cluster # 7172

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Anopheles gambiae
cluster # 7172 cluster # 7172 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7172#0 length = 966 sequences # 4

consensus_7172#1 length = 665 sequences # 2

consensusID : consensus_7172#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 966
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCGCAAAGTGTTCTGAAAACACAACAAATTTGGCTCATTTTAAAAGCGTCGAAACAACTCGTTTTACGTTGCTTTCGATGAGTAAATAGTTGTAAAAAAGTGTACAAGTAACTCAAGCTTACGCTTGCATCGTTTTAAGTGCTTAAAGTGAACCAAAAATGAGCCGATTTTGTTAGTTTGTTTTCCTCCCTACTGAGCGTTTGTGTAAAATGAAGATTTTCCAGCCAAATTGGGTCCATCACGATGAGAAATCCATTTTCTCGATCGATATTCACCCGAGCGGCGAACGGTTCGCTACCGGCGGGCAGGGATGCGACTCGGGCCGGGTCGTGATCTGGAACATGGCGCCGGTGCTGAGCGAGCAGGCCGAAGCGAACAAAAGCGTGCCGCGCGTCCTCTGCCAGATGGACAACCATCTGGCGTGCGTGAACTGTGTGCGGTGGTCCGGCAACGGGTTGATGCTGGCGTCCGGCGGGGACGACAAGCTGGTCATGATCTGGAAAAAGACGCTCAGTGGCAGCGGGGGCGGCATCGGTGCGTTCGGTGGCGGCGGCGGCAAGTCCGTCGAGCACTGGCGCTGCATTTCCACGCTCCGGGGGCACGCCGGGGATGTGCTGGATCTGCTCGGCGCCTCGCACAACAGCCTCGACCCTTGCCGGACACTGGCCGGCGACGATGCGGACGACCGGTCGGTGCTCGGCATCTCGAAGCAGCTGCTGATGGAGGACGTGCTGAATCACCTGAAAACGCAAACCAAATGGCAGCGCATCTACACCGAGTATCTGGACCAGCTAAAATTCCTCAAGGAGCGGGATGGCGGCG-GCGGCGGCCGAGACAAACCACTGATGGAGTAGTGCATGGAGTGTAGCCGAGCGTACAATAAAACTCTAAACTCTACGGTAAGCTTGTCTCACAAAAAAAAAAAAAAAAAAAAAGGCCA]

