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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7146#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1350 fasta sequence
[TTATGCGAGTTAATGTGCAGTGTTGTTGCGATTTAGTTGTTTGTACACACAGTTTTACTTTTGTGTGCTGGTTGATGTTCGCTAAACGATTTGCTTTACAAAAACAAAACACACACACATACACACACACACACAATCGATGGGTCAATTTTTGAAGCGACACAAACATGTACTTGCTTAATGTGAAACCCCCTTGCTCGCTAGTGTTACGCACTTAGTATAGGGTTTAGTTTAGTATAGTTTGAGCGAACGCGCTCCAGAAAATGAAACAGTAAAACGGTACCGACGAAACGAAATTGGCACGGTAGAAAGAGTGAGAGTGAGAAAGTGGCAAGTGTGGATGGGGAGGAAAGCGAAAGCGGAATAATGTAACCGTTCTATTGCAATTGAAAACCGACCTGTAAACAATTATGTGGTGATATAAACGTAATTATAAATGGATATATTAGGTATACATGAGGATATATGTTTTGGTTTTAAACAAGCAAGCGAAGTAGAGAGGGGGGAGCAGAGTACAGTCAGGCTAAGAATTGTGTGTTTAAGAGTGTGCAGCCGCGACGCAGCTGCGAGAATGATGCTACTCTGCAACAGTAAAACAAAGAAAAAACAGAAGCAAACAAACAAACAAATACAGAACGAACAACCAACAGCCGTACTAGCCTATGCCTGCATGTGCATGAAAATAGATCGAAAACCCCCCCATTTCACACGCGAAGGGCGATGATAAGGGCAACATGATGATAGCAACACAAAACATAATGCACGCACTTCCAATACAGAAACCCGCCTCACCTGTTCGTGTCGTTAACATTTAGCCAGTCTTAGTCATACACACACATACACATACACACAGACACACGTGAATTACGGCAATTTAAGCAGTGCAAAATGGGCCAAATTAACCCAACACTGCATACAATCTAGCTTTCTCGCGTACGACGCCAACCGAGCTGTTGAATGTATATGTCCCTTTTTAAACACTTTAACGGTCTACGTGGCGCTACACAAAGCTGACTGGGCTTAGGGGTACGCTGCATCACAGGAGCATAGAAAAGACATTGAAGCCCGAAATACACACACACACACACGATTATCCAATCTGTGGAGTAACCTGCTGTTACGAAACAGCCTATTGGAGGTGTGTGTGCGTGTGTGCGTGATCGTGAATGAAAGAGCAAAACAAAACTACCGGAAGAACAAAAGCCAGCAGAAGAGTATTTTTAACAGAAGTGAAAACAACAAAAAACGTTTGTGCCATGCCTGTAAAAGTGGAAAAGAAG-AAAAAAAGAAGAAGAGCGGATTGATACGCTTGGAGAGCAAACTCATCCCAAGGGAAAGAAAGGCGAAGAG]
[+] EMBL BX626867 [TTATGCGAGTTAATGTGCAGTGTTGTTGCGATTTAGTTGTTTGTACACACAGTTTTACTTTTGTGTGCTGGTTGATGTTCGCTAAACGATTTGCTTTACAAAAACAAAACACACACACATACACACACACACACAATCGATGGGTCAATTTTTGAAGCGACACAAACATGTACTTGCTTAATGTGAAACCCCCTTGCTCGCTAGTGTTACGCACTTAGTATAGGGTTTAGTTTAGTATAGTTTGAGCGAACGCGCTCCAGAAAATGAAACAGTAAAACGGTACCGACGAAACGAAATTGGCACGGTAGAAAGAGTGAGAGTGAGAAAGTGGCAAGTGTGGATGGGGAGGAAAGCGAAAGCGGAATAATGTAACCGTTCTATTGCAATTGAAAACCGACCTGTAAACAATTATGTGGTGATATAAACGTAATTATAAATGGATATATTAGGTATACATGAGGATATATGTTTTGGTTTTAAACAAGCAAGCGAAGTAGAGAGGGGGGAGCAGAGTACAGTCAGGCTAAGAATTGTGTGTTTAAGAGTGTGCAGCCGCGACGCAGCTGCGAGAATGATGCTACT ]
[+] EMBL BX625888 [ ATTGTGTGTTTAAGAGTGTGCAGCCGCGACGCAGCTGCGAGAATGATGCTACTCTGCAACAGTAAAACAAAGAAAAAACAGAAGCAAACAAACAAACAAATACAGAACGAACAACCAACAGCCGTACTAGCCTATGCCTGCATGTGCATGAAAATAGATCGAAAACCCCCCCATTTCACACGCGAAGGGCGATGATAAGGGCAACATGATGATAGCAACACAAAACATAATGCACGCACTTCCAATACAGAAACCCGCCTCACCTGTTCGTGTCGTTAACATTTAGCCAGTCTTAGTCATACACACACATACACATACACACAGACACACGTGAATTACGGCAATTTAAGCAGTGCAAAATGGGCCAAATTAACCCAACACTGCATACAATCTAGCTTTCTCGCGTACGACGCCAACCGAGCTGTTGAATGTATATGTCCCTTTTTAAACACTTTAACGGTCTACGTGGCGCTACACAAAGCTGACTGGGCTTAGGGGTACGCTGCATCACAGGAGCATAGAAAAGACATTGAAGCCCGAAATACACACACACACACACGATTATCCAATCTGTGGAGTAACCTGCTGTTACGAAACAGCCTATTGGAGGTGTGTGTGCGTGTGTGCGTGATCGTGAATGAAAGAGCAAAACAAAACTACCGGAAGAACAAAAGCCAGCAGAAGAGTATTTTTAACAGAAGTGAAAACAACAAAAAACGTTTGTGCCATGCCTGTAAAAGTGGAAAAGAAG