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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7153#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1634 fasta sequence
[CCGCCCACGCGTCCGAGCATATTGAAGATGGGTTAATATTTTGTTTTACAAGATTTACTTTACGTCGCATTGTTGGTATGCCTTTTTTGTGTTTCCTGGAACCGTAATACGCTTAGTAAGGTAAGGTTTTGAACGTCAACATGTTTACACAACCACTGTGTTTAGTCCATGATCTGGAACACAATTGACGGTGTCGAAAATTGTCATGAGAGAATTGGTGAAATAATGGAAAAGAACATTATCATCTGGAAAGTATAAGGTTATAATTATTGCTTTAAGTGCTTTGCAGTATATTACTAATACCAAATGCAAATGAGAGGGAGAAATAAATAAGTGAAAAATAACGAAGACAAACG--AAAAAAAAACATAATTCGAAAACAGCAATTGAGGCCTATTGACTATGCAAC--AAAAAAAGAAAAGAAAAACAAATGCATGGTTTAGAACACAGCACTTGTGTTATGCATTGACCAGAACAATGATTTAAAATTTTGTTCCGCTTGAGAGCTTGCTCGCTTATTATCCAGGATGGCGTTACGAGGTGATGCCTAAAATAATATACGAACGTGATAGACAGACAGGAATGGTTTTGGTACGAAAGAGCAGTCGTCGCTTCTTCTGCACACTATAGCAGTATCTTATGAAACGTTACACGTTATGAAACATTTATGTTAGTGTCGAATAAGTTGCTTGGAGCGTGCTGTTTTACCATGTGTGCGAGTATGTGTAGCCTTTTGAAAAGACGCTAATTGCGAACCAATCGTACTGCATCGGAAAAGATTATGCATTAGACACTACGCCTTCCTGTAAACGATCAGACGGTGTAGACACACGTACACGAAACGATCCAGGGATGTGGAAATGTTACCACTATATCGATTATTTGCATTTCGATAGAAGTTTGAAGATAGACCAGAGACAACATCAAAACAAAAATAAAATATAAATAAAAAGGGAGAGGGAAAGAAAAGTAAAGCAAACAAGCATGGCTACCCGCGTCGGTGTGACAAAAGAGTTCTTTGGAATGTGAGAAAATGTGTACGCTGAAAATGTATGTTGGGAAATACGGGAATAGAAATGTTAGTAGATAAACAAAAAAAAAACAAATAAACAAACAAAAAGATTGTTGAGCGACATGAGTAAAGTAAATTAATTTACAAACAATTGATATAAAAGAATATTAACAAAATACATCTATAATTGAATCAACAATCCAACCAACCAAGTGGAACACAGAAAACCAACCACAACGTTGCCCTCCCTGTTTTTCTCATCGTCGACAGAAAACAGGGGAGTGGGTGGCGTTTGTACAAAGCTAGGGCGAAGGAAAACACATGAAACAACTAGTACTCGTAGCTAAGAACCAATGAAGTTAGACTGGGTGAAAAGGGTTAAAAATGCAAGTAAAAAGTAAATTTTAAAATTATTTTATATTAACTTAAGTAAACCATACTAACACATTCTCACCACACAACACATAAACATACAAACCAAACAAACTTTGCTGAAACAATGCTGTAAGTAAATGCTGAAAAAAGTCATACACTTCACACGGCCAGAGGCTACATCCTTACTTCATGTTTTTTTACACACACTTTTACACATACACACACTTATACACAATTACACACACTAGA]
[+] EMBL BM624563 [CCGCCCACGCGTCCGAGCATATTGAAGATGGGTTAATATTTTGTTTTACAAGATTTACTTTACGTCGCATTGTTGGTATGCCTTTTTTGTGTTTCCTGGAACCGTAATACGCTTAGTAAGGTAAGGTTTTGAACGTCAACATGTTTACACAACCACTGTGTTTAGTCCATGATCTGGAACACAATTGACGGTGTCGAAAATTGTCATGAGAGAATTGGTGAAATAATGGAAAAGAACATTATCATCTGGAAAGTATAAGGTTATAATTATTGCTTTAAGTGCTTTGCAGTATATTACTAATACCAAATGCAAATGAGAGGGAGAAATAAATAAGTGAAAAATAACGAAGACAAACGAAAAAAAAAAACATAATTCGAAAACAGCAATTGAGGCCTATTGACTATGCAAC AAAAAAAGAAAAGAAAAACAAATGCATGGTTTAGAACACAGCACTTGTGTTATGCATTGACCAGAACAATGATTTAAAATTTTGTTCCGCTTGAGAGCTTGCTCGCTTATTATCCAGGATGGCGTTACGAGGTGATGCCTAAAATAATATACGAACGTGATAGACAGACAGGAATGGTTTTGGTACGAAAGAGCAGTCGTCGCTTCTTCTGCACACTATAGCAGTATCTTATGAAACGTTACACGTTA ]