[+] EMBL BM646428             [CCGCGGACGCGTGGGCGGACGCGTGGGCGCAAAGTGTTCTGAAAACACAACAAATTTGGCTCATTCTAAAAGCGTCGAAACAACTCGTTTTACGTTGCTTTCGATGAGAAAATAGTTGTAAAAAAGTGTACAAGTAACTCATGCTTATTCTTGCATCGTTTTAAGTGCTTAAAGTGAACCAAAAATGAGCCGATTTTGTTAGTTTGTTTTCCTCCCTACTGAGCGTTTGTGTAAAATGAAGATTTTCCAGCCAAATTGGGTCCATCACGATGAGAAATCCATTTTCTCGATCGATATTCACCCGAGCGGCGAACGGTTCGCTACCGGCGGGCAGGGATGCGACTCGGGCCGGGTCGTGATCTGGAACATGGCGCCGGTGCTGAGCGAGCAGGCCGAAGCGAACAAAAGCGTGCCGCGCGTCCTCTGCCAGATGGACAACCATCTGGCGTGCGTGAACTGTGTGCGGTGGTCCGGCAACGGGTTGATGCTGGCGTCCGGCGGGGACGACAAGCTGGTCATGATCTGGAAAAAGACGCTCAGTGGCAGCGGGGGCGGCATCGGTGCATTCGGTGGCGGCGGCGGCAAGTCCGTCGAGCACTGGCGCTGCATTT                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM592803             [                           ccgAAAGTGTTCTGAAAACACAACAAATTTGGCTCATTTTAAAAGCGTCGAAACAACTCGTTTTACGTTGCTTTCGATGAGTAAATAGCTGTAAAAAAGTGTACAAGTAACTCAAGCTTACGTTTGCATTGTTTTAAGTGCTTAAAGAGAACCACAAATGAGCCGATTTTGGTAGTTTGTTTTCCTCCCTACTGACCGTTTGTGTAAAATGAAGATTTTCCAGCCAAATTGGGTCCATCACGATGAGAAATCCATTTTCTCTATCGATATTCACCCGAGCGGCGAACGGATCGCTACCGGCGGGCAGGGATGCTACTCGGGCCGGGTCGTGATCTGGAACATGGCGCCGGTGCTGAGCGAGCAGGCCGAAGCGAACAAAAGCGTACCGCGCGTCCTCTGCCAGATGGACAACCATCTGGCGTGCGTGAACTGTGTGCGGTGGTCCGGCAACGGGTTGATGCTGGCGTCCGGCGGGGACGACAAGCTGGTCATGATCTGGAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CNS098LV             [                                        GAAAACA AACAAATTTGGCTCATTTTAAAAGCGTCGAAACAACTCGTTTTACGTTGCTTTCGATGAGTAAATAGTTGTAAAAAAGTGTACAAGTAACTCAAGCTTACGCTTGCATCGTTTTAAGTGCTTAAAGTGAACCAAAAATGAGTCGATTTTGTTAGTTTGTTTTCCTCCCTACTGAGCGTTTGTGTAAAATGAAGATTTTCCAGCCAAATTGGGTCCATCACGATGAGAAATCCATTTTCTCGATCGATATTCACCCGAGCGGCGAACGGTTCGCTACCGGCGGGCAGGGATGCGACTCGGGCCGGGTCGTGATCTGGAACATGGCGCCGGTGCTGAGCGAGCAGGCCGAAGCGAACAAAAGCGTGCCGCGCGTCCTCTGCCAGATGGACAACCATCTGGCGTGCGTGAACTGTGTGCGGTGGTCCGGCAAC GGCTGATGCTGGCGTCCGGCGGGGACGACAAGCTGGTCATGATCTGGAAAAAGACGCTCAGTGGCAGCGGGGGCGGCATCGGTGCGTTCGGTGGCGGCGGCGGCAAGTCCGTCGAGCACTGGCGCTGCATTTCCACGCTCCGGGGGCACGCCGGGGATGTGCTGGATCTGCTCGGCGCCTCGCACAACAGCCTCGACCCTTGCCGGACACTGGCCGGCGACGATGCGGACGACCGGTCGGTGCTCGGCATCTCGAAGCAGCTGCTGATGGAGGACGTGCTGAATCACCTGAAAACGCAAACCAAATGGCAGCGCATCTACACCGAGTATCTGGACCAGCTAAAATTCCTCAAGGAGCGGGATGGCGGCG GCGGCGGCCGAGACAAACCACTGATGGAGTAGTGCATGGAGTGTAGCCGAGCGTACAATAAAACTCTAAACTCTACGGTAAGCTTGTCTCACAAAAAAAAAAAAAAAAAAAAAGGCCA]
[-] EMBL CNS098LW             [                                                                                                                                                                                                                                                                                                                                                                                                                              GCGCGTCCTCTGCCAGATGGACAACCCTCTGGCGTGCGTGAACTGTGTGCGGTGGTCCGGCAACGGGCTGATGCTGGCGTCCGGCGGGGACGACAAGCTGGTCATGTTCTGGAAAAAGACGCTTAGTGGCAGCGGGGGCGGCATCGGTGCGTTCGGTGGCGGCGGCGGCAAGTCCGTCGAGAACTGGGGCTGCATTTCCACGCTCCGGGGGCACCCCGGGGATGTGCTGGATCTGCTCGGCGCCTCGGACAAAAGCCTCGACCCTTGCCGGAAACTGGCCGGCGACGATGCGGACGACCGGTCGGTGCTCGGCATCTCGAAGCAGCTGCTGATGGAGGACGTGCTGAATCACCTGAAAACGCAAACCAAATGGCAGCGCATCTACACCGAGTTTCTGGACCAGCTAAAATTCCTCAAGGAGCGGGATGGCGGCGCGCGGCGGCCGAGACAAACCACTGA                                                                                              ]




