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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7148#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 854 fasta sequence
[AATNCCCGAGGTTAAT-CTCCCTTTGAACAGCATTGGTTCGTCTCTGATACAGCAACGATGGAGAAGTGGGTTGGCAAGATAGCGCTGGTAACGGGCGCCAGCTCGGGCATCGGACAGGATGTGGCACTTACGCTAGCGGACGCGGGCATGATCGTGGTAGGGATAGCGCGCCGTGCCGAGCTCGTCACGCTACTCTCCACCAAGGTGACTGGCGGTGGTAAGATTTACGCCAAAAAGTGTGATGTGAGCAACGAGGGAGAAATAATGGAAACGCTCAACTGGATCCGCCGCGAGTTCGGTGGCGTTGATGTGCTGATCAATAATGCAGGCATTTATCGCTATCAATTTATCACGCAGAGTGAAACGTCCGATTTTCGCGACACCTTCAACGTGAACGTGCTGGCGACGTGCATTNTCATTCGCGAAGTGGTAAAGGACATGCAGGCAAGGGAAGCGTACGGTCACATCGTGGTGCTGAACAGCTTGCTGGGCAAACGCGTCCCGGACGTATCGGTG-CCGTGTTCGGCGCTGTATCCNGCATCCAAGTTTGCGTNCGTTCGGGATGACGGAAGTGTTGCGGCAAGAGTTAAACTTCCTCAAGATTGGCCCATCAAAGTTAACGGAGCATTCCATCCCTGGCATGGGTGCAACGACNTGATCAAGGTGGTCAGGAGTCGAAGCTNACGGNACGACTACCAAAAGCTCAGGTGAGGGACATTACGGCAGCATCGNGCATTGCCTTGTCNAGACTCCNGAANTCGNAATCNCATGACAGACCATNAGGCACGAAGCAGAAAGGCGGGCACGCGAAGGTTCGGCATGTGTGCCACCACNCAATCATACATTTTGGATGT]
[+] EMBL AL933338 [AATNCCCGAGGTTAAT CTCCCTTTGAACAGCATTGGTTCGTCTCTGATACAGCAACGATGGAGAAGTGGGTTGGCAAGATAGCGCTGGTAACGGGCGCCAGCTCGGGCATCGGACAGGATGTGGCGCTTACGCTAGCGGACGCGGGCATGATCGTGGTAGGGATAGCGCGCCGCGCCGAGCTCGTCACGCTGCTCTCCACCAAGGTGACCGGCGGCGGTAAGATTTACGCCAAAAAGTGTGATGTGAGCAACGAGGGAGAAATAATGGAAACGCTCAACTGGATCCGCCGCGAGTTCGGTGGCGTTGATGTGCTGATCAATAATGCAGGCATTTATCGCTATCAATTTATCACGCAGAGTGAAACGTCCGATTTTCGCGACACCTTCAACGTGAACGTGCTGGCGACGTGCATTNTCATTCGCGAAGTGGTAAAGGACATGCAGGCAAGGGAAGCGTACGGTCACATCGTGGTGCTGAACAGCTTGCTGGGCAAACGCGTCCCGGACGTATCGGTG CCGTGTTCGGCGCTGTATCCNGCATCCAAGTTTGCGTNCGTTCGGGATGACGGAAGTGTTGCGGCAAGAGTTAAACTTCCTCAAGATTGGCCCATCAAAGTTAACGGAGCATTCCATCCCTGGCATGGGTGCAACGACNTGATCAAGGTGGTCAGGAGTCGAAGCTNACGGNACGACTACCAAAAGCTCAGGTGAGGGACATTACGGCAGCATCGNGCATTGCCTTGTCNAGACTCCNGAANTCGNAATCNCATGACAGACCATNAGGCACGAAGCAGAAAGGCGGGCACGCGAAGGTTCGGCATGTGTGCCACCACNCAATCATACATTTTGGATGT]
[+] EMBL BM628398 [ CCG GGTTGATCCTCCCTTTGAACAGCATTGGTTCGTCTCTGATACAGCAACGATGGAGAAGTGGGTTGGCAAGATAGCGCTGGTAACGGGCGCCAGCTCGGGCATCGGACAGGATGTGGCACTTACGCTAGCGGACGCGGGCATGATCGTGGTAGGGATAGCGCGCCGTGCCGAGCTCGTCACGCTACTCTCCACCAAGGTGACTGGCGGTGGTAAGATTTACGCCAAAAAGTGTGATGTGAGCAA ]