AAAAAAAGAAGAAGAGCGGATTGATACGCTTGGAGAGCAAACTCATCCCAAGGGAAAGAAAGGCGAAGAG]
[+] EMBL AL933285 [ ccgaggttaCCAATACAGAAA CCGCCTCACCTG TCGTGTCGTTAACATTTAGCCAGTCTTAGTCATACACACACATACACATACACACAGACACACGTGAATTACGGCAATTTAAGCAGTGCAAAATGGGCCAAATTAACCCAACACTGCATACAATCTAGCTTTCTCGCGTACGACGCCAACCGAGCTGTTGAATGTATATGTCCCTTTTTAAACACTTTAACGGTCTACGTGGCGCTACACAAAGCTGACTGGGCTTAGGGGTACGCTGCATCACAGGAGCATAGAAAAGACATTGAAGCCCGAAATACACACACACACACACGATTATCCAATCTGTGGAGTAACCTGCTGTTACGAAACAGCCTATTGGAGGTGTGTGTGCGTGTGTGCGTGATCGTGAATGAAAGAGCAAAACAAAACTACCGGAAGAACAAAAGCCAGCAGAAGAGTATTTTTAACAGAAGTGAAAACAACAAAAAACGTTTGTGCCATGCCTGTAAAAGTGGAAAAG ]
[+] EMBL BX618513 [ GTTAACATTTAGCCAGTCTTAGTCATACACACACATACACATACACACAGACACACGTGAATTACGGCAATTTAAGCAGTGCAAAATGGGCCAAATTAACCCAACACTGCATACAATCTAGCTTTCTCGCGTACGACGCCAACCGAGCTGTTGAATGTATATGTCCCTTTTTAAACACTTTAACGGTCTACGTGGCGCTACACAAAGCTGACTGGGCTTAGGGGTACGCTGCATCACAGGAGCATAGAAAAGACATTGAAGCCCGAAATACACACACACACACACGATTATCCAATCTGTGGAGTAACCTGCTGTTACGAAACAGCCTATTGGAGGTGTGTGTGCGTGTGTGCGTGATCGTGAATGAAAGAGCAAAACAAAACTACCGGAAGAACAAAAGCCAGCAGAAGAGTATTTTTAACAGAAGTGAAAACAACAAAAAACGTTTGTGCCATGCCTGTAAAAGTGGAAAAGAAGAAAAAAAAGAAGAAGAGCGGATTGATACGCTTGGAGAGCAAACTCATCCCAAGGGAAAGAAAGGCGAAGA ]
consensusID : consensus_7146#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence
[AGAGGGGGGAGCAGAGTACAGTCAGGCTAAGAATTGTGTGTTTAAGAGTGTGCAGCCGCGACGCAGCTGCGAGAATGATGCTACTCTGCAACAGTAAAACAAAGAAAAAACAGAAGCAAACAAACAAACAAATACAGAACGAACAACCAACAGCCGTACTAGCCTATGCCTGCATGTGCATGAAAATAGATCGAAAACCCCCCCATTTCACACGCGAAGGGCGATGATAAGGGCAACATGATGATAGCAACACAAAACATAATGCACGCACTTCCAATACAGAAACCCGCCTCACCTGTTCGTGTCGTTAACATTTAGCCAGTCTTAGTCATACACACACATACACATACACACAGACACACGTGAATTACGGCAATTTAAGCAGTGCAAAATGGGCCAAATTAACCCAACACTGCATACAATCTAGCTTTCTCGCGTACGACGCCAACCGAGCTGTTGAATGTATATGTCCCTTTTTAAACACTTTAACGGTCTACGTGGCGCTACACAAAGCTGACTGGGCTTAGGGGTACGCTGCATCACAGGAGCATAAAAAAGACATACTCACACACACACACATATGACGAGTAATGTGACGATTAGTAAACACGCATAGGAAAGCTATTCAAAAAAAGAAAACAAGGCAAGTAACCAACCAAGCAAA]
