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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7134#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1038 fasta sequence
[TAACGATAGCCCATGCAACTTGTTGGCATTTTCGTTTGAAAAGACAGTAATTCCCTTGCTAGTATTCACTTCCCAACCCCATTTTATACCATTTGGAGGATAAAGTTCGTCAAATCCGCATCCCGGAACCGGCCG-ATGCGTGCCGCGTACGAGATAAAGTGCGCCAGAAACGTCTGATCGTGCACGCGATGCAACAGGTGCGACATTGGGCCGGTGGCATGCACCGTTGCGAACGCCGCATCGCCCTCCCGTGCATCGGAGCGTACCACGACGATCAAACTATCATCGAGCACGGTGCTAAGTTTCCGTAAGGTCGCCTTTACAGCAGCATCCACTTCGGCCGCCCCGATGGGCACGCTCGGATCGGCAATCG-CCACC-AGCACG-AAGCCTTCCGGCCGG-TCCAGCACGTGCAGCGCACCGACGGTCAGATCGTGGAAAGCGTTCGGTTGGGCCAGCGTTTGCCGTTCGAACAGCCCCAGCGCATACTCGCGCTCGTCCAGGGCCGGATCGAGCAGCTCCTTCAGCTCGGTGGCCAGCTTGTAGCTCGTGTCCGCATCTAGCCGCT-CCCC-TCCCACGCCGACTCGAACGCTTCGCGGCAAAACTCTTCCGGACAGGGCAGCGTGCCGGCAATCACGTTCAACGCGCGACCCGTCTCGCCGTACAGTAGCTGCGTGCGTACGTCGGGGCACTGCTGCCCATCCGGACCCACGTACAGCCAGCTCGAGTTGGGTGTGTGCG-CGTACAGGGCCGCCGGGCGTGGGTTGCAC-AAGCTCCCCGTTCGTTACCACCCCGGTCAGACGGCCGACGGCTTGGGCCCACTGCAGGATCGAGGCCGCACGGTGCGTGCTGTTCGGCGGCTCGTTGCAATCGTCCGAAGGTGAAACGGCCGAATCAAACCCAACCGTGTGCCGGTGGCGTGGCTCAATGCCACAAAACATGGCGGTCGGATTGAATGAGACGGAGGCGCCGGCACCGTCCGAGCG-GGTGGGGCGCAGCAAGGCCAGATGGGGAAACGATTCCCAGACGGGTCGCGGATCG]
[-] EMBL CNS09C8G [TAACGATAGCCCATGCAACTTGTTGGCATTTTCGTTTGAAAAGACAGTAATTCCCTTGCTAGTATTCACTTCCCAACCCCATTTTATACCATTTGGAGGATAAAGTTCGTCAAATCTGCATCCCGGAACCGGCCGAATG GTGCCGCGTACGAGATAAAGTGCGCCAGAAACGTCTGATCGTGCACGCGATGCAACAGGTGTGACATTGGGCCGGTGGCATGCACGGTTGCGAACGCCCCATCGCCCTCCCGTGCATCGGAGCGTACCACGACGATCAAACTATCATCGAGCACGGTGCTAAGCTTCCGTAAGGTCGCCTTAACAGCAGCATCCACTTCGGCCGCCCCGATGGGCACGCTCGGATCGGCAATCG CCACC AGCACG CCGCCTTCCGGCCGG TCCAGCACGTGCAGCGCACCGACGGTCAGATCGTGGAAAGCGTTCGGTTGGGCCAGCGTTTGCCGTTCGAACAGCCCCAGCGCATACTCGCGCTCGTCCAGGGCCGGATCGAGCAGCTCCTTCAGCTCAGTGGCCAGCTTGTAGCTCGTGTCCGCATCTAGCCGCTCCCCC TCCCACGCCGACTCGAA AC TCGCGGCAAAACTCTTCCGGACAGGGCAGCGTGCCGGCAATCACGTTCAACGCGCGACCCGTCTCGCCGTACAGTAGCTGCGTGCGTACGTCGGGGCACTGCTGCCCATCCGGACCCACGTACAGCCAGCTCGAGTTGGGTGTGTGCG CGTACAGGGCCG ]