[+] EMBL BM620236 [ ccg CTCCCTTTGAACAGCATTGGTTCGTCTCTGATACAGCAACGATGGAGAAGTGGGTTGGCAAGATAGCGCTGGTAACGGGCGCCAGCTCGGGCATCGGACAGGATGTGGCACTTACGCTAGCGGACGCGGGCATGATCGTGGTAGGGATAGCGCGCCGTGCCGAGCTCGTCACGCTACTCTCCACCAAGGTGACTGGCGGTGGTAAGATTTACGCCAAAAAGTGTGATGTGAGCAACGAGGGAGAAATAATGGAAACGCTCAACTGGATCCGCCGCGAGTTCGGTGGCGTTGATGTGCTGATCAATAATGCAGGCATTTATCGCTATCAATTTATCACGCAGAGTGAAACGTCCGATTTTCGCGACACCTTCAACGTGAACGTGCTGGCGACGTGCATTTTCATTCGCGAAGTGGTAAAGGACATGCAGGCAAGGGAAGCGTACGGTCACATCGTGGTGCTGAACAGCTTGCTGGGCAAACGCGTCCCGGACGTATCGGTGCCCGTGTTCGGCG TGTATCCGGCATCCAAGTTTGCGCTCGTT GGGATGACGGAAGTGTTGCGGCAAGAGTTAAACTTCCTCAA ATT GCCCATCAAAGTT AC GAGCATT CAT CCTGGCA ]
consensusID : consensus_7148#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence
[AATAATGGAAACGCTCAACTGGATCCGCCGCGAGTTCGGTGGCGTTGATGTGCTGATCAATAATGCAGGCATTTATCGCTATCAATTTATCACGCAGAGTGAAACGTCCGATTTTCGCGACACCTTCAACGTGAACGTGCTGGCGACGTGCATTTTCATTCGCGAAGTGGTAAAGGACATGCAGGTAAGGGAAGCGTACGGTCACATCGTGGTGCTGAACAGCTTGCTGGGCAAACGCGTCCCGGACGTATCGGTGCCCATGTTCGGCGTGTATCCGGCATCCAAGTTTGCGCTCGTTGGGATGACGGAAGTGTTGCGGCAAGAGTTAAACTTCCTCAAATTGCCCATCAAAGTTACGAGCATTCATCCTGGCATGGTGCAGACGGACATGATCAAGGTGTTCGAGTCGAAGCTAGCGGAACGACTACCAAAGCTCCAGGTGACGGACATTACCGCCAGCATCGTGCATTGCCTTGCAACACCTCCCGAAGTTCGTATCGATGAGCTGACCATTATGCCAACCATGCAGTAAAAGGCCGTGGCCGCCAGCAAAAGGTAACCGTTGATTTGTTGTACAACACAAACGCAGAATTCAA]
[+] EMBL BX611078 [AATAATGGAAACGCTCAACTGGATCCGCCGCGAGTTCGGTGGCGTTGATGTGCTGATCAATAATGCAGGCATTTATCGCTATCAATTTATCACGCAGAGTGAAACGTCCGATTTTCGCGACACCTTCAACGTGAACGTGCTGGCGACGTGCATTTTCATTCGCGAAGTGGTAAAGGACATGCAGGTAAGGGAAGCGTACGGTCACATCGTGGTGCTGAACAGCTTGCTGGGCAAACGCGTCCCGGACGTATCGGTGCCCATGTTCGGCGTGTATCCGGCATCCAAGTTTGCGCTCGTTGGGATGACGGAAGTGTTGCGGCAAGAGTTAAACTTCCTCAAATTGCCCATCAAAGTTACGAGCATTCATCCTGGCATGGTGCAGACGGACATGATCAAGGTGTTCGAGTCGAAGCTAGCGGAACGACTACCAAAGCTCCAGGTGACGGACATTACCGCCAGCATCGTGCATTGCCTTGCAACACCTCCCGAAGTTCGTATCGATGAGCTGACCATTATGCCAACCATGCAGTAAAAGGCCGTGGCCGCCAGCAAAAGGTAACCGTTGATTTGTTGTACAACACAAACGCAGAATTCAA]
consensusID : consensus_7148#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 539 fasta sequence