[+] EMBL BX617447 [AGAGGGGGGAGCAGAGTACAGTCAGGCTAAGAATTGTGTGTTTAAGAGTGTGCAGCCGCGACGCAGCTGCGAGAATGATGCTACTCTGCAACAGTAAAACAAAGAAAAAACAGAAGCAAACAAACAAACAAATACAGAACGAACAACCAACAGCCGTACTAGCCTATGCCTGCATGTGCATGAAAATAGATCGAAAACCCCCCCATTTCACACGCGAAGGGCGATGATAAGGGCAACATGATGATAGCAACACAAAACATAATGCACGCACTTCCAATACAGAAACCCGCCTCACCTGTTCGTGTCGTTAACATTTAGCCAGTCTTAGTCATACACACACATACACATACACACAGACACACGTGAATTACGGCAATTTAAGCAGTGCAAAATGGGCCAAATTAACCCAACACTGCATACAATCTAGCTTTCTCGCGTACGACGCCAACCGAGCTGTTGAATGTATATGTCCCTTTTTAAACACTTTAACGGTCTACGTGGCGCTACACAAAGCTGACTGGGCTTAGGGGTACGCTGCATCACAGGAGCATAAAAAAGACATACTCACACACACACACATATGACGAGTAATGTGACGATTAGTAAACACGCATAGGAAAGCTATTCAAAAAAAGAAAACAAGGCAAGTAACCAACCAAGCAAA]
consensusID : consensus_7146#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence
[NTACGATTCCATTGATAATAAATGCTTGATGTGTTTTTTGCGCAGCATAGGAAGCAGATTGGTAGGTGTNTGTGTGTGTGTGCGCGCGCCGTGCGAGGAGCGGGTAATGCGCTATCGTAGGAAGGGCGCGCGCTGGCGGGCAAAGCATAGCTTAAGCACAAGAGTACAGCAGTATCTTAACAGTTTTTCAACAGCAAAAAATCGCATTACAGATAGAGGAAAAAAGAGACGGAAACAGTAAAACGGTACCGACGTAAACGAAATTGGCACGGTAGAAAGAGTGAGAGTGAGAAAGTGGCAAGTGTGGATGGGGAGGAAAGCGAAACGGAATAATGTAACCGTTCTATTGCAATTGAAAACCGACCTGTAAACAATTATGTGGTGATATAAACGTAATTATAAATGGATATATTAGGTATACATGAGGATATATGTTTTTGTTTTAAACAAGCAAGCGAAGTAGAGAGGGGGGAGCAGAGTACAGTCAGGCTAAGAATTGTGTGTTTAAGGGTGGTGCAGCCGGGACGCAGCTGCGAGAATGATGTTACTCTGCAACAGTAAGANAGAAGGANANAAGATAACCTCGGGGGATTGTGGCGTGAGGCATGGGGG]
[-] EMBL AL934905 [NTACGATTCCATTGATAATAAATGCTTGATGTGTTTTTTGCGCAGCATAGGAAGCAGATTGGTAGGTGTNTGTGTGTGTGTGCGCGCGCCGTGCGAGGAGCGGGTAATGCGCTATCGTAGGAAGGGCGCGCGCTGGCGGGCAAAGCATAGCTTAAGCACAAGAGTACAGCAGTATCTTAACAGTTTTTCAACAGCAAAAAATCGCATTACAGATAGAGGAAAAAAGAGACGGAAACAGTAAAACGGTACCGACGTAAACGAAATTGGCACGGTAGAAAGAGTGAGAGTGAGAAAGTGGCAAGTGTGGATGGGGAGGAAAGCGAAACGGAATAATGTAACCGTTCTATTGCAATTGAAAACCGACCTGTAAACAATTATGTGGTGATATAAACGTAATTATAAATGGATATATTAGGTATACATGAGGATATATGTTTTTGTTTTAAACAAGCAAGCGAAGTAGAGAGGGGGGAGCAGAGTACAGTCAGGCTAAGAATTGTGTGTTTAAGGGTGGTGCAGCCGGGACGCAGCTGCGAGAATGATGTTACTCTGCAACAGTAAGANAGAAGGANANAAGATAACCTCGGGGGATTGTGGCGTGAGGCATGGGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7146#0 TTATGCGAGTTAATGTGCAGTGTTGTTGCGATTTAGTTGTTTGTACACACAGTTTTACTT 60
consensus_7146#1 ------------------------------------------------------------
consensus_7146#2 ------------------------------------------------------------
consensus_7146#0 TTGTGTGCTGGTTGATGTTCGCTAAACGATTTGCTTTACAAAAACAAAACACACACACAT 120
consensus_7146#1 ------------------------------------------------------------
consensus_7146#2 ------------------------------------------------------------
consensus_7146#0 ACACACACACACACAATCGATGGGTCAATTTTTGAAGCGACACAAACATGTACTTGCTTA 180
consensus_7146#1 ------------------------------------------------------------
consensus_7146#2 ------------------------------------------------------------
consensus_7146#0 ATGTGAAACCCCCTTGCTCGCTAGTGTTACGCACTTAGTATAGGGTTTAGTTTAGTATAG 240