[+] EMBL BM583455 [ ccgAACGAAGACAAACG AAAAAAAAACATAATTCGAAAACAGCAATTGAGGCCTATTGACTATGCAACAAAAAAAAAGAAAAGAAAAACAAATGCATGGTTTAGAACACAGCACTTGTGTTATGCATTGACCAGAACAATGATTTAAAATTTTGTTCCGCTTGAGAGCTTGCTCGCTTATTATCCAGGATGGCGTTACGAGGTGATGCCTAAAATAACATACGAACGTGATAGACAGACAGGAATGGTTTTGGTACGAAAGAGCAGTCGTCGCTTCTTCTGCACACTATAGCAGTATCTTATGAAACGTTACACGTTATGAAACATTTATGTTAGTGTCGAATAAGTTGCTTGGAGCGTGCTGTTTTACCATGTGTGCGAGTATGTGTAGCCTTTTGAAAAGACGCTAATTGCGAACCAATCGTACTGCATCGGAAAAGATTA ]
[+] EMBL BX614470 [ ATGAAACATTTATGTTAGTGTCGAATAAGTTGCTTGGAGCGTGCTGTTTTACCATGTGTGCGAGTATGTGTAGCCTTTTGAAAAGACGCTAATTGCGAACCAATCGTACTGCATCGGAAAAGATTATGCATTAGACACTACGCCTTCCTGTAAACGATCAGACGGTGTAGACACACGTACACGAAACGATCCAGGGATGTGGAAATGTTACCACTATATCGATTATTTGCATTTCGATAGAAGTTTGAAGATAGACCAGAGACAACATCAAAACAAAAATAAAATATAAATAAAAAGGGAGAGGGAAAGAAAAGTAAAGCAAACAAGCATGGCTACCCGCGTCGGTGTGACAAAAGAGTTCTTTGGAATGTGAGAAAATGTGTACGCTGAAAATGTATGTTGGGAAATA ]
[+] EMBL BX613373 [ GAAGTTTGAAGATAGACCAGAGACAACATCAAAACAAAAATAAAATATAAATAAAAAGGGAGAGGGAAAGAAAAGTAAAGCAAACAAGCATGGCTACCCGCGTCGGTGTGACAAAAGAGTTCTTTGGAATGTGAGAAAATGTGTACGCTGAAAATGTATGTTGGGAAATACGGGAATAGAAATGTTAGTAGATAAACAAAAAAAAAACAAATAAACAAACAAAAAGATTGTTGAGCGACATGAGTAAAGTAAATTAATTTACAAACAATTGATATAAAAGAATATTAACAAAATACATCTATAATTGAATCAACAATCCAACCAACCAAGTGGAACACAGAAAACCAACCACAACGTTGCCCTCCCTGTTTTTCTCATCGTCGACAGAAAACAGGGGAGTGGGTGGCGTTTGTACAAAGCTAGGGCGAAGGAAAACACATGAAACAACTAGTACTCGTAGCTAAGAACCAATGAAGTTAGACTGGGTGAAAAGGGTTAAAAATGCAAGTAAAAAGTAAATTTTAAAATTATTTTATATTAACTTAAGTAAACCATACTAACACATTCTCACCACACAACACATAAACATACAAACCAAACAAACTTTGCTGAAACAATGCTGTAAGTAAATGCTGAAAAAAGTCATACACTTCACACGGCCAGAGGCTACATCCTTACTTCATGTTTTTTTACACACACTTTTACACATACACACACTTATACACAATTACACACACTAGA]
consensusID : consensus_7153#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 704 fasta sequence