>consensus_7172#0
CCGCGGACGCGTGGGCGGACGCGTGGGCGCAAAGTGTTCTGAAAACACAACAAATTTGGC
TCATTTTAAAAGCGTCGAAACAACTCGTTTTACGTTGCTTTCGATGAGTAAATAGTTGTA
AAAAAGTGTACAAGTAACTCAAGCTTACGCTTGCATCGTTTTAAGTGCTTAAAGTGAACC
AAAAATGAGCCGATTTTGTTAGTTTGTTTTCCTCCCTACTGAGCGTTTGTGTAAAATGAA
GATTTTCCAGCCAAATTGGGTCCATCACGATGAGAAATCCATTTTCTCGATCGATATTCA
CCCGAGCGGCGAACGGTTCGCTACCGGCGGGCAGGGATGCGACTCGGGCCGGGTCGTGAT
CTGGAACATGGCGCCGGTGCTGAGCGAGCAGGCCGAAGCGAACAAAAGCGTGCCGCGCGT
CCTCTGCCAGATGGACAACCATCTGGCGTGCGTGAACTGTGTGCGGTGGTCCGGCAACGG
GTTGATGCTGGCGTCCGGCGGGGACGACAAGCTGGTCATGATCTGGAAAAAGACGCTCAG
TGGCAGCGGGGGCGGCATCGGTGCGTTCGGTGGCGGCGGCGGCAAGTCCGTCGAGCACTG
GCGCTGCATTTCCACGCTCCGGGGGCACGCCGGGGATGTGCTGGATCTGCTCGGCGCCTC
GCACAACAGCCTCGACCCTTGCCGGACACTGGCCGGCGACGATGCGGACGACCGGTCGGT
GCTCGGCATCTCGAAGCAGCTGCTGATGGAGGACGTGCTGAATCACCTGAAAACGCAAAC
CAAATGGCAGCGCATCTACACCGAGTATCTGGACCAGCTAAAATTCCTCAAGGAGCGGGA
TGGCGGCGGCGGCGGCCGAGACAAACCACTGATGGAGTAGTGCATGGAGTGTAGCCGAGC
GTACAATAAAACTCTAAACTCTACGGTAAGCTTGTCTCACAAAAAAAAAAAAAAAAAAAA
AGGCCA

consensusID : consensus_7172#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 665
fasta sequence

                              [ACCCACGCGTCCGGCAAAGTGTTCTGAAAACACAACAAATTTGGCTCATTCTAAAAGCGTCGAAACAACTCGTTTTACGTTGCTTTCGATGAGAAAATAGTTGTAAAAAAGTGTACAAGTAACTCATGCTTATTCTTGCATCGTTTTAAGTGCTTAAAGTGAACCAAAAATGAGCCGATTTTGTTAGTTTGTTTTCCTCCCTACTGAGCGTTTGTGTAAAATGAAGATTTTCCAGCCAAATTGGGTCCATCACGATGAGAAATCCATTTTCTCGATCGATATTCACCCGAGCGGCGAACGGTTCGCTACCGGCGGGCAGGGATGCGACTCGGGCCGGGTCGTGATCTGGAACATGGCGCCGGTGCTGAGCGAGCAGGCCGAAGCGAACAAAAGCGTGCCGCGCGTCCTCTGCCAGATGGACAACCATCTGGCGTGCGTGAACTGTGTGCGGTGGTCCGGCAACGGGTTGATGCTGGCGTCCGGCGGGGACGACAAGCTGGTCATGATCTGGAAAAAGACGCTCAGTGGCAGCGGGGGCGGCATCGGTGCATTCGGTGGCGGCGGCGGCAAGTCCGTCGAGCACTGGCGCTGCATTTCCACGCTCCGGGGGCACGCCGGGGATGTGCTGGATCTGGCCTGGTCGCCGCAGGACCGATGGATTGCGA]