consensus_7146#1 ------------------------------------------------------------
consensus_7146#2 ------------------------------------------------------------
consensus_7146#0 TTTGAGCGAACGCGCTCCAGAAAATGAAACAGTAAAACGGTACCGACGAAACGAAATTGG 300
consensus_7146#1 ------------------------------------------------------------
consensus_7146#2 ------------------------------------------------------------
consensus_7146#0 CACGGTAGAAAGAGTGAGAGTGAGAAAGTGGCAAGTGTGGATGGGGAGGAAAGCGAAAGC 360
consensus_7146#1 ------------------------------------------------------------
consensus_7146#2 ------------------------------------------------------------
consensus_7146#0 GGAATAATGTAACCGTTCTATTGCAATTGAAAACCGACCTGTAAACAATTATGTGGTGAT 420
consensus_7146#1 ------------------------------------------------------------
consensus_7146#2 ------------------------------------------------------------
consensus_7146#0 ATAAACGTAATTATAAATGGATATATTAGGTATACATGAGGATATATGTTTTGGTTTTAA 480
consensus_7146#1 ------------------------------------------------------------
consensus_7146#2 ------------------------------------------------------------
consensus_7146#0 ACAAGCAAGCGAAGTAGAGAGGGGGGAGCAGAGTACAGTCAGGCTAAGAATTGTGTGTTT 540
consensus_7146#1 -----------------AGAGGGGGGAGCAGAGTACAGTCAGGCTAAGAATTGTGTGTTT 43
consensus_7146#2 --------------------------------NTACGATTCCATTGATAAT-AAATGCTT 27
*** * * * *** ** **
consensus_7146#0 AAGAGTGTGCAGCCGCGACGCAGCTGCGAGAATGATGCTACTCTGCAACAGTAAAACAAA 600
consensus_7146#1 AAGAGTGTGCAGCCGCGACGCAGCTGCGAGAATGATGCTACTCTGCAACAGTAAAACAAA 103
consensus_7146#2 GATGTGTTTTTTGCGCAGCATAGGAAGCAGATTGGTAGGTGTNTGTGTGTGTGTGCGCGC 87
* * *** * ** *** ** * * ** **
consensus_7146#0 GAAAAAACAGAAGCAAACAAACAAACAAATACAGAACGAACAACCAACAGCCGTACTAGC 660
consensus_7146#1 GAAAAAACAGAAGCAAACAAACAAACAAATACAGAACGAACAACCAACAGCCGTACTAGC 163
consensus_7146#2 GCCGTGCGAGGAGCGGGTAA-TGCGCTATCGTAGGAAGGGCGCGCGCTGGCGGGCAAAGC 146
* ** *** ** * * ** * * * * ** * ***
consensus_7146#0 CTATGCCTGCATGTGCATGAAAATAGATCGAAAACCCCCCCATTTCACAC--GCGAAGGG 718
consensus_7146#1 CTATGCCTGCATGTGCATGAAAATAGATCGAAAACCCCCCCATTTCACAC--GCGAAGGG 221
consensus_7146#2 ATA-----GCTTAAGCACAAGAGTACAGCAGTATCTTAACAGTTTTTCAACAGCAAAAAA 201
** ** * *** * * ** * * * * * *** ** ** **
consensus_7146#0 CGATGATAAGGGCAACATGATGATAGCAACACAAAACATAATGCACGCACTTCCAATACA 778
consensus_7146#1 CGATGATAAGGGCAACATGATGATAGCAACACAAAACATAATGCACGCACTTCCAATACA 281
consensus_7146#2 TCGCATTACAGATAG-AGGAAAAAAGAGACGGAAACAGTAAAACG-GTACC-----GACG 254
** * * * ** * ** ** *** *** * * ** **
consensus_7146#0 GAAACCCGCCTCACCTGTTCGTGTCGTTAACATTTAGCCAGTCTTAGTCATACACACACA 838