[CCGGCAGAAGTGAGTTGTTTAAATGGTTGAATAACTGCACTATTGTTTTGTGCGGCAGCTTATGACTAAAATTGGCAGGTTGCAGAGAAAGTTGATGCAGTTTGTTGGATTGTTACCCCCACATTGTCTGATCCGTCCAGTGGAAAATGGATTAATTTACGCCAAATAACGGAAACTTAAACACAACCTTTTGCCACGACCGCTTGTGTGTGTGTATGTGTGTGTTTGCGCTGCCTTGGAACACTCTTCGAGTGATGAAGCATAACCAGGACCAACCAGTTTTTCCTCCCATTCGTACTTCAGCGGTATGTTCATGTTTAGTTTATTTGCGAACTGAAGATTATGCATCGCGTGATGAGTCGAACGCGCGAAATAAGCATATTGAAGATGGGTTAATATTTTGTTTTACAAGATTTACTTTACGTCGCATTGTTGGTATGCCTTTTTTGTGTTTCCTGGAACCGTAATACGCTTAGTAAGGTAAGGTTTTGAACGTCAACATGTTTACACAACCACTGTGTTTAGTCCATGATCTGGAACACAATTGACGGTGTCGAAAATTGTCATGAGAGAATTGGTGAAATAATGGAAAAGAACATTATCATCTGGAAAGTATAAGGTTATAATTATTGCTTTAAGTGCTTTGCAGTATATTACTAATACCAAATGCAAATGAGAGGGAGAAATAAATAAGTGAAAAATAA]
[+] EMBL BM631817 [CCGGCAGAAGTGAGTTGTTTAAATGGTTGAATAACTGCACTATTGTTTTGTGCGGCAGCTTATGACTAAAATTGGCAGGTTGCAGAGAAAGTTGATGCAGTTTGTTGGATTGTTACCCCCACATTGTCTGATCCGTCCAGTGGAAAATGGATTAATTTACGCCAAATAACGGAAACTTAAACACAACCTTTTGCCACGACCGCTTGTGTGTGTGTATGTGTGTGTTTGCGCTGCCTTGGAACACTCTTCGAGTGATGAAGCATAACCAGGACCAACCAGTTTTTCCTCCCATTCGTACTTCAGCGGTATGTTCATGTTTAGTTTATTTGCGAACTGAAGATTATGCATCGCGTGATGAGTCGAACGCGCGAAATAAGCATATTGAAGATGGGTTAATATTTTGTTTTACAAGATTTACTTTACGTCGCATTGTTGGTATGCCTTTTTTGTGTTTCCTGGAACCGTAATACGCTTAGTAAGGTAAGGTTTTGAACGTCAACATGTTTACACAACCACTGTGTTTAGTCCATGATCTGGAACACAATTGACGGTGTCGAAAATTGTCATGAGAGAATTGGTGAAATAATGGAAAAGAACATTATCATCTGGAAAGTATAAGGTTATAATTATTGCTTTAAGTGCTTTGCAGTATATTACTAATACCAAATGCAAATGAGAGGGAGAAATAAATAAGTGAAAAATAA]
[+] EMBL BX615477 [ aGCAGAAGTGAGTTGTTTAAATGGTTGAATAACTGCACTATTGTTTTGTGCGGCAGCTTATGACTAAAATTGGCAGGGTGCAGAGAAAGTGGATGCAGTTGGTTGGATAGTAACCCCCACATGGTCTGATCCGTCCAGTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7153#0 CCGCCCACGCGTCCGAGCATATTGAAGATGGGTTAATATTTTGTTTTACAAGATTTACTT 60
consensus_7153#1 ------------------------------------------------------------
consensus_7153#0 TACGTCGCATTGTTGGTATGCCTTTTTTGTGTTTCCTGGAACCGTAATACGCTTAGTAAG 120
consensus_7153#1 ------------------------------------------------------------
consensus_7153#0 GTAAGGTTTTGAACGTCAACATGTTTACACAACCACTGTGTTTAGTCCATGATCTGGAAC 180
consensus_7153#1 ------------------------------------------------------------
consensus_7153#0 ACAATTGACGGTGTCGAAAATTGTCATGAGAGAATTGGTGAAATAATGGAAAAGAACATT 240
consensus_7153#1 ------------------------------------------------------------