[+] EMBL BM613166             [ACCCACGCGTCCGGCAAAGTGTTCTGAAAACACAACAAATTTGGCTCATTCTAAAAGCGTCGAAACAACTCGTTTTACGTTGCTTTCGATGAGAAAATAGTTGTAAAAAAGTGTACAAGTAACTCATGCTTATTCTTGCATCGTTTTAAGTGCTTAAAGTGAACCAAAAATGAGCCGATTTTGTTAGTTTGTTTTCCTCCCTACTGAGCGTTTGTGTAAAATGAAGATTTTCCAGCCAAATTGGGTCCATCACGATGAGAAATCCATTTTCTCGATCGATATTCACCCGAGCGGCGAACGGTTCGCTACCGGCGGGCAGGGATGCGACTCGGGCCGGGTCGTGATCTGGAACATGGCGCCGGTGCTGAGCGAGCAGGCCGAAGCGAACAAAAGCGTGCCGCGCGTCCTCTGCCAGATGGACAACCATCTGGCGTGCGTGAACTGTGTGCGGTGGTCCGGCAACGGGTTGATGCTGGCGTCCGGCGGGGACGACAAGCTGGTCATGATCTGGAAAAAGACGCTCAGTGGCAGCGGGGGCGGCATCGGTGCATTCGGTGGCGGCGGCGGCAAGTCCGTCGAGCACTGGCGCTGCATTTCCACGCTCCGGGGGCACGCCGGGGATGTGCTGGATCTGGCCTGGTCGCCGCAGGACCGATGGATTGCGA]
[+] EMBL BM590051             [          CCGGCAAAGTGTTCTGAAAACACAACAAATTTGGCTCATTCTAAAAGCGTCGAAACAACTCGTTTTACGTTGCTTTCGATGAGAAAATAGTTGTAAAAAAGTGTACAAGTAACTCATGCTTATTCTTGCATCGTTTTAAGTGCTTAAAGTGAACCAAAAATGAGCCGATTTTGTTAGTTTGTTTTCCTCCCTACTGAGCGTTTGTGTAAAATGAAGATTTTCCAGCCAAATTGGGTCCATCACGATGAGAAATCCATTTTCTCGATCGATATTCACCCGAGCGGCGAACGGTTCGCTACCGGCGGGCAGGGATGCGACTCGGGCCGGGTCGTGATCTGGAACATGGCGCCGGTGCTGAGCGAGCAGGCCGAAGCGAACAAAAGCGTGCCGCGCGTCCTCTGCCAGATGGACAACCATCTGGCGTGCGTGAACTGTGTGCGGTGGTCCGGCAACGGGTTGATGCTGGCGTCCGGCGGGGACGACAAGCTGGTCATGATCTGGAAAAAGACGCTCAGTGGCAGCGGGGGCGGCATCGGTGCATTCGGTGGCGGCGGCGGCAAGTCCGTCGAGCACTGGCGCTGCATTTCCACGCTCCGGGGGCACGCCGGGGATGTGCTGGATCTG                               ]




>consensus_7172#1
ACCCACGCGTCCGGCAAAGTGTTCTGAAAACACAACAAATTTGGCTCATTCTAAAAGCGT
CGAAACAACTCGTTTTACGTTGCTTTCGATGAGAAAATAGTTGTAAAAAAGTGTACAAGT
AACTCATGCTTATTCTTGCATCGTTTTAAGTGCTTAAAGTGAACCAAAAATGAGCCGATT
TTGTTAGTTTGTTTTCCTCCCTACTGAGCGTTTGTGTAAAATGAAGATTTTCCAGCCAAA
TTGGGTCCATCACGATGAGAAATCCATTTTCTCGATCGATATTCACCCGAGCGGCGAACG
GTTCGCTACCGGCGGGCAGGGATGCGACTCGGGCCGGGTCGTGATCTGGAACATGGCGCC
GGTGCTGAGCGAGCAGGCCGAAGCGAACAAAAGCGTGCCGCGCGTCCTCTGCCAGATGGA
CAACCATCTGGCGTGCGTGAACTGTGTGCGGTGGTCCGGCAACGGGTTGATGCTGGCGTC
CGGCGGGGACGACAAGCTGGTCATGATCTGGAAAAAGACGCTCAGTGGCAGCGGGGGCGG
CATCGGTGCATTCGGTGGCGGCGGCGGCAAGTCCGTCGAGCACTGGCGCTGCATTTCCAC
GCTCCGGGGGCACGCCGGGGATGTGCTGGATCTGGCCTGGTCGCCGCAGGACCGATGGAT
TGCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7172#0      CCGCGGACGCGTGGGCGGACGCGTGGGCGCAAAGTGTTCTGAAAACACAACAAATTTGGC 60
consensus_7172#1      --------------ACCCACGCGTCCG-GCAAAGTGTTCTGAAAACACAACAAATTTGGC 45
                                     *  ******  * ********************************

consensus_7172#0      TCATTTTAAAAGCGTCGAAACAACTCGTTTTACGTTGCTTTCGATGAGTAAATAGTTGTA 120
consensus_7172#1      TCATTCTAAAAGCGTCGAAACAACTCGTTTTACGTTGCTTTCGATGAGAAAATAGTTGTA 105
                      ***** ****************************************** ***********

