTCTGGTGGCGCAGCAGCAG 925
consensus_7121#1 ------------------------------------------------------------
consensus_7121#0 TGCGTGGGCCCGCTGCACACACCGCTGGCCGACTTCGGGCTTGGTGGCGGTGTCGCACTT 985
consensus_7121#1 ------------------------------------------------------------
consensus_7121#0 TGCCCGCCAAGGCGT 1000
consensus_7121#1 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||