[+] EMBL AGA281286 [ CCATTTTATACCATTTGGAGGATAAAGTTCGTCAAATCCGCATCCCGGAACCGGCCG ATGCGTGCCGCGTACGAGATAAAGTGCGCCAGAAACGTCTGATCGTGCACGCGATGCAACAGGTGCGACATTGGGCCGGTGGCATGCACCGTTGCGAACGCCGCATCGCCCTCCCGTGCATCGGAGCGTACCACGACGATCAAACTATCATCGAGCACGGTGCTAAGTTTCCGTAAGGTCGCCTTTACAGCAGCATCCACTTCGGCCGCCCCGATGGGCACGCTCGGATCGGCAATCG CCACC AGCACG AAGCCTTCCGGCCGG TCCAGCACGTGCAGCGCACCGACGGTCAGATCGTGGAAAGCGTTCGGTTGGGCCAGCGTTTGCCGTTCGAACAGCCCCAGCGCATACTCGCGCTCGTCCAGGGCCGGATCGAGCAGCTCCTTCAGCTCGGTGGCCAGCTTGTAGCTTGTGTCCGCATCTAGCCGCT CCCC TCCCACGCCGACTCGAACGCTTCGCGGCAAAACTCTTCCGGACAGGGCAGCGTGCCGGCAATCACGTTCAACGCGCGACCCGTCTCGCCGTACAGTAGCTGCGTGCGTACGTCGGGGCACTGCTGCCCATCCGGACCCACGTACAGCCAGCTCGAGTTGGGTGTGTGCGCCGTACAGGGCCGCCGGGCGTGGGTTGCACAAAGCTCCCCGTTCGTTACCACCCCGGTCAGACGGCCGACGGCTTGGGCCCACTGCAGGATCGAGGCCGCACGGTGCGTGCTGTTCGGCGGCTCGTTGCAATCGTCCGAAGGTGAAACGGCCGAATCAAACCCAACCGTGTGCCGGTGGCGTGGCTCAATGCCACAAAACATGGCGGTCGGATTGAATGAGA ]
[+] EMBL AGA281893 [ TTTTATACCATTTGGAGGATAAAGTTCGTCAAATCCGCATCCCGGAACCGGCCG ATGCGTGCCGCGTACGAGATAAAGTGCGCCAGAAACGTCTGATCGTGCACGCGATGCAACAGGTGCGACATTGGGCCGGTGGCATGCACCGTTGCGAACGCCGCATCGCCCTCCCGTGCATCGGAGCGTACCACGACGATCAAACTATCATCGAGCACGGTGCTAAGTTTCCGTAAGGTCGCCTTTACAGCAGCATCCACTTCGGCCGCCCCGATGGGCACGCTCGGATCGGCAATCG CCACC AGCACG AAGCCTTCCGGGCGG TCC ]
[-] EMBL BM653351 [ CAGCAGCATCCACTTCGGCCGCCCCGATGGGCACGCTCGGATCGGCAATCGCCCACCAAGCACGAAAGCCTTCCGGTCGGTTCCAGCACGTGCAGCGCACCGACGGTCAGATCGTGGAAAGCGTTCGGTTGGGCCAGCGTTTGCCGTTCGAACAGGCCCAGCGCATACTCGCGCTCGTCCAGGGCCGGATCGAGCAGCTCCTTCAGCTCGGTGGCCAGCTTGTAGCTCGTGTCCGCATCTAGCCGCT CCCCTTCCCACGCCGACTCGAACGCTTCGCGGCAAAACTCTTCCGGACAGGGCAGCGTGCCGGCAATCACGTTCAACGCGCGACCCGTCTCCCCGTACAGTAGCTGCGTGCGTACGTCGGGGCACTGCTGCTCATCCGGACCCACGTACAGCCAGCTCGAGTTGGGTGTGTGCG CGTACAGGGCCG CGGGCGTTGGTTGCAC AAGCTCCCCGTTCGTTACCACCCCGGTCAGACGGCCGACGGCTTGGGCCCACTGCAAGATCGAGGCCGCGCGGTGCGTGCTGTTCGGCGGCTCGTTGCAATCGTCCGAAGGTGAAACGGCCGAATCAAACCCAACCGTGTGCCGGTGACGTGGCTCAATGCCACAAAACATGGCGGTCGGATTGAATGAGACGGAGGCGCCGGCACCGTCCGAGCG G ]
[-] EMBL AGA280197 [ CAC AAGCTCCCCGTTCGTTACCACCCCGGTCAGACGGCCGACGGCTTGGGCCCACTGCAGGATCGAGGCCGCACGGTGCGTGCTGTTCGGCGGCTCGTTGCAATCGTCCGAAGGTGAAACGGCCGAATCAAACCCAACCGTGTGCCGGTGGCGTGGCTCAATGCCACAAAACATGGCGGTCGGATTGAATGAGACGGAGGCGCCGGCACCGTTC AGGGTCGTGGGGCGCAGCAAGGCCAGATGGGGAAACGATTCCCAGACGGGTCGCGGATCG]
consensusID : consensus_7134#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence
[CGACAAAATGATACAGCAAATGACGTTTATTAATTATTTCTTACGTTTCGTACACTACCGTTGATCTTTTAACGATAGCCCATGCAACTTGTTTGCATTTTCGTTTGAAAAGACAGTAATTCCCTTGCTAGTATTCACTTCCCAACCCCATTTTATACCATTTGGAGGATAAAGTTCGTCAAATCCGCATCCCGGAACCGGCCGATGCGTGCCGCGTACGAGATAAAGTGCGCCAGAAACGTCTGATCGTGCACGCGATGCAACAGGTGCGACATTGGGCCGGTGGCATGCACCGTTGCGAACGCCGCATCGCCCTCCCGTGCATCGGAGCGTACCACGACGATCAAACTATCATCGAGCACGGTGCTGGAATGGAAAAGAGAAAACCCATTTTAAGCAGTTCGAGTTCGAACAGAAAGCAAAACACCGGACGCGTGGGCGG]
[-] EMBL BM603517 [CGACAAAATGATACAGCAAATGACGTTTATTAATTATTTCTTACGTTTCGTACACTACCGTTGATCTTTTAACGATAGCCCATGCAACTTGTTTGCATTTTCGTTTGAAAAGACAGTAATTCCCTTGCTAGTATTCACTTCCCAACCCCATTTTATACCATTTGGAGGATAAAGTTCGTCAAATCCGCATCCCGGAACCGGCCGATGCGTGCCGCGTACGAGATAAAGTGCGCCAGAAACGTCTGATCGTGCACGCGATGCAACAGGTGCGACATTGGGCCGGTGGCATGCACCGTTGCGAACGCCGCATCGCCCTCCCGTGCATCGGAGCGTACCACGACGATCAAACTATCATCGAGCACGGTGCTGGAATGGAAAAGAGAAAACCCATTTTAAGCAGTTCGAGTTCGAACAGAAAGCAAAACACCGGACGCGTGGGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7134#0 ------------------------------------------------------------
consensus_7134#1 CGACAAAATGATACAGCAAATGACGTTTATTAATTATTTCTTACGTTTCGTACACTACCG 60
consensus_7134#0 ---------TAACGATAGCCCATGCAACTTGTTGGCATTTTCGTTTGAAAAGACAGTAAT 51
consensus_7134#1 TTGATCTTTTAACGATAGCCCATGCAACTTGTTTGCATTTTCGTTTGAAAAGACAGTAAT 120
************************ **************************
consensus_7134#0 TCCCTTGCTAGTATTCACTTCCCAACCCCATTTTATACCATTTGGAGGATAAAGTTCGTC 111
consensus_7134#1 TCCCTTGCTAGTATTCACTTCCCAACCCCATTTTATACCATTTGGAGGATAAAGTTCGTC 180
************************************************************
consensus_7134#0 AAATCCGCATCCCGGAACCGGCCGATGCGTGCCGCGTACGAGATAAAGTGCGCCAGAAAC 171
consensus_7134#1 AAATCCGCATCCCGGAACCGGCCGATGCGTGCCGCGTACGAGATAAAGTGCGCCAGAAAC 240
************************************************************
consensus_7134#0 GTCTGATCGTGCACGCGATGCAACAGGTGCGACATTGGGCCGGTGGCATGCACCGTTGCG 231
consensus_7134#1 GTCTGATCGTGCACGCGATGCAACAGGTGCGACATTGGGCCGGTGGCATGCACCGTTGCG 300
************************************************************
consensus_7134#0 AACGCCGCATCGCCCTCCCGTGCATCGGAGCGTACCACGACGATCAAACTATCATCGAGC 291
consensus_7134#1 AACGCCGCATCGCCCTCCCGTGCATCGGAGCGTACCACGACGATCAAACTATCATCGAGC 360