consensus_7153#0 ATCATCTGGAAAGTATAAGGTTATAATTATTGCTTTAAGTGCTTTGCAGTATATTACTAA 300
consensus_7153#1 ------------------------------------------------------------
consensus_7153#0 TACCAAATGCAAATGAGAGGGAGAAATAAATAAGTGAAAAATAACGAAGACAAACGAAAA 360
consensus_7153#1 ------------------------------------------------------------
consensus_7153#0 AAAAACATAATTCGAAAACAGCAATTGAGGCCTATTGACTATGCAACAAAAAAAGAAAAG 420
consensus_7153#1 ------------------------------------------------------------
consensus_7153#0 AAAAACAAATGCATGGTTTAGAACACAGCACTTGTGTTATGCATTGACCAGAACAATGAT 480
consensus_7153#1 ------------------------CCGGCAGAAGTGAGTTGT-TTAAATGGTTGAATAAC 35
* *** *** ** ** * * *** *
consensus_7153#0 TTAAAATTTTGTTCCGCTTGAGAGCTTGCTCGCTTATTATCCAGGATGGCGTTACGAGGT 540
consensus_7153#1 T-GCACTATTGTTTTGTGCGGCAGCTT--------ATGACTAAAATTGGCAGGTTGCAGA 86
* * * ***** * * ***** ** * * **** * *
consensus_7153#0 GATGCCTAAAATAATATACGAACGTGATAGACAGACAGGAATGGTTTTGGTACGAAAGAG 600
consensus_7153#1 GAAAGTTGATGCAGTTTGTTGGATTGTTACCCCCACATTGTCTGATCCG-TCCAGTGGAA 145
** * * * * * ** ** * *** * * * * * **
consensus_7153#0 CAGTCGTCGCTTCTTCTGCACACTATAGCAGTATCTTATGAAACGTTACACGTTATGAAA 660
consensus_7153#1 AA----TGGATTAATTTACGCCAAATAACGGAAACTTAAACACAACCTTTTGCCACGAC- 200
* * * ** * * * * *** * * * **** * * * **
consensus_7153#0 CATTTATGTTAGTGTCGAATAAGT-TGCTTGGAGCGTGCTGTTTTACCATGTGTGCGAGT 719
consensus_7153#1 CGCTTGTGTGTGTGT---ATGTGTGTGTTTGCGCTGCCTTGGAACACTCTTCGAGTGATG 257
* ** *** **** ** ** ** *** * ** ** * * * **
consensus_7153#0 ATGTGTAGCCTTTTGAAAAGACGCTAATTGCGAACCAATCGTACTGCATCGGAAAAGATT 779
consensus_7153#1 AAGCATAACC---AGGACCAACCAGTTTTTCCTCCCATTCGTACTTCAGCGG-------T 307
* * ** ** * * ** ** * *** ******* ** *** *
consensus_7153#0 ATGCATTAGACACTACGCCTTCCTGTAAACGATCAGACGGTGTAGACACACGTACACGAA 839
consensus_7153#1 ATGTTC---ATGTTTAGTTTATTTGCGAACTGA-AGATTATGCA---TCGCGTG-ATGAG 359
*** * * * * ** *** *** ** * * *** * **
consensus_7153#0 ACGATCCAGGGATGTGGAAATGTTACCACTATATCGATTATTTGCATTTCGATAGAAGTT 899
consensus_7153#1 TCGAACGCGCGAAATAAGCATATTGAAGATGGGTTAATATTTTGTTTTACAAGATTTACT 419
*** * * ** * ** ** * * ** **** ** * * * *
consensus_7153#0 TGAAGATAGACCAGAGACAACATCAAAACAAAAATAAAATATAAATAAAAAGGGAGAGGG 959