[GGCATCGGACAGGATGTGGCGCTTACGCTAGCGGACGCGGGCATGATCGTGGTAGGGATAGCGCGCCGTGCCGAGCTCGTCACGCTACTCTCCACCAAGGTGACCGGCGGCGGTAAGATTTACGCCAAAAAGTGTGATGTGAGCAACGAGGGAGAAATAATGGAAACGCTCAACTGGATCCGCCGCGAGTTCGGTGGCGTTGATGTGCTGATCAATAATGCAGGCATTTATCGCTATCAATTTATCACGCAGAGTGAAACGTCCGATTTTCGCGACACCTTCAACGTGAACGTGCTGGCGACGTGCATTTTCATTCGCGAAGTGGTAAAGGACATGCAGGTAAGGGAAGCGTACGGTCACATCGTGGTGCTGAACAGCTTGCTGGGCAAACGCGTCCCGGACGTATCGGTGCCCATGTTCGGCGTGTATCCGGCATCCAAGTTTGCGCTCGTTGGGATGACGGAAGTGTTGCGGCAAGAGTTAAACTTCCTCAAATTGCCCATCAAAGTTACGGTAAGATTGGTTAGCGGCTGTGCACA]
[+] EMBL BX608789 [GGCATCGGACAGGATGTGGCGCTTACGCTAGCGGACGCGGGCATGATCGTGGTAGGGATAGCGCGCCGTGCCGAGCTCGTCACGCTACTCTCCACCAAGGTGACCGGCGGCGGTAAGATTTACGCCAAAAAGTGTGATGTGAGCAACGAGGGAGAAATAATGGAAACGCTCAACTGGATCCGCCGCGAGTTCGGTGGCGTTGATGTGCTGATCAATAATGCAGGCATTTATCGCTATCAATTTATCACGCAGAGTGAAACGTCCGATTTTCGCGACACCTTCAACGTGAACGTGCTGGCGACGTGCATTTTCATTCGCGAAGTGGTAAAGGACATGCAGGTAAGGGAAGCGTACGGTCACATCGTGGTGCTGAACAGCTTGCTGGGCAAACGCGTCCCGGACGTATCGGTGCCCATGTTCGGCGTGTATCCGGCATCCAAGTTTGCGCTCGTTGGGATGACGGAAGTGTTGCGGCAAGAGTTAAACTTCCTCAAATTGCCCATCAAAGTTACGGTAAGATTGGTTAGCGGCTGTGCACA]
consensusID : consensus_7148#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence
[GAGCAACGAGGGAGAAATAATGGAAACGCTCAACTGGATCCCCCGCGAGTTCGGTGGCGTTGATGTGCTGATCAATAATGCAGGCATTTATCGCTATCAATTTATCACGCGTAAGTGTGGAAAGGATAGTACACGAAAAAAAAAAAAAATAGAAAAACTCCATTGGTTCGTTACAATTCCAGAGAGTGAAACGTCCGATTTTCGCGACACCTTCAACGTGAACGTGCTGGCGACGTGCATTTTCATTCGCGAAGTGGTAAAGGACATGCAGGCAAGGGAAGCGTACGGTCACATCGTGGTGCTGAACAGCTTGCTGGGCAAACGCGTCCCGGACGTATCGGTGCCCGTGCGG]
[-] EMBL BM605829 [GAGCAACGAGGGAGAAATAATGGAAACGCTCAACTGGATCCCCCGCGAGTTCGGTGGCGTTGATGTGCTGATCAATAATGCAGGCATTTATCGCTATCAATTTATCACGCGTAAGTGTGGAAAGGATAGTACACGAAAAAAAAAAAAAATAGAAAAACTCCATTGGTTCGTTACAATTCCAGAGAGTGAAACGTCCGATTTTCGCGACACCTTCAACGTGAACGTGCTGGCGACGTGCATTTTCATTCGCGAAGTGGTAAAGGACATGCAGGCAAGGGAAGCGTACGGTCACATCGTGGTGCTGAACAGCTTGCTGGGCAAACGCGTCCCGGACGTATCGGTGCCCGTGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7148#0 AATNCCCGAGGTTAATCTCCCTTTGAACAGCATTGGTTCGTCTCTGATACAGCAACGATG 60
consensus_7148#2 ------------------------------------------------------------
consensus_7148#3 ------------------------------------------------------------
consensus_7148#1 ------------------------------------------------------------
consensus_7148#0 GAGAAGTGGGTTGGCAAGATAGCGCTGGTAACGGGCGCCAGCTCGGGCATCGGACAGGAT 120
consensus_7148#2 ---------------------------------------------GGCATCGGACAGGAT 15
consensus_7148#3 ------------------------------------------------------------