************************************************************
consensus_7134#0 ACGGTGCTAAGTTTCCGTAAGGT---CGCCTTTACAGCAGCATCCACTTCGGCCGCCCCG 348
consensus_7134#1 ACGGTGCTGGAATGGAAAAGAGAAAACCCATTTTAAGCAGT-TCGAGTTCGAACAGAAAG 419
******** * * * * * *** ***** ** * **** * *
consensus_7134#0 ATGGGCAC-GCTCGGATCGGCAATCGCCACCAGCACGAAGCCTTCCGGCCGGTCCAGCAC 407
consensus_7134#1 CAAAACACCGGACGCGTGGGCGG------------------------------------- 442
*** * ** * ***
consensus_7134#0 GTGCAGCGCACCGACGGTCAGATCGTGGAAAGCGTTCGGTTGGGCCAGCGTTTGCCGTTC 467
consensus_7134#1 ------------------------------------------------------------
consensus_7134#0 GAACAGCCCCAGCGCATACTCGCGCTCGTCCAGGGCCGGATCGAGCAGCTCCTTCAGCTC 527
consensus_7134#1 ------------------------------------------------------------
consensus_7134#0 GGTGGCCAGCTTGTAGCTCGTGTCCGCATCTAGCCGCTCCCCTCCCACGCCGACTCGAAC 587
consensus_7134#1 ------------------------------------------------------------
consensus_7134#0 GCTTCGCGGCAAAACTCTTCCGGACAGGGCAGCGTGCCGGCAATCACGTTCAACGCGCGA 647
consensus_7134#1 ------------------------------------------------------------
consensus_7134#0 CCCGTCTCGCCGTACAGTAGCTGCGTGCGTACGTCGGGGCACTGCTGCCCATCCGGACCC 707
consensus_7134#1 ------------------------------------------------------------
consensus_7134#0 ACGTACAGCCAGCTCGAGTTGGGTGTGTGCGCGTACAGGGCCGCCGGGCGTGGGTTGCAC 767
consensus_7134#1 ------------------------------------------------------------
consensus_7134#0 AAGCTCCCCGTTCGTTACCACCCCGGTCAGACGGCCGACGGCTTGGGCCCACTGCAGGAT 827
consensus_7134#1 ------------------------------------------------------------
consensus_7134#0 CGAGGCCGCACGGTGCGTGCTGTTCGGCGGCTCGTTGCAATCGTCCGAAGGTGAAACGGC 887
consensus_7134#1 ------------------------------------------------------------
consensus_7134#0 CGAATCAAACCCAACCGTGTGCCGGTGGCGTGGCTCAATGCCACAAAACATGGCGGTCGG 947
consensus_7134#1 ------------------------------------------------------------
consensus_7134#0 ATTGAATGAGACGGAGGCGCCGGCACCGTCCGAGCGGGTGGGGCGCAGCAAGGCCAGATG 1007
consensus_7134#1 ------------------------------------------------------------
consensus_7134#0 GGGAAACGATTCCCAGACGGGTCGCGGATCG 1038
consensus_7134#1 -------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||