consensus_7153#1 TTACGTCGCATTGTTGGTATGCCTTTTTTGTGTTTC--CTGGAACCGTAATACGCTTAGT 477
* * * * * * * * ** ** * *
consensus_7153#0 AAAGAAAAGTAAAGCAAACAAGCATGGCTACCCGCGTCGGTGTGACAAAAGAGTTCTTTG 1019
consensus_7153#1 AAGGTAAGGTTTTGAACGTCAACATGTTTACACA-ACCACTGTGTTTAGTCCATGATCTG 536
** * ** ** * * * **** *** * * **** * * * **
consensus_7153#0 GAATGTGAGAAAATGTGTACGCTGAAAATGTATGTTGGGAAATACGGGAATAGAAATGTT 1079
consensus_7153#1 GAACACAATTGACGGTGT----CGAAAAT---TGTC-------------ATGAGAGAATT 576
*** * * **** ****** *** ** * **
consensus_7153#0 AGTAGATAAACAAAAAAAAAACAAATAAACAAACAAAAAGATTGTTGAGCGACATGAGTA 1139
consensus_7153#1 GGTG---AAATAATGGAAAAGAACATTATCATCTGGAAAG--TATAAGGTTATAATTATT 631
** *** ** **** * ** * ** **** * * * * * *
consensus_7153#0 AAGTAAATTAATTTACAAACAATTGATATAAAAGAATATTAACAAAATACATCTATAATT 1199
consensus_7153#1 GCTTTAAGTGCTTTGCAGTATATTACTAATACCAAATGCAAATGAGAGGGAGAAATAAAT 691
* ** * *** ** *** ** * *** ** * * * **** *
consensus_7153#0 GAATCAACAATCCAACCAACCAAGTGGAACACAGAAAACCAACCACAACGTTGCCCTCCC 1259
consensus_7153#1 AAGTGAAAAATAA----------------------------------------------- 704
* * ** ***
consensus_7153#0 TGTTTTTCTCATCGTCGACAGAAAACAGGGGAGTGGGTGGCGTTTGTACAAAGCTAGGGC 1319
consensus_7153#1 ------------------------------------------------------------
consensus_7153#0 GAAGGAAAACACATGAAACAACTAGTACTCGTAGCTAAGAACCAATGAAGTTAGACTGGG 1379
consensus_7153#1 ------------------------------------------------------------
consensus_7153#0 TGAAAAGGGTTAAAAATGCAAGTAAAAAGTAAATTTTAAAATTATTTTATATTAACTTAA 1439
consensus_7153#1 ------------------------------------------------------------
consensus_7153#0 GTAAACCATACTAACACATTCTCACCACACAACACATAAACATACAAACCAAACAAACTT 1499
consensus_7153#1 ------------------------------------------------------------
consensus_7153#0 TGCTGAAACAATGCTGTAAGTAAATGCTGAAAAAAGTCATACACTTCACACGGCCAGAGG 1559
consensus_7153#1 ------------------------------------------------------------
consensus_7153#0 CTACATCCTTACTTCATGTTTTTTTACACACACTTTTACACATACACACACTTATACACA 1619
consensus_7153#1 ------------------------------------------------------------
consensus_7153#0 ATTACACACACTAGA 1634
consensus_7153#1 ---------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||