consensus_7146#1 GAAACCCGCCTCACCTGTTCGTGTCGTTAACATTTAGCCAGTCTTAGTCATACACACACA 341
consensus_7146#2 TAAACGAAATTGGCACGGTAGAAAGAGTGAGAGTGAGAAAGTGGCAAGTGTGGATGGGGA 314
**** * * * * * * * * * ** *** * * * *
consensus_7146#0 TACACATACACACAGACACACGTGAATTACGGCAATTTAAGCAGTGCAAAATGGGCCA-- 896
consensus_7146#1 TACACATACACACAGACACACGTGAATTACGGCAATTTAAGCAGTGCAAAATGGGCCA-- 399
consensus_7146#2 GGAAAGCGAA-ACGGAATAATGT-AACCGTTCTATT----GCAATTGAAAACCGACCTGT 368
* * ** ** * ** ** * * *** * **** * **
consensus_7146#0 AATTAACCCAACACTGCATACAATCTAGCTTTCTCGCGTACGACGCCAACCGAGCTGTTG 956
consensus_7146#1 AATTAACCCAACACTGCATACAATCTAGCTTTCTCGCGTACGACGCCAACCGAGCTGTTG 459
consensus_7146#2 AAACAATTATGTGGTG-ATATAAACGTAATTATAAATGGAT-ATATTAGGTATAC--ATG 424
** ** ** *** ** * ** * * * * * **
consensus_7146#0 AATGTATATGTCCCT-TTTTAAACACTTTAACGGTCTACGTGGCGCTACACAAAGCTGAC 1015
consensus_7146#1 AATGTATATGTCCCT-TTTTAAACACTTTAACGGTCTACGTGGCGCTACACAAAGCTGAC 518
consensus_7146#2 AGGATATATGTTTTTGTTTTAAACAAGCAAGCGAAGTAGAGAGGGGGGAGCAGAGTACAG 484
* ******* * ********* * ** ** * * ** ** *
consensus_7146#0 TGGGCTTAGGGGTACGCTGCATCACAGGAGCATAGAAAAGACATTGAAGCCCGAAATACA 1075
consensus_7146#1 TGGGCTTAGGGGTACGCTGCATCACAGGAGCATAAAAAAGACAT---------ACTCACA 569
consensus_7146#2 TCAGGCTAAGAATTGTGTGTTTAAGGGTGGTGCAGCCGGGACG----------------- 527
* * ** * * ** * * * * * ***
consensus_7146#0 CACACACACACACGATTATCCAATCTGTGGAGTAACCTGCTGT-TACGAAACAGCCTATT 1134
consensus_7146#1 CACACACACATATGACGAGT-AATGTGACGATTAGTAAACACG-CATAGGAAAGC-TATT 626
consensus_7146#2 CAGCTGCGAGAATGATGTTACTCTGCAACAGTAAGANAGAAGGANANAAGATAACCTCGG 587
** * * ** * * * * * * *
consensus_7146#0 GGAGGTGTGTGTGCGTGTGTGCGTGATCGTGAATGAAAGAGCAAAACAAAACTACCGGAA 1194
consensus_7146#1 CAAAAAAAGAAAACAAG-GCAAGTAACCAACCAAGCAAA--------------------- 664
consensus_7146#2 GGGATTGTGGCGTGAGGCATGGGGG----------------------------------- 612
* * *
consensus_7146#0 GAACAAAAGCCAGCAGAAGAGTATTTTTAACAGAAGTGAAAACAACAAAAAACGTTTGTG 1254
consensus_7146#1 ------------------------------------------------------------
consensus_7146#2 ------------------------------------------------------------
consensus_7146#0 CCATGCCTGTAAAAGTGGAAAAGAAGAAAAAAAGAAGAAGAGCGGATTGATACGCTTGGA 1314
consensus_7146#1 ------------------------------------------------------------
consensus_7146#2 ------------------------------------------------------------
consensus_7146#0 GAGCAAACTCATCCCAAGGGAAAGAAAGGCGAAGAG 1350
consensus_7146#1 ------------------------------------
consensus_7146#2 ------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||