consensus_7172#0      AAAAAGTGTACAAGTAACTCAAGCTTACGCTTGCATCGTTTTAAGTGCTTAAAGTGAACC 180
consensus_7172#1      AAAAAGTGTACAAGTAACTCATGCTTATTCTTGCATCGTTTTAAGTGCTTAAAGTGAACC 165
                      ********************* *****  *******************************

consensus_7172#0      AAAAATGAGCCGATTTTGTTAGTTTGTTTTCCTCCCTACTGAGCGTTTGTGTAAAATGAA 240
consensus_7172#1      AAAAATGAGCCGATTTTGTTAGTTTGTTTTCCTCCCTACTGAGCGTTTGTGTAAAATGAA 225
                      ************************************************************

consensus_7172#0      GATTTTCCAGCCAAATTGGGTCCATCACGATGAGAAATCCATTTTCTCGATCGATATTCA 300
consensus_7172#1      GATTTTCCAGCCAAATTGGGTCCATCACGATGAGAAATCCATTTTCTCGATCGATATTCA 285
                      ************************************************************

consensus_7172#0      CCCGAGCGGCGAACGGTTCGCTACCGGCGGGCAGGGATGCGACTCGGGCCGGGTCGTGAT 360
consensus_7172#1      CCCGAGCGGCGAACGGTTCGCTACCGGCGGGCAGGGATGCGACTCGGGCCGGGTCGTGAT 345
                      ************************************************************

consensus_7172#0      CTGGAACATGGCGCCGGTGCTGAGCGAGCAGGCCGAAGCGAACAAAAGCGTGCCGCGCGT 420
consensus_7172#1      CTGGAACATGGCGCCGGTGCTGAGCGAGCAGGCCGAAGCGAACAAAAGCGTGCCGCGCGT 405
                      ************************************************************

consensus_7172#0      CCTCTGCCAGATGGACAACCATCTGGCGTGCGTGAACTGTGTGCGGTGGTCCGGCAACGG 480
consensus_7172#1      CCTCTGCCAGATGGACAACCATCTGGCGTGCGTGAACTGTGTGCGGTGGTCCGGCAACGG 465
                      ************************************************************

consensus_7172#0      GTTGATGCTGGCGTCCGGCGGGGACGACAAGCTGGTCATGATCTGGAAAAAGACGCTCAG 540
consensus_7172#1      GTTGATGCTGGCGTCCGGCGGGGACGACAAGCTGGTCATGATCTGGAAAAAGACGCTCAG 525
                      ************************************************************

consensus_7172#0      TGGCAGCGGGGGCGGCATCGGTGCGTTCGGTGGCGGCGGCGGCAAGTCCGTCGAGCACTG 600
consensus_7172#1      TGGCAGCGGGGGCGGCATCGGTGCATTCGGTGGCGGCGGCGGCAAGTCCGTCGAGCACTG 585
                      ************************ ***********************************

consensus_7172#0      GCGCTGCATTTCCACGCTCCGGGGGCACGCCGGGGATGTGCTGGATCTGCTCGGCGCCTC 660
consensus_7172#1      GCGCTGCATTTCCACGCTCCGGGGGCACGCCGGGGATGTGCTGGATCTGGCCTGGTCGCC 645
                      *************************************************  * *  *  *

consensus_7172#0      GCACAACAGCCTCGACCCTTGCCGGACACTGGCCGGCGACGATGCGGACGACCGGTCGGT 720
consensus_7172#1      GCAGGACCGA-TGGATTGCGA--------------------------------------- 665
                      ***  ** *  * **                                             

consensus_7172#0      GCTCGGCATCTCGAAGCAGCTGCTGATGGAGGACGTGCTGAATCACCTGAAAACGCAAAC 780
consensus_7172#1      ------------------------------------------------------------
                                                                                  

consensus_7172#0      CAAATGGCAGCGCATCTACACCGAGTATCTGGACCAGCTAAAATTCCTCAAGGAGCGGGA 840
consensus_7172#1      ------------------------------------------------------------
                                                                                  

consensus_7172#0      TGGCGGCGGCGGCGGCCGAGACAAACCACTGATGGAGTAGTGCATGGAGTGTAGCCGAGC 900
consensus_7172#1      ------------------------------------------------------------
                                                                                  

consensus_7172#0      GTACAATAAAACTCTAAACTCTACGGTAAGCTTGTCTCACAAAAAAAAAAAAAAAAAAAA 960
consensus_7172#1      ------------------------------------------------------------
                                                                                  

consensus_7172#0      AGGCCA 966
consensus_7172#1      ------