consensus_7148#1 ------------------------------------------------------------
consensus_7148#0 GTGGCACTTACGCTAGCGGACGCGGGCATGATCGTGGTAGGGATAGCGCGCCGTGCCGAG 180
consensus_7148#2 GTGGCGCTTACGCTAGCGGACGCGGGCATGATCGTGGTAGGGATAGCGCGCCGTGCCGAG 75
consensus_7148#3 -----------------------------------------------GAGCAACGAGGGA 13
consensus_7148#1 ------------------------------------------------------------
consensus_7148#0 CTCGTCACGCTACTCTCCACCAAGGTGACTGGCGGTGGTAAGATTTACGCCAAAAAGTGT 240
consensus_7148#2 CTCGTCACGCTACTCTCCACCAAGGTGACCGGCGGCGGTAAGATTTACGCCAAAAAGTGT 135
consensus_7148#3 GAAATAATGGAAACGCTCAACTGGATCCCCCGCG------AGTTCGGTGGCGTTGA-TGT 66
consensus_7148#1 ------------------------------------------------------------
consensus_7148#0 GATGTGAGCAACGAGGGAGAAATAATGGAAACGCTCAACTGGATCCGCCGCGAGTTCGGT 300
consensus_7148#2 GATGTGAGCAACGAGGGAGAAATAATGGAAACGCTCAACTGGATCCGCCGCGAGTTCGGT 195
consensus_7148#3 GCT--GATCAATAATGCAGGCAT--TTATCGCTATCAATTT-ATCACGCGTAAGTGTGGA 121
consensus_7148#1 --------------------AATAATGGAAACGCTCAACTGGATCCGCCGCGAGTTCGGT 40
** * * **** * *** ** *** **
consensus_7148#0 GGCGTTGATGTGCTGATCAATAATGCAGGCATTTATCGCTATCAATTTATCACGC----- 355
consensus_7148#2 GGCGTTGATGTGCTGATCAATAATGCAGGCATTTATCGCTATCAATTTATCACGC----- 250
consensus_7148#3 AAGGATAGTACACGAAAAAAAAAAAAAATAGAAAAACTCCATTGGTTCGTTACAATTCCA 181
consensus_7148#1 GGCGTTGATGTGCTGATCAATAATGCAGGCATTTATCGCTATCAATTTATCACGC----- 95
* * * * * ** ** * * * * ** ** * **
consensus_7148#0 -AGAGTGAAACGTCCGATTTTCGCGACACCTTCAACGTGAACGTGCTGGCGACGTGCATT 414
consensus_7148#2 -AGAGTGAAACGTCCGATTTTCGCGACACCTTCAACGTGAACGTGCTGGCGACGTGCATT 309
consensus_7148#3 GAGAGTGAAACGTCCGATTTTCGCGACACCTTCAACGTGAACGTGCTGGCGACGTGCATT 241
consensus_7148#1 -AGAGTGAAACGTCCGATTTTCGCGACACCTTCAACGTGAACGTGCTGGCGACGTGCATT 154
***********************************************************
consensus_7148#0 NTCATTCGCGAAGTGGTAAAGGACATGCAGGCAAGGGAAGCGTACGGTCACATCGTGGTG 474
consensus_7148#2 TTCATTCGCGAAGTGGTAAAGGACATGCAGGTAAGGGAAGCGTACGGTCACATCGTGGTG 369
consensus_7148#3 TTCATTCGCGAAGTGGTAAAGGACATGCAGGCAAGGGAAGCGTACGGTCACATCGTGGTG 301
consensus_7148#1 TTCATTCGCGAAGTGGTAAAGGACATGCAGGTAAGGGAAGCGTACGGTCACATCGTGGTG 214
****************************** ****************************
consensus_7148#0 CTGAACAGCTTGCTGGGCAAACGCGTCCCGGACGTATCGGTGCC-GTGTTCGGCGCTGTA 533
consensus_7148#2 CTGAACAGCTTGCTGGGCAAACGCGTCCCGGACGTATCGGTGCCCATGTTCGGCG-TGTA 428
consensus_7148#3 CTGAACAGCTTGCTGGGCAAACGCGTCCCGGACGTATCGGTGCC--CGTGCGG------- 352
consensus_7148#1 CTGAACAGCTTGCTGGGCAAACGCGTCCCGGACGTATCGGTGCCCATGTTCGGCG-TGTA 273
******************************************** ** ***
consensus_7148#0 TCCNGCATCCAAGTTTGCGTNCGTTCGGGATGACGGAAGTGTTGCGGCAAGAGTTAAACT 593
consensus_7148#2 TCCGGCATCCAAGTTTGCGCTCGTT-GGGATGACGGAAGTGTTGCGGCAAGAGTTAAACT 487
consensus_7148#3 ------------------------------------------------------------
consensus_7148#1 TCCGGCATCCAAGTTTGCGCTCGTT-GGGATGACGGAAGTGTTGCGGCAAGAGTTAAACT 332
consensus_7148#0 TCCTCAAGATTGGCCCATCAAAGTTAACGGAGCATTCCATCCCTGGCATGGGTGCAACGA 653
consensus_7148#2 TCCTCAAATT--GCCCATCAAAGTTA-CGGTAAGATTGGTTAGCGGC-TGTGCACA---- 539
consensus_7148#3 ------------------------------------------------------------
consensus_7148#1 TCCTCAAATT--GCCCATCAAAGTTA---CGAGCATTCATCCTGGCATGGTGCAGACGGA 387
consensus_7148#0 CNTGATCAAGGTGGTCAGGAGTCGAAGCTNACGGNACGACTACCAAAAGCTCAGGTGAGG 713
consensus_7148#2 ------------------------------------------------------------
consensus_7148#3 ------------------------------------------------------------
consensus_7148#1 CATGATCAAGGTGTTC--GAGTCGAAGCTAGCGGAACGACTACCAAAGCTCCAGGTGACG 445
consensus_7148#0 GACATTACGGC-AGCATCGNGCATTGCCTTGTCNAGACTCCNGAANTCGNAATCNCATGA 772
consensus_7148#2 ------------------------------------------------------------
consensus_7148#3 ------------------------------------------------------------
consensus_7148#1 GACATTACCGCCAGCATCGTGCATTGCCTTGCAACACCTCCCGAAGTTCGTATCGATGAG 505
consensus_7148#0 CAGACCATNAGGCACGAAGCAGAAAGGCGGGCACGCGAAGGTTCGGCATGTGTGCCACCA 832
consensus_7148#2 ------------------------------------------------------------
consensus_7148#3 ------------------------------------------------------------
consensus_7148#1 CTGACCATTATGCCAACCATGCAGTAAAAGGCCGTGGCCGCCAGCAAAAGGTAACCGTTG 565
consensus_7148#0 CNCAATCATACATTTTGGATGT--------- 854
consensus_7148#2 -------------------------------
consensus_7148#3 -------------------------------
consensus_7148#1 ATTTGTTGTACAACACAAACGCAGAATTCAA